mRNA_713 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157084
Unique NamemRNA_713
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A835Z4N1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N1_9STRA)

HSP 1 Score: 584 bits (1506), Expect = 4.460e-211
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1
Query:    1 TMADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHEA 858
            TMADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHEA
Sbjct:    1 TMADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHEA 286          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A836CN20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN20_9STRA)

HSP 1 Score: 369 bits (946), Expect = 9.310e-126
Identity = 168/283 (59.36%), Postives = 226/283 (79.86%), Query Frame = 1
Query:    7 ADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHE 855
            A+T RISVK+FD S L +K+F   +T KRG+GKSYLTKDI+Y LH  GFPRCC+FS TE AN FFS F+P VF+HSP DLN L +I   QK++I+KQ+ G +  ++DTR+LIVLDDC++DKK  +S +IRE++ NGRHY ++L++TLQYL+D  P++R+NVD   F +DNIK NRER+++ F G + DY+ FEAVFE+CTAN+EC+CVDNT+SSTD+ DIVSYYKA   +FKFG  SLW+FHDK+++SEEDE+++RQ+M +Q A + S+TKV+ +  ITVV E
Sbjct:    6 ANTNRISVKRFDISMLARKNFTMTLTGKRGTGKSYLTKDIMYHLHKAGFPRCCVFSQTESANGFFSTFVPGVFIHSPFDLNVLANILKQQKDLIMKQKLGQIPADQDTRLLIVLDDCAYDKKILSSPIIREIMMNGRHYFISLVVTLQYLVDFAPSLRANVDVALFLKDNIKGNRERIWKHFCGMFSDYKVFEAVFESCTANFECLCVDNTISSTDNEDIVSYYKAGEHEFKFGNRSLWRFHDKVYLSEEDEFVMRQQMAVQQAVQQSVTKVTSSGLITVVRE 288          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A835Z5I5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I5_9STRA)

HSP 1 Score: 365 bits (936), Expect = 2.880e-124
Identity = 165/283 (58.30%), Postives = 226/283 (79.86%), Query Frame = 1
Query:    7 ADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHE 855
            A T RISVK+FD SKL +KHF  ++T KRGSGKS+L KDI++ LH   +PRCCIFS TE AN FFS+F+P +F+HSP DLN L +I   QK++I++Q+ G +  ++DTR+L+VLDDC++D++   S V+RE++ NGRHY ++LI+TLQYL+DL P++R+NVD   F +DNI+ NRER+++ FAGFY ++  FEAVFE+CTAN+EC CVDNT+SST H DIVSYYKA   DF+FG PSLWKFHD++++SEEDE+++RQ+M +Q A + S+TKV+ +  ITVV E
Sbjct:    4 APTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 286          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A835YWY0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY0_9STRA)

HSP 1 Score: 240 bits (613), Expect = 2.390e-75
Identity = 115/263 (43.73%), Postives = 173/263 (65.78%), Query Frame = 1
Query:   34 KFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEA-VDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTK 819
            KFDP ++ +      +  KRG+GKS L KD+LY L+  G PRC  FS TE AN +F  F+P VFVH PLD +TL  +W  QKE++L++R G L+ + DTR+++V+DDC++ K+   S  +RE+  NGRH+ +  I+TLQYL+DL  AMRSNVD  F+ ++    N+ER+Y +  GF P + TF+ +F A TANYE   V++   S D   IV++Y+A+A ++FK+G P+LW++HD+++ S  D+Y   Q+    S   +  T+
Sbjct:    7 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATR 268          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A835Z4P3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P3_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.010e-72
Identity = 114/250 (45.60%), Postives = 164/250 (65.60%), Query Frame = 1
Query:   34 KFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAE-AVDFKFGPPSLWKFHDKLFISEEDEYILRQK 780
            KFD S++ +      +  KRGSGKS L KDILY LH    PRC  FS TE AN+FFS F+P+VFVH+ L+ +TL+++W  QKE+ +++  G L    DTR+ I+LDDC+FDK    S V++E+  NGRH+ +  I+TLQYL+DL  +MRSNVD  FF ++    N+ER+Y +  GF P +  F+ +F A T+NYE   V+    S+D   I+ YYKA+  ++F+FGP S+W+FH  ++ S  D Y+  Q+
Sbjct:    7 KFDMSEVSRSPACVAICGKRGSGKSVLIKDILYHLHVARVPRCVCFSATEDANQFFSGFVPDVFVHA-LNHDTLSNMWQAQKELAMQKAVGQLPPGTDTRLAIILDDCAFDKTVMKSAVLKEIFMNGRHHGVFFIVTLQYLIDLNVSMRSNVDVFFFLKELNLKNQERIYHESCGFLPCFGAFQDLFMASTSNYEAFVVNGRCKSSDAQQIIHYYKADPTLNFRFGPASIWRFHSTVYESATDRYVRMQR 255          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: Q6XM75_9PHYC (FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM75_9PHYC)

HSP 1 Score: 204 bits (520), Expect = 4.500e-61
Identity = 103/285 (36.14%), Postives = 175/285 (61.40%), Query Frame = 1
Query:   10 DTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNT-LTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAE-AVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHEA 858
            D   I +  F+      KHF A++  K+ +GKS L KDILY +H +  PR C+FSGTE +N F+ +FIP++F+     +   LT I  +QK+I ++++ G   ++ D+RI++VLDD  + K T   +++R++  NGRH++++LI+  QY +DL   +R+N D+ F  + N   + + L+  + G +   + F+ V EACTA+Y+C+ +DNT  ST+ TD+  +YKA+   ++KFG P LW++H + ++SE+  Y  +QK      +K S ++   +    VVH+A
Sbjct:    2 DERTIKLSAFNAKAACSKHFNAVVIGKKHTGKSTLIKDILYNVHKQKVPRICVFSGTEESNGFYREFIPDLFIFDDSMVEEKLTQIVESQKKIGMQKQLGECGDDVDSRIVVVLDDVGYKKNTLKCEILRQIFMNGRHHQISLIVACQYCMDLAIDLRTNADYVFVLKQNNMNSIKNLHETYFGSFEKKKDFQTVLEACTADYQCLVLDNTKPSTNTTDVCFWYKAKYGKEYKFGCPLLWEYHGRWYMSEKQRYQSQQK------TKPSRSRTGTHQQQLVVHKA 280          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A836CRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRE2_9STRA)

HSP 1 Score: 202 bits (515), Expect = 7.490e-61
Identity = 100/250 (40.00%), Postives = 156/250 (62.40%), Query Frame = 1
Query:   34 KFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEA-VDFKFGPPSLWKFHDKLFISEEDEYILRQK 780
            +FDP ++ ++     +   RG+GKS L KDILY ++  G PRC +FSGTEGAN +FS+F+P VFVH P+D +TL  +W  QKE++LK+  G L  + +T +++VLDDC+F++K                          YL+DL  AMRSNVD  FF ++  + NRE++Y++  GF P+Y  FE +F   TA+YE   V++  +S++  DIV +YKA+A + +++GPP LW++H  ++ S +  Y  +Q+
Sbjct:    7 RFDPREISKRPVCIAIVGMRGTGKSVLLKDILYHINEAGAPRCVVFSGTEGANSYFSEFVPGVFVH-PMDQDTLHSVWERQKELVLKKAAGGLPASTNTSLVLVLDDCAFNRK--------------------------YLIDLNVAMRSNVDIYFFLKELNRMNREKIYKETCGFLPNYHVFEQLFNDATADYETFVVNSRCTSSNPEDIVHHYKADAGLQYRYGPPCLWRYHHSVYESPQQRYQRQQE 229          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A6C0LXK3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LXK3_9ZZZZ)

HSP 1 Score: 199 bits (506), Expect = 3.270e-59
Identity = 102/242 (42.15%), Postives = 147/242 (60.74%), Query Frame = 1
Query:   22 ISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIIL---KQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVD-FKFGPPSLWKFHD 735
            + +KKFD   ++    V +   KR +GKS+L KD+LY  H +  P   + SGTEGAN F+S+ +P +F+H       + ++   QK++I    K+   +   N D R  ++LDDC +DK    ++ IR +  NGRHYK+  IIT+QY L +PP +R+NVDF F  R+N  +NR+RLY Q+AG +P +  F  V + CT NYEC+ V+N   S    D V +YKAEA D F+ G P LW+FHD
Sbjct:    9 LELKKFDMG-MISDDKVVVFIGKRETGKSFLVKDMLY--HHQDIPVGTVISGTEGANAFYSNMMPSIFIHGEYKPELIQNVLKRQKKVITQIKKENEEYGSCNIDPRAFLILDDCLYDKSWINNKYIRSLFMNGRHYKMMFIITMQYSLGIPPNLRTNVDFVFILRENYVSNRKRLYEQYAGMFPHFDIFCQVMDQCTENYECIVVNNNAKSNKLEDQVFWYKAEAHDDFQLGAPQLWQFHD 247          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: C7U0C4_9PHYC (Uncharacterized protein n=9 Tax=root TaxID=1 RepID=C7U0C4_9PHYC)

HSP 1 Score: 196 bits (497), Expect = 4.060e-58
Identity = 100/268 (37.31%), Postives = 158/268 (58.96%), Query Frame = 1
Query:   22 ISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEA-VDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKV 822
            + ++KF P  +     V +   KR +GKS L KDI+Y  H +  P   + SGTE  N F+ +FIP++FV+   D + +  + + Q++I+     G   +N      ++LDDC +D K      IR+   NGRHY +  ++T+QY++DLPPA+R+NVD+ F  R+NI  NRE+LY+ F G +P +  F  V +ACT NYEC+ +DNTV S   TD V +YKA     F+ G P+LW+ H K++     +Y+ +++   + A+K +  K+
Sbjct:    3 LQLRKFKPEAMSDDR-VCVFIGKRNTGKSTLVKDIMY--HKKHIPAGIVLSGTEEGNHFYGEFIPDLFVYGEYDRDAIERVISRQRKIV-----GTKGKNPYNGAFMLLDDCMYDSKFLKDTCIRQCFMNGRHYNIFFMLTMQYVMDLPPALRANVDYVFILRENIIQNREKLYKSFFGIFPSFDMFSKVMDACTENYECLVLDNTVKSNKITDCVFWYKATVRKGFRVGSPNLWQLHKKMY---NPKYLDQKEDDAKKATKKTNLKI 259          
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Match: A0A0P0CRU3_9PHYC (Uncharacterized protein n=7 Tax=root TaxID=1 RepID=A0A0P0CRU3_9PHYC)

HSP 1 Score: 194 bits (494), Expect = 1.080e-57
Identity = 100/270 (37.04%), Postives = 159/270 (58.89%), Query Frame = 1
Query:   22 ISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIIL--KQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEA-VDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKV 822
            + ++KF P  +     V +   KR +GKS L KDI+Y  H +  P   + SGTE  N F+S+FIP++FV+   D + +  +   Q++++   KQ CG           ++LDDC +D K      IR+   NGRH+K+  ++T+QY +DLPPA+R+NVD+ F  R+NI  NRE+LY+ F G +P +  F  V +ACT NYEC+ +DNTV S    D V +YKA    +F+ G P LW+ H+K++     +++ +++   + A+K +  K+
Sbjct:    3 LQLRKFKPETISDDR-VCVFIGKRNTGKSTLVKDIMY--HKKHLPAGIVLSGTEEGNHFYSEFIPDLFVYGDYDRDAIERVMARQRKLVGDGKQNCG---------AFMLLDDCMYDNKFLKDTCIRQCFMNGRHWKIFFMLTMQYCMDLPPALRANVDYVFLLRENILQNREKLYKSFFGIFPSFDMFNKVMDACTENYECLVLDNTVKSNRIQDCVFWYKASIRKNFRVGSPDLWRLHNKMY---NPKHMQQREDDAKKATKKTSLKI 257          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157084 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4N1_9STRA4.460e-211100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN20_9STRA9.310e-12659.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5I5_9STRA2.880e-12458.30Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YWY0_9STRA2.390e-7543.73Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z4P3_9STRA3.010e-7245.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
Q6XM75_9PHYC4.500e-6136.14FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A836CRE2_9STRA7.490e-6140.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0LXK3_9ZZZZ3.270e-5942.15Uncharacterized protein n=1 Tax=viral metagenome T... [more]
C7U0C4_9PHYC4.060e-5837.31Uncharacterized protein n=9 Tax=root TaxID=1 RepID... [more]
A0A0P0CRU3_9PHYC1.080e-5737.04Uncharacterized protein n=7 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1192738..1193598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157084|e_gw1.2.278.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E819@1|root,2SEJ0@2759|Eukaryota
Evalue2.08e-55
Seed ortholog2880.D8LP63
Hectar predicted targeting categoryother localisation
TranscriptId157406
TrackFilteredModels1
ProteinId157084
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157084gene_713Tribonema minus UTEX_B_3156 geneContig_2 1192738..1193598 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_713_1exon_713_1Tribonema minus UTEX_B_3156 exonContig_2 1192738..1193598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_713CDS_713Tribonema minus UTEX_B_3156 CDSContig_2 1192738..1193598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157084Trimin1|157084|e_gw1.2.278.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1192738..1193598 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_713 ID=mRNA_713|Name=jgi.p|Trimin1|157084|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=861bp|location=Sequence derived from alignment at Contig_2:1192738..1193598+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCATGGCTGATACAACTAGGATCAGCGTCAAGAAATTCGATCCAAGTAA
GCTGGTTCAAAAGCACTTTGTTGCGATCATGACGGCCAAGCGTGGAAGCG
GCAAATCATACCTTACAAAAGACATACTGTACCGCTTGCACTGCGAAGGC
TTCCCCCGTTGCTGCATTTTCAGCGGCACTGAGGGAGCCAACAAGTTCTT
TTCCGACTTCATACCCGAGGTGTTTGTGCACAGCCCTCTAGACCTCAACA
CACTCACGCACATTTGGAACACGCAAAAAGAGATCATTCTGAAACAGAGA
TGCGGTCACCTCGATGAAAATGAGGACACTAGGATACTCATTGTGCTCGA
TGACTGCAGTTTTGACAAGAAAACCTTTACATCACAAGTCATCCGAGAGA
TGCTGTGTAACGGCAGACATTACAAGCTAACATTGATCATCACACTGCAA
TATTTGCTTGACCTACCACCAGCGATGCGGTCTAACGTTGACTTCGGATT
TTTCTTTCGCGATAACATAAAAACCAACAGGGAGCGGCTGTACCGCCAGT
TTGCAGGTTTCTATCCAGATTACAGGACGTTTGAAGCAGTGTTTGAGGCC
TGCACGGCAAATTATGAGTGCATGTGCGTGGACAACACAGTATCTAGTAC
CGACCATACCGACATTGTGTCATATTACAAGGCGGAGGCCGTTGACTTTA
AGTTTGGCCCGCCATCACTGTGGAAGTTTCACGACAAACTGTTCATTTCT
GAAGAAGACGAGTACATTCTGCGCCAAAAGATGACATTGCAGTCGGCATC
GAAGAACAGCATGACAAAGGTGAGCGGCAATAGTTCCATTACAGTCGTTC
ACGAAGCTTAG
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protein sequence of jgi.p|Trimin1|157084

>Trimin1|157084|e_gw1.2.278.1 ID=Trimin1|157084|e_gw1.2.278.1|Name=jgi.p|Trimin1|157084|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=287bp
TMADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEG
FPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQR
CGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQ
YLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEA
CTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFIS
EEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHEA*
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mRNA from alignment at Contig_2:1192738..1193598+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_713 ID=mRNA_713|Name=jgi.p|Trimin1|157084|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=861bp|location=Sequence derived from alignment at Contig_2:1192738..1193598+ (Tribonema minus UTEX_B_3156 )
ACCATGGCTGATACAACTAGGATCAGCGTCAAGAAATTCGATCCAAGTAA GCTGGTTCAAAAGCACTTTGTTGCGATCATGACGGCCAAGCGTGGAAGCG GCAAATCATACCTTACAAAAGACATACTGTACCGCTTGCACTGCGAAGGC TTCCCCCGTTGCTGCATTTTCAGCGGCACTGAGGGAGCCAACAAGTTCTT TTCCGACTTCATACCCGAGGTGTTTGTGCACAGCCCTCTAGACCTCAACA CACTCACGCACATTTGGAACACGCAAAAAGAGATCATTCTGAAACAGAGA TGCGGTCACCTCGATGAAAATGAGGACACTAGGATACTCATTGTGCTCGA TGACTGCAGTTTTGACAAGAAAACCTTTACATCACAAGTCATCCGAGAGA TGCTGTGTAACGGCAGACATTACAAGCTAACATTGATCATCACACTGCAA TATTTGCTTGACCTACCACCAGCGATGCGGTCTAACGTTGACTTCGGATT TTTCTTTCGCGATAACATAAAAACCAACAGGGAGCGGCTGTACCGCCAGT TTGCAGGTTTCTATCCAGATTACAGGACGTTTGAAGCAGTGTTTGAGGCC TGCACGGCAAATTATGAGTGCATGTGCGTGGACAACACAGTATCTAGTAC CGACCATACCGACATTGTGTCATATTACAAGGCGGAGGCCGTTGACTTTA AGTTTGGCCCGCCATCACTGTGGAAGTTTCACGACAAACTGTTCATTTCT GAAGAAGACGAGTACATTCTGCGCCAAAAGATGACATTGCAGTCGGCATC GAAGAACAGCATGACAAAGGTGAGCGGCAATAGTTCCATTACAGTCGTTC ACGAAGCTTAG
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Coding sequence (CDS) from alignment at Contig_2:1192738..1193598+

>mRNA_713 ID=mRNA_713|Name=jgi.p|Trimin1|157084|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=861bp|location=Sequence derived from alignment at Contig_2:1192738..1193598+ (Tribonema minus UTEX_B_3156 )
ACCATGGCTGATACAACTAGGATCAGCGTCAAGAAATTCGATCCAAGTAA
GCTGGTTCAAAAGCACTTTGTTGCGATCATGACGGCCAAGCGTGGAAGCG
GCAAATCATACCTTACAAAAGACATACTGTACCGCTTGCACTGCGAAGGC
TTCCCCCGTTGCTGCATTTTCAGCGGCACTGAGGGAGCCAACAAGTTCTT
TTCCGACTTCATACCCGAGGTGTTTGTGCACAGCCCTCTAGACCTCAACA
CACTCACGCACATTTGGAACACGCAAAAAGAGATCATTCTGAAACAGAGA
TGCGGTCACCTCGATGAAAATGAGGACACTAGGATACTCATTGTGCTCGA
TGACTGCAGTTTTGACAAGAAAACCTTTACATCACAAGTCATCCGAGAGA
TGCTGTGTAACGGCAGACATTACAAGCTAACATTGATCATCACACTGCAA
TATTTGCTTGACCTACCACCAGCGATGCGGTCTAACGTTGACTTCGGATT
TTTCTTTCGCGATAACATAAAAACCAACAGGGAGCGGCTGTACCGCCAGT
TTGCAGGTTTCTATCCAGATTACAGGACGTTTGAAGCAGTGTTTGAGGCC
TGCACGGCAAATTATGAGTGCATGTGCGTGGACAACACAGTATCTAGTAC
CGACCATACCGACATTGTGTCATATTACAAGGCGGAGGCCGTTGACTTTA
AGTTTGGCCCGCCATCACTGTGGAAGTTTCACGACAAACTGTTCATTTCT
GAAGAAGACGAGTACATTCTGCGCCAAAAGATGACATTGCAGTCGGCATC
GAAGAACAGCATGACAAAGGTGAGCGGCAATAGTTCCATTACAGTCGTTC
ACGAAGCTTAG
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