mRNA_7077 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167999
Unique NamemRNA_7077
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A836CCL6_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL6_9STRA)

HSP 1 Score: 358 bits (920), Expect = 3.310e-125
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1
Query:    1 MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHCNT 546
            MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHCNT
Sbjct:    1 MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHCNT 182          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A835YTC0_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC0_9STRA)

HSP 1 Score: 177 bits (450), Expect = 8.270e-55
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 1
Query:  244 LVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHC 540
            +VGTWTAESEDFDTAE +YLSEWTIFTILMFCLSFKECVALRVT LLTA+S+ALLAAGRFD+DVLK GGYFGLAAS GAAY+ATSAIAKENYGFYFY+C
Sbjct:    1 MVGTWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAMSIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGFYFYYC 99          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A835YR69_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR69_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.640e-27
Identity = 65/189 (34.39%), Postives = 99/189 (52.38%), Query Frame = 1
Query:   19 PLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVG---------TWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFD------EDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHC 540
            PLGL AF +T   +M+VE       F + V C A+F GG AQ +AG++ +  G TFSA  F SY  FW  +G+++++           W   S  F+T E ++L++W + ++L F L+FK+  AL+   L   I+  LLA G  +      +D    GGY GL  +A A Y++   +  E YG  +  C
Sbjct:   23 PLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPGC 211          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A2N5KQX2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5KQX2_9ACTN)

HSP 1 Score: 101 bits (252), Expect = 1.540e-23
Identity = 62/175 (35.43%), Postives = 90/175 (51.43%), Query Frame = 1
Query:    7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFT-WGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRF--DEDVLKVGGYFGLAASAGAAYIATSAIAKENYG 522
            A+PAPLGL AF++T   +      L     E  V  +ALF GGLAQF+AG++  R   TF A  F SY AFW T W L         E++  DT    +L  W IFT  M+  SFK  +A+ +  LL  ++  +L  G     + V+++GGY G+  +  A Y + + +  +  G
Sbjct:   25 ADPAPLGLAAFALTTFMLSLFNAGLLDEAGEPIVFPLALFYGGLAQFLAGMWEYRNNNTFGATAFTSYGAFWLTFWALQTFYANRIPEAQ-LDTVVGWFLIAWGIFTAYMWIGSFKVSIAVNIVFLLLTVTFFVLGIGDLLGSDSVVRIGGYLGIVTALAAWYASAAGVLNDTIG 198          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A1F8LLN6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium GWC2_73_18 TaxID=1797616 RepID=A0A1F8LLN6_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 5.720e-22
Identity = 59/174 (33.91%), Postives = 90/174 (51.72%), Query Frame = 1
Query:    7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRF--DEDVLKVGGYFGLAASAGAAYIATSAIAKENYG 522
            A+PAPLGL AF++T   +      L  +     V  +ALF GGLAQ +AG++  R G TF A  F SY AFW ++           E+ D   A   +L  W IFT  M+  S +   ++ +  LL  ++  +L+A  F   E + ++GGY G+A +  A Y + +A+  E +G
Sbjct:   23 ADPAPLGLAAFALTTFVLSVANAGLIGASSIQVVLGLALFYGGLAQLLAGMWEFRNGNTFGATAFSSYGAFWLSFAAFSFWFAPGLEAADRAGATGTFLLAWGIFTAYMWIASLRHAPSVMIVFLLLTVTFFVLSASDFAASEPLRRLGGYLGIATAFAAWYASAAAVIDEAFG 196          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A0V9UKH6_9NOCA (Uncharacterized protein n=13 Tax=Rhodococcus TaxID=1827 RepID=A0A0V9UKH6_9NOCA)

HSP 1 Score: 97.1 bits (240), Expect = 8.240e-22
Identity = 65/177 (36.72%), Postives = 93/177 (52.54%), Query Frame = 1
Query:    7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFT-WGLMKLVGTWTAESEDFD--TAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522
            A+P PLGL AF++T   +        S + E  V  +ALF GGL Q  AG++   +G  F A  F SY AFW + W L+    T+TAE    +      ++L  WTIFT+ M+  S +   AL VT  +  ++   L  G   E   + +VGGYFGLAA+AGA Y + + +    +G
Sbjct:   22 ADPGPLGLAAFALTTFILSCANAGFISVEAEAAVFGVALFYGGLTQLAAGMWEFLKGNVFGATAFSSYGAFWLSFWYLV----TYTAEEMGAERHVGVGIFLLAWTIFTVYMWFASTRISAALFVTFSVLLVAFVFLTLGALLEQTGLTRVGGYFGLAAAAGAWYTSAAGVLSTTFG 194          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: UPI000FD7C1A5 (acetate uptake transporter family protein n=1 Tax=Rhodococcus sp. X156 TaxID=2499145 RepID=UPI000FD7C1A5)

HSP 1 Score: 96.7 bits (239), Expect = 1.390e-21
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 1
Query:    7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522
            A+PAPLGL AF++T   +      L  +D +  V  +ALF GG+AQ +AG++  R    F A  F SY AFW ++             +    A  ++L  W IFT  M   S +   A+ +  LL A +  LL  G + +   VLK GGY GLA +A AAY + + +A   +G
Sbjct:   19 ADPAPLGLAAFAMTTFVVSVFNADLLPADLDAVVLPLALFYGGIAQLLAGMWEFRNRNVFGATAFTSYGAFWLSYAAFVQFFHDELPPDTAHKAIGVFLLGWAIFTCYMLVASLRVSAAVALVFLLLAATFILLCTGEYMDSTSVLKWGGYVGLATAAAAAYASFAGVANATWG 192          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: UPI0019ECE2BF (acetate uptake transporter n=1 Tax=Rhodococcus sp. B50 TaxID=2682847 RepID=UPI0019ECE2BF)

HSP 1 Score: 96.3 bits (238), Expect = 1.630e-21
Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 1
Query:    7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFT-WGLMKLVGTWTAES--EDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522
            A+P PLGL AF++T   +        S++ E  V  +ALF GGL Q  AG++   +G  F A  F SY AFW + W L+    T+TAE    +      ++L  WTIFT+ M+  S +   AL  T  +  ++   L  G   E   + +VGGYFGLAA+AGA Y + + +    +G
Sbjct:   22 ADPGPLGLAAFALTTFILSSANAGFVSAEAEAAVFGVALFYGGLTQLAAGMWEFLKGNVFGATAFGSYGAFWLSFWYLV----TYTAEEMGSERHVGVGIFLLAWTIFTVYMWFASTRISTALFATFSVLLLAFVFLTLGALLEQTGLTRVGGYFGLAAAAGAWYTSAAGVLSTTFG 194          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A0A1G8XSH9_9ACTN (Uncharacterized protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A1G8XSH9_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 2.000e-21
Identity = 64/176 (36.36%), Postives = 94/176 (53.41%), Query Frame = 1
Query:    7 ANPAPLGLCAFSITLAAM-MFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTW-GLMKLVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDED--VLKVGGYFGLAASAGAAYIATSAIAKENYG 522
            ANP PLGL AF++T   + MF    ++++     V  +ALF GGLAQFVAG+F  RRG TF+   F SY AFW ++ G +K V      + D   A  +YL  W +FT+ M   + K  +A +V  +  +++   LA G   E   +   GG+ GL  +A A Y +   +  E +G
Sbjct:   31 ANPGPLGLAAFALTTFVLSMFNSGLISNAALSAVVLPLALFYGGLAQFVAGLFEFRRGNTFATTAFISYGAFWMSFAGYVKFVVP-GLPAADAHLATGLYLIAWFVFTLYMTVAAMKLDMAHKVVFVTLSLTFLFLALGDLAESTALAHTGGFLGLICAAAAWYTSFGVLTNETWG 205          
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Match: A5DT86_LODEL (Uncharacterized protein n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DT86_LODEL)

HSP 1 Score: 96.7 bits (239), Expect = 3.690e-21
Identity = 63/181 (34.81%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 ANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFVAGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKL--VGTWTAESED---FDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVL--KVGGYFGLAASAGAAYIATSAIAKENYGFY 528
            ANP PLGLCAF IT   +     ++      N V  +A+F GGLAQF+AG++    G TF      SY AFW  WG + +   G   A ++D      A  ++L+ W IFT ++  L+FK  VA         I+   LA G +   V+  KVGG FG+  +  A Y A + +A +   ++
Sbjct:   67 ANPGPLGLCAFGITTFILCCYNARVGGITVPNAVLGMAVFYGGLAQFLAGIWEFFVGNTFGCTALTSYGAFWLAWGAIYIPSFGIRAAYADDPAQLTQAAGIFLTGWAIFTFMLTLLTFKTSVAFCTLFCSLTITFIFLAVGDYTGQVVCTKVGGVFGVITAFLAFYNAFAGVATKQNSYF 247          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167999 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCL6_9STRA3.310e-125100.00GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A835YTC0_9STRA8.270e-5588.89GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A835YR69_9STRA4.640e-2734.39GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A2N5KQX2_9ACTN1.540e-2335.43Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A1F8LLN6_9CHLR5.720e-2233.91Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A0V9UKH6_9NOCA8.240e-2236.72Uncharacterized protein n=13 Tax=Rhodococcus TaxID... [more]
UPI000FD7C1A51.390e-2135.06acetate uptake transporter family protein n=1 Tax=... [more]
UPI0019ECE2BF1.630e-2136.16acetate uptake transporter n=1 Tax=Rhodococcus sp.... [more]
A0A1G8XSH9_9ACTN2.000e-2136.36Uncharacterized protein n=3 Tax=Streptomyces TaxID... [more]
A5DT86_LODEL3.690e-2134.81Uncharacterized protein n=1 Tax=Lodderomyces elong... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:506338..506886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167999|e_gw1.54.60.1
BRITEko00000
KEGG koko:K07034
DescriptionPFAM GPR1 FUN34 yaaH family
COG categoryS
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG1584@1|root,COG1584@2|Bacteria,2IIIX@201174|Actinobacteria
Evalue6.72e-25
Seed ortholog1157638.KB892165_gene3571
Hectar predicted targeting categorysignal peptide
TranscriptId168321
TrackFilteredModels1
ProteinId167999
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167999gene_7077Tribonema minus UTEX_B_3156 geneContig_54 506338..506886 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7077_1exon_7077_1Tribonema minus UTEX_B_3156 exonContig_54 506338..506886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7077CDS_7077Tribonema minus UTEX_B_3156 CDSContig_54 506338..506886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167999Trimin1|167999|e_gw1.54.60.1Tribonema minus UTEX_B_3156 polypeptideContig_54 506338..506886 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7077 ID=mRNA_7077|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_54:506338..506886- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTAACCCAGCCCCTCTCGGTCTGTGCGCATTTTCCATCACTCT
AGCGGCGATGATGTTTGTAGAAACAAAACTTGCATCAAGTGATTTCGAGA
ATTATGTTGCGTGCATTGCACTGTTTACCGGTGGACTGGCTCAGTTTGTT
GCAGGCGTGTTTACACTTCGCAGGGGCACGACATTTTCTGCGGTCATCTT
CTGTTCGTACGCCGCATTCTGGTTCACGTGGGGTCTAATGAAGTTGGTAG
GCACTTGGACCGCTGAATCCGAAGACTTTGATACGGCAGAACCTATGTAC
CTGTCAGAGTGGACAATCTTCACAATTCTCATGTTCTGCCTCTCATTCAA
GGAATGTGTAGCACTTCGAGTTACCATTCTACTGACTGCCATCAGCATGG
CATTGCTCGCCGCCGGACGCTTTGATGAAGACGTACTGAAAGTTGGCGGA
TATTTCGGTCTGGCAGCATCAGCGGGAGCGGCGTACATAGCAACATCTGC
AATCGCAAAGGAAAACTACGGGTTCTATTTTTATCATTGCAACACGTAA
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protein sequence of jgi.p|Trimin1|167999

>Trimin1|167999|e_gw1.54.60.1 ID=Trimin1|167999|e_gw1.54.60.1|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp
MSANPAPLGLCAFSITLAAMMFVETKLASSDFENYVACIALFTGGLAQFV
AGVFTLRRGTTFSAVIFCSYAAFWFTWGLMKLVGTWTAESEDFDTAEPMY
LSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGG
YFGLAASAGAAYIATSAIAKENYGFYFYHCNT*
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mRNA from alignment at Contig_54:506338..506886-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7077 ID=mRNA_7077|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_54:506338..506886- (Tribonema minus UTEX_B_3156 )
ATGAGCGCTAACCCAGCCCCTCTCGGTCTGTGCGCATTTTCCATCACTCT AGCGGCGATGATGTTTGTAGAAACAAAACTTGCATCAAGTGATTTCGAGA ATTATGTTGCGTGCATTGCACTGTTTACCGGTGGACTGGCTCAGTTTGTT GCAGGCGTGTTTACACTTCGCAGGGGCACGACATTTTCTGCGGTCATCTT CTGTTCGTACGCCGCATTCTGGTTCACGTGGGGTCTAATGAAGTTGGTAG GCACTTGGACCGCTGAATCCGAAGACTTTGATACGGCAGAACCTATGTAC CTGTCAGAGTGGACAATCTTCACAATTCTCATGTTCTGCCTCTCATTCAA GGAATGTGTAGCACTTCGAGTTACCATTCTACTGACTGCCATCAGCATGG CATTGCTCGCCGCCGGACGCTTTGATGAAGACGTACTGAAAGTTGGCGGA TATTTCGGTCTGGCAGCATCAGCGGGAGCGGCGTACATAGCAACATCTGC AATCGCAAAGGAAAACTACGGGTTCTATTTTTATCATTGCAACACGTAA
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Coding sequence (CDS) from alignment at Contig_54:506338..506886-

>mRNA_7077 ID=mRNA_7077|Name=jgi.p|Trimin1|167999|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_54:506338..506886- (Tribonema minus UTEX_B_3156 )
ATGAGCGCTAACCCAGCCCCTCTCGGTCTGTGCGCATTTTCCATCACTCT
AGCGGCGATGATGTTTGTAGAAACAAAACTTGCATCAAGTGATTTCGAGA
ATTATGTTGCGTGCATTGCACTGTTTACCGGTGGACTGGCTCAGTTTGTT
GCAGGCGTGTTTACACTTCGCAGGGGCACGACATTTTCTGCGGTCATCTT
CTGTTCGTACGCCGCATTCTGGTTCACGTGGGGTCTAATGAAGTTGGTAG
GCACTTGGACCGCTGAATCCGAAGACTTTGATACGGCAGAACCTATGTAC
CTGTCAGAGTGGACAATCTTCACAATTCTCATGTTCTGCCTCTCATTCAA
GGAATGTGTAGCACTTCGAGTTACCATTCTACTGACTGCCATCAGCATGG
CATTGCTCGCCGCCGGACGCTTTGATGAAGACGTACTGAAAGTTGGCGGA
TATTTCGGTCTGGCAGCATCAGCGGGAGCGGCGTACATAGCAACATCTGC
AATCGCAAAGGAAAACTACGGGTTCTATTTTTATCATTGCAACACGTAA
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