mRNA_6672 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: A0A835Z8T5_9STRA (Methyltransferase type 12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8T5_9STRA) HSP 1 Score: 574 bits (1479), Expect = 4.000e-205 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 3
Query: 36 MEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEKDSNWVNGDGDES 986
MEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEKDSNWVNGDGDES
Sbjct: 1 MEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEKDSNWVNGDGDES 317
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: D8LRQ6_ECTSI (Methyltransferase type 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ6_ECTSI) HSP 1 Score: 263 bits (673), Expect = 2.210e-83 Identity = 142/308 (46.10%), Postives = 194/308 (62.99%), Query Frame = 3
Query: 36 MEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALK---AAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEK 950
M++ + L E+++A + M++NL++SLG A+VY PDAGN DTNRKLWD YA+EW DASWVQ MA+GS+ VG+EWST D++M+V+ +FILP + +S E+GCGGGRV V+V+ L C+DIS ML R A+ AG LL+ P LP A+DS DF+ +DVLVHVDLH++ +Y+RE+ R L G+AFLS A+ S GW+RF Q K++VGGFYFMCP+MVR ++ KAGLR+VREG + + N YYNRD+L++V+K
Sbjct: 1 MQECVDTLTEKSKAG-NEMVSNLVQSLGSALVY-PDAGNFDTNRKLWDNYAAEWEPDASWVQKMAQGSKT--------------------------------ERLEVVGDEWSTRDDVMRVINDFILPNVTEESNVGEIGCGGGRVTVEVFRKAGQLTCFDISKNMLKRTRDAVGEGVCAGGGKVIFVLLSQPRLPENASDSLDFVILYDVLVHVDLHITNKYIREIARVLKPGGKAFLSTANFLSPGGWDRFNAQDKYSVGGFYFMCPDMVRLMLDKAGLRVVREGDHDPS--NSYYNRDYLVLVQK 272
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: A0A7S2UUH0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUH0_9STRA) HSP 1 Score: 241 bits (616), Expect = 7.100e-75 Identity = 127/288 (44.10%), Postives = 177/288 (61.46%), Query Frame = 3
Query: 90 MIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPG-DGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEK 950
M +LI SLG A+VY PD GN TN+KLW+ YA EWS WV+D+AR + D G S+ VG+EWS +L +++++F+ Y++ D AE+GCGGGR+A +V P V +DCYDIS +M+++ AL N +L P+ YDF+YCFDV+VH+DLH+ +Y E+ R L + G+AF+S A++ S GW RF++Q K+TVGGFYF+CPEMVRF++ K GLR V+EGP E +T NVY NRD+L++VEK
Sbjct: 1 MAMSLINSLGSALVY-PDQGNFVTNKKLWNLYAQEWSPSEDWVKDIARPNNSSQDIGSSSNEVDELKF----------------------VGQEWSPDTDLEEILQQFVYDYIDEDKLVAEIGCGGGRLAAKVAPRVKKMDCYDISKEMISQAEKALSFLS--NVDFHILEEPSFSKNCEKLYDFIYCFDVMVHMDLHLINKYFGEIGRALKDDGKAFISTANITSTGGWARFSKQRKYTVGGFYFLCPEMVRFLLHKNGLRPVKEGPIEEST-NVYLNRDYLVLVEK 262
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: A0A7S2SUS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUS9_9STRA) HSP 1 Score: 237 bits (605), Expect = 1.350e-72 Identity = 132/306 (43.14%), Postives = 180/306 (58.82%), Query Frame = 3
Query: 33 TMEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEK 950
T+E EE+L +A SPM+ L+KSL QA+VY PDAGN DTNRKLWD YA EW W+Q M+R + VG+EW+ L +VV++FIL ++ + E+G GGGRVA +V PHV +L C DIS +ML RC L+A N + LT P P ++ F+Y FDV VHVDLH+ +YL E+ + L G+AF+S A++ + GWERFARQSK+TVGGFYF+CP+MV ++ K GLRI+R + + NVYY+RD+L++V+K
Sbjct: 7 TLEDVEERLRGKAAQEGSPMVLELLKSLNQAVVY-PDAGNFDTNRKLWDLYAGEWDPAQPWLQQMSRDVQAS-----------------------------LEQDIHIVGDEWAPPTHLDRVVQDFILTEVDSSCQVLEVGSGGGRVAARVAPHVGHLKCADISMEMLKRCRDTLQAH--TNISFLHLTQPRFPDHLHGTFHFVYVFDVFVHVDLHLIHQYLSEIYKLLVPGGKAFISTANLMTSGGWERFARQSKYTVGGFYFLCPDMVNRLIDKNGLRILRHADEDPS--NVYYSRDYLVLVQK 278
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: F0XX81_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX81_AURAN) HSP 1 Score: 205 bits (521), Expect = 2.370e-60 Identity = 122/319 (38.24%), Postives = 178/319 (55.80%), Query Frame = 3
Query: 36 MEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAA-------------ADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVRE-GPPEGTTDNVYYNRDFLIVVEK 950
M+ +EQ + M+ +++SL A++Y P+AGN+ TN KLWD YASEW ++A WV +MA +R DG + A VG+EW+ +VV E+IL + P++R E+G GGGR+A V P V++L C D+S +ML R AAL A G + L+ A P+ A A +DF+YCFDV+VH+D H +R LR V L + GRAF+S A++ + G+ RF +QSK++VGGF+F+ PE VR + KAGL +VRE P+ + N YYNRD+L ++ +
Sbjct: 1 MQAEQEQYLRKVAGKGQEMVQQMVQSLSSALIY-PEAGNVATNEKLWDVYASEWGKEAPWVVEMAATNR--DGAVALDA----------------------------VGDEWAPRAHTERVVDEWILSEVTPEARCCEIGSGGGRIAALVAPRVASLACCDVSAKMLARAEAAL-AGGPAATSFHLVHGDAAPSDAGFGAGPRAYPPTMARGFDFVYCFDVMVHLDAHAMYRCLRRVESLLADGGRAFVSTANLKAPDGFARFEKQSKYSVGGFFFVTPETVRVLADKAGLAVVRELDAPDAS--NTYYNRDYLAILAR 285
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: W7TSG7_9STRA (Deacetylase sulfotransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSG7_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.430e-58 Identity = 123/311 (39.55%), Postives = 169/311 (54.34%), Query Frame = 3
Query: 90 MIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNAT-LQLLTA-----PALPAAAAD-------SYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGP-PEGTTD----------NVYYNRDFLIVVEK 950
++ ++I SL A+VY D GN++TNR+LW+ YA EW + + + +R A +G+EWS+ ++L +VVR+FILPYL P+S E+G GGGRVA V L C DIS +ML AL A A AT L+ + P+LP+ + DF+YCFDVLVHVD+H + LRE+RR L G+AFLS A++ S GW RFA Q K+TVGGFYF+ PE+V ++AK G R+V+ PEG + N+YY RD+L+VVEK
Sbjct: 68 IVRSVINSLSGAMVY-TDVGNVETNRRLWNRYAEEWHGNCARNGPYSGSARSPSSELPANKPNVWVQQMAANTAKTSKSTPYSLPALALIGQEWSSPEDLEEVVRDFILPYLTPESAVVEVGVGGGRVAALVLGKCMRLTCLDISERMLEAARTALAAHPAAGATVLEFILVGNDSNPSLPSQRVEYPVSLHGRCDFVYCFDVLVHVDVHTLYHTLREIRRLLKASGKAFLSTANILSPAGWRRFAAQDKYTVGGFYFVSPEIVHGMLAKVGFRVVQHSEIPEGFKELSDTHGLAKGNLYYGRDYLVVVEK 377
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: A0A7S2F3I0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3I0_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.690e-55 Identity = 98/198 (49.49%), Postives = 138/198 (69.70%), Query Frame = 3
Query: 357 VGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEK 950
VG+EW+ L ++V EFI P++N ++ A E+G GGGRVA V PHV++L C DIS +MLTR AL+ + N T LLT P+ P + DF+Y FDV VH+DLH+ ++YL E+RR L GRAF+S A++ + GW+RF RQSKFTVGGFYF+ PE+V ++ ++GLR+V GP + + NVY +RD+L V+E+
Sbjct: 24 VGDEWAPPGHLERIVDEFIRPFVNAETVALEIGSGGGRVARCVAPHVASLCCADISEKMLTRAKVALEESP--NVTFMLLTRPSFPPRLDATLDFIYAFDVFVHMDLHLLFKYLGEMRRLLKPGGRAFMSTANLLTPGGWQRFERQSKFTVGGFYFLSPEIVNSLIERSGLRLVMTGPEDAS--NVYLSRDYLTVLER 217
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: A0A812TK35_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812TK35_9DINO) HSP 1 Score: 192 bits (488), Expect = 3.440e-55 Identity = 116/309 (37.54%), Postives = 166/309 (53.72%), Query Frame = 3
Query: 36 MEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSR---AAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPA-LPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEK 950
+EQ E L ++ +PM+ L+K L + VY DA N +TNRKLWDAYA WS D +WVQ M+ G S AA VG+EWS + L V+ +++ P+L + + AE+G GGGR+A +V P V L C+D+S ML R ++ + G R+ QL+ A P +DF+Y FDV VH+DLH + L VR L G F+SFA++ + GW+RFA+Q K++VGGFYF+ P++VR ++ AG +VR P+ N Y NRD L++ K
Sbjct: 31 LEQVEAMLVAESEGRQNPMVLELLKDLQKCAVY-TDAPNHETNRKLWDAYAQSWSSDVAWVQRMS-------GHVSREAAALKF-----------------------VGDEWSDVESLDAVLSDWLYPHLEDEQKLKTVAEVGSGGGRIAARVAPKVERLVCFDVSEGMLARASSRIAELGHRHVEFQLVHGGAPYPEEYHTFFDFVYSFDVFVHMDLHQMRQTLHCVRAILRPGGLCFISFANLLAPDGWQRFAKQQKYSVGGFYFVSPDIVRCLLTHAGFSLVRMSKPQA--GNTYLNRDLLVLARK 306
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: A0A8J2SCW4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCW4_9STRA) HSP 1 Score: 191 bits (485), Expect = 9.940e-53 Identity = 116/313 (37.06%), Postives = 165/313 (52.72%), Query Frame = 3
Query: 48 EEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAALKAAGARNATLQLLTAPALPAAAADS-------------YDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVRE-GPPEGTTDNVYYNRDFLIVV 944
EE L E A M+ +++ L A++Y PDAGN+ TN KLWD YASEW +A WV MA +R VG+EW+ + +VV E+IL ++ + E+G GGGR+ V P VS L C+D+S +ML AL A N T + A A A S YDF+YCFDV+VH+D H +R L+ +R L + G+AF+S +++ + G+ RF Q K++VGGFYF+ PE VR +V++AGLR+VRE P+ + N YYNRD+L ++
Sbjct: 6 EEYLREAA-GRGHEMVQQMVQKLSGALIY-PDAGNVQTNEKLWDVYASEWGAEAGWVAGMAASNREAK------------------------------ETLENVGDEWAPAAHTKRVVDEWILSEVSLKTHCCEIGSGGGRIGRMVAPRVSKLQCFDVSAKMLAAAKQAL--ASQENVTFAQIHGDASGADAGFSDKPRHYAPQHKHAYDFVYCFDVMVHMDAHAMFRCLKRIRALLKDEGKAFISTSNLLAPDGFRRFEAQEKYSVGGFYFVTPETVRCLVSRAGLRVVRELSAPDAS--NTYYNRDYLALL 282
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Match: A0A6A7GCB0_9CRUS (Methyltransferase type 12 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GCB0_9CRUS) HSP 1 Score: 184 bits (466), Expect = 4.590e-52 Identity = 105/305 (34.43%), Postives = 162/305 (53.11%), Query Frame = 3
Query: 48 EEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAAL--KAAGARNATLQLLT--APALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCSRLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEK 950
E ++ +++ + I NL+K+LG ++VY + N+ N+KLWD YA +WS + WVQ MA GS P+ +G+EWS ++VV FI+ + E+G GGGRVA V P VS+L C+D+S +ML +CA K R L+ T P P ++DF+Y FDVLVHVD+H + Y +++ + L G+A + A++C+ GW+RF +Q KF+V GFYF+ P++V ++AK+G I+ + NVY +RD+ +VV K
Sbjct: 13 ESLISSQSKHDGTSQIRNLLKNLGASVVY--EESNVVANKKLWDIYAKDWSPNKDWVQRMAHGSTESSSTPNIDGKKRGIEC---------------------LGDEWSDRKSFLEVVDRFIVSNIKKSDSVLEIGSGGGRVASLVCPLVSSLHCFDVSSEML-KCAQKTLSKFNNVRFTLLESSTDSPPTFPIKLTSTFDFVYLFDVLVHVDIHTQFNYFQQIFQLLKPDGKALIHTANLCAPNGWKRFEKQKKFSVAGFYFVTPDLVDLLLAKSGFEIIERSSIDER--NVYLSRDYFVVVRK 291 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348499 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6672 ID=mRNA_6672|Name=jgi.p|Trimin1|348499|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1094bp|location=Sequence derived from alignment at Contig_25:606082..611469- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCAGTGCGCTGCCGAGAGCCAGGACTGGTTGAACGATGGAGCAGGCGGAAback to top protein sequence of jgi.p|Trimin1|348499 >Trimin1|348499|estExt_Genemark1.C_Ctg_250080 ID=Trimin1|348499|estExt_Genemark1.C_Ctg_250080|Name=jgi.p|Trimin1|348499|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=318bp MEQAEEQLAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYback to top mRNA from alignment at Contig_25:606082..611469- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6672 ID=mRNA_6672|Name=jgi.p|Trimin1|348499|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5388bp|location=Sequence derived from alignment at Contig_25:606082..611469- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_25:606082..611469- >mRNA_6672 ID=mRNA_6672|Name=jgi.p|Trimin1|348499|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=954bp|location=Sequence derived from alignment at Contig_25:606082..611469- (Tribonema minus UTEX_B_3156 )back to top |