mRNA_7077 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A836CCL6_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL6_9STRA) HSP 1 Score: 358 bits (920), Expect = 3.310e-125 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1 Query: 1 MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHCNT 546 MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHCNT Sbjct: 1 MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHCNT 182
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A835YTC0_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC0_9STRA) HSP 1 Score: 177 bits (450), Expect = 8.270e-55 Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 1 Query: 244 LVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHC 540 +VGTWTAESEDFDTAE +YLSEWTIFTILMFCLSFKECVALRVT LLTA+S+ALLAAGRFD+DVLK GGYFGLAAS GAAY+ATSAIAKENYGFYFY+C Sbjct: 1 MVGTWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAMSIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGFYFYYC 99
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A835YR69_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR69_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.640e-27 Identity = 65/189 (34.39%), Postives = 99/189 (52.38%), Query Frame = 1 Query: 19 PLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVG---------TWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFD------EDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHC 540 PLGL AF +T +M+VE F + V C A+F GG AQ +AG++ + G TFSA F SY FW +G+++++ W S F+T E ++L++W + ++L F L+FK+ AL+ L I+ LLA G + +D GGY GL +A A Y++ + E YG + C Sbjct: 23 PLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPGC 211
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A2N5KQX2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5KQX2_9ACTN) HSP 1 Score: 101 bits (252), Expect = 1.540e-23 Identity = 62/175 (35.43%), Postives = 90/175 (51.43%), Query Frame = 1 Query: 7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFT-WGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRF--DEDVLKVGGYFGLAASAGAAYIATSAIAKENYG 522 A+PAPLGL AF++T + L E V +ALF GGLAQF+AG++ R TF A F SY AFW T W L E++ DT +L W IFT M+ SFK +A+ + LL ++ +L G + V+++GGY G+ + A Y + + + + G Sbjct: 25 ADPAPLGLAAFALTTFMLSLFNAGLLDEAGEPIVFPLALFYGGLAQFLAGMWEYRNNNTFGATAFTSYGAFWLTFWALQTFYANRIPEAQ-LDTVVGWFLIAWGIFTAYMWIGSFKVSIAVNIVFLLLTVTFFVLGIGDLLGSDSVVRIGGYLGIVTALAAWYASAAGVLNDTIG 198
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A1F8LLN6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium GWC2_73_18 TaxID=1797616 RepID=A0A1F8LLN6_9CHLR) HSP 1 Score: 97.4 bits (241), Expect = 5.720e-22 Identity = 59/174 (33.91%), Postives = 90/174 (51.72%), Query Frame = 1 Query: 7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRF--DEDVLKVGGYFGLAASAGAAYIATSAIAKENYG 522 A+PAPLGL AF++T + L + V +ALF GGLAQ +AG++ R G TF A F SY AFW ++ E+ D A +L W IFT M+ S + ++ + LL ++ +L+A F E + ++GGY G+A + A Y + +A+ E +G Sbjct: 23 ADPAPLGLAAFALTTFVLSVANAGLIGASSIQVVLGLALFYGGLAQLLAGMWEFRNGNTFGATAFSSYGAFWLSFAAFSFWFAPGLEAADRAGATGTFLLAWGIFTAYMWIASLRHAPSVMIVFLLLTVTFFVLSASDFAASEPLRRLGGYLGIATAFAAWYASAAAVIDEAFG 196
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A0V9UKH6_9NOCA (Uncharacterized protein n=13 Tax=Rhodococcus TaxID=1827 RepID=A0A0V9UKH6_9NOCA) HSP 1 Score: 97.1 bits (240), Expect = 8.240e-22 Identity = 65/177 (36.72%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFT-WGLMKLVGTWTAESEDFD--TAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522 A+P PLGL AF++T + S + E V +ALF GGL Q AG++ +G F A F SY AFW + W L+ T+TAE + ++L WTIFT+ M+ S + AL VT + ++ L G E + +VGGYFGLAA+AGA Y + + + +G Sbjct: 22 ADPGPLGLAAFALTTFILSCANAGFISVEAEAAVFGVALFYGGLTQLAAGMWEFLKGNVFGATAFSSYGAFWLSFWYLV----TYTAEEMGAERHVGVGIFLLAWTIFTVYMWFASTRISAALFVTFSVLLVAFVFLTLGALLEQTGLTRVGGYFGLAAAAGAWYTSAAGVLSTTFG 194
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: UPI000FD7C1A5 (acetate uptake transporter family protein n=1 Tax=Rhodococcus sp. X156 TaxID=2499145 RepID=UPI000FD7C1A5) HSP 1 Score: 96.7 bits (239), Expect = 1.390e-21 Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 1 Query: 7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522 A+PAPLGL AF++T + L +D + V +ALF GG+AQ +AG++ R F A F SY AFW ++ + A ++L W IFT M S + A+ + LL A + LL G + + VLK GGY GLA +A AAY + + +A +G Sbjct: 19 ADPAPLGLAAFAMTTFVVSVFNADLLPADLDAVVLPLALFYGGIAQLLAGMWEFRNRNVFGATAFTSYGAFWLSYAAFVQFFHDELPPDTAHKAIGVFLLGWAIFTCYMLVASLRVSAAVALVFLLLAATFILLCTGEYMDSTSVLKWGGYVGLATAAAAAYASFAGVANATWG 192
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: UPI0019ECE2BF (acetate uptake transporter n=1 Tax=Rhodococcus sp. B50 TaxID=2682847 RepID=UPI0019ECE2BF) HSP 1 Score: 96.3 bits (238), Expect = 1.630e-21 Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFT-WGLMKLVGTWTAES--EDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522 A+P PLGL AF++T + S++ E V +ALF GGL Q AG++ +G F A F SY AFW + W L+ T+TAE + ++L WTIFT+ M+ S + AL T + ++ L G E + +VGGYFGLAA+AGA Y + + + +G Sbjct: 22 ADPGPLGLAAFALTTFILSSANAGFVSAEAEAAVFGVALFYGGLTQLAAGMWEFLKGNVFGATAFGSYGAFWLSFWYLV----TYTAEEMGSERHVGVGIFLLAWTIFTVYMWFASTRISTALFATFSVLLLAFVFLTLGALLEQTGLTRVGGYFGLAAAAGAWYTSAAGVLSTTFG 194
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A1G8XSH9_9ACTN (Uncharacterized protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A1G8XSH9_9ACTN) HSP 1 Score: 96.3 bits (238), Expect = 2.000e-21 Identity = 64/176 (36.36%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 7 ANPAPLGLCAFSITLAAM-MFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTW-GLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522 ANP PLGL AF++T + MF ++++ V +ALF GGLAQFVAG+F RRG TF+ F SY AFW ++ G +K V + D A +YL W +FT+ M + K +A +V + +++ LA G E + GG+ GL +A A Y + + E +G Sbjct: 31 ANPGPLGLAAFALTTFVLSMFNSGLISNAALSAVVLPLALFYGGLAQFVAGLFEFRRGNTFATTAFISYGAFWMSFAGYVKFVVP-GLPAADAHLATGLYLIAWFVFTLYMTVAAMKLDMAHKVVFVTLSLTFLFLALGDLAESTALAHTGGFLGLICAAAAWYTSFGVLTNETWG 205
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A5DT86_LODEL (Uncharacterized protein n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DT86_LODEL) HSP 1 Score: 96.7 bits (239), Expect = 3.690e-21 Identity = 63/181 (34.81%), Postives = 91/181 (50.28%), Query Frame = 1 Query: 7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKL--VGTWTAESED---FDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVL--KVGGYFGLAASAGAAYIATSAIAKENYGFY 528 ANP PLGLCAF IT + ++ N V +A+F GGLAQF+AG++ G TF SY AFW WG + + G A ++D A ++L+ W IFT ++ L+FK VA I+ LA G + V+ KVGG FG+ + A Y A + +A + ++ Sbjct: 67 ANPGPLGLCAFGITTFILCCYNARVGGITVPNAVLGMAVFYGGLAQFLAGIWEFFVGNTFGCTALTSYGAFWLAWGAIYIPSFGIRAAYADDPAQLTQAAGIFLTGWAIFTFMLTLLTFKTSVAFCTLFCSLTITFIFLAVGDYTGQVVCTKVGGVFGVITAFLAFYNAFAGVATKQNSYF 247 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7077 ID=mRNA_7077|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_54:506338..506886- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCGCTAACCCAGCCCCTCTCGGTCTGTGCGCATTTTCCATCACTCTback to top protein sequence of jgi.p|Trimin1|167999 >Trimin1|167999|e_gw1.54.60.1 ID=Trimin1|167999|e_gw1.54.60.1|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVback to top mRNA from alignment at Contig_54:506338..506886- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7077 ID=mRNA_7077|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_54:506338..506886- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_54:506338..506886- >mRNA_7077 ID=mRNA_7077|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_54:506338..506886- (Tribonema minus UTEX_B_3156 )back to top |