mRNA_6670 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163380
Unique NamemRNA_6670
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A835YZU8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZU8_9STRA)

HSP 1 Score: 397 bits (1021), Expect = 8.870e-140
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1 
Query:    1 MDVDEDAGESSXXXXXXXXXXXXXXXXEGGGVKLLGIGGRRTKKTGKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            MDVDEDAGESSXXXXXXXXXXXXXXXXEGGGVKLLGIGGRRTKKTGKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV
Sbjct:    1 MDVDEDAGESSXXXXXXXXXXXXXXXXEGGGVKLLGIGGRRTKKTGKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 207
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A6H5JA52_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA52_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 2.480e-99
Identity = 141/180 (78.33%), Postives = 159/180 (88.33%), Query Frame = 1 
Query:   88 GGVKLLGIGGRRTKK-TGKAP-PKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            G + +LGIGGRR K+ + KA   KKTPGEIRIQKDIA+LDGG+VA ITFP+PNNL  F+V V PDSG+WKGASY+FTFTIP  YPHDPPKVLC TKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYR+NI++F+R V+RTL GC M+G+ F RL+
Sbjct:   43 GKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 222
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A6V1TYK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TYK4_HETAK)

HSP 1 Score: 284 bits (726), Expect = 1.760e-94
Identity = 135/208 (64.90%), Postives = 161/208 (77.40%), Query Frame = 1 
Query:    1 MDVDEDAGESSXXXXXXXXXXXXXXXXEGGGVKLLGIGGRRTKKTG-KAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            MDV++++                      GGVKLLGIGG++++  G K   K+TPGE+RIQKDIAELDGG VA ITFP+PNNL  FEV VTPD+G W+GA+Y+FTF IP  YPH+PPKV C+TKIYHPNINLQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLN EAAELYRN+  +F+R+VRR+LQG ++  + F RL+
Sbjct:   24 MDVEQESTNGGDAKADDQDESKGGESKSSGGVKLLGIGGKKSRTGGAKKTKKRTPGELRIQKDIAELDGGNVAVITFPNPNNLTSFEVRVTPDTGMWRGATYHFTFAIPAMYPHEPPKVHCHTKIYHPNINLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNREAAELYRNDARQFERVVRRSLQGYSVGAEQFERLI 231
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: B7G8G3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8G3_PHATC)

HSP 1 Score: 273 bits (697), Expect = 3.110e-90
Identity = 126/178 (70.79%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:   94 VKLLGIGGRRTKKTG--KAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            V LLG+GG++  K G  KA  K++PGEIRIQKDIAELDGG VATI FP+ N+L  F V ++PDSGYWKGA+Y+FTFTIP HYPH PPKV C TKIYHPNI+LQG VCLNILREDWKPVLDIN V+YGLIYLFYEPNP+DPLNHEAAEL+R ++ +F+R+V RTL+G  ++G  F RLV
Sbjct:   43 VSLLGVGGKKQTKNGECKATKKRSPGEIRIQKDIAELDGGNVATIDFPNANDLTSFHVAISPDSGYWKGATYHFTFTIPPHYPHSPPKVECQTKIYHPNIDLQGKVCLNILREDWKPVLDINGVVYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVSRTLRGGILDGVQFERLV 220
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A7S2WHK2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHK2_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.740e-89
Identity = 130/172 (75.58%), Postives = 145/172 (84.30%), Query Frame = 1 
Query:  106 GIGGRRTKKTGKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            GIGG     TGK   K+TPGEIRIQKDIAELDGGTVAT  FP+ ++L KF V+VTPDSG+WKGA+Y F FTIPG YPH+ PKVLC T+IYHPNINL+GNVCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAA+LYR NIA FQR V+RTL+G  + G  F RLV
Sbjct:   70 GIGGTAVT-TGKKKKKRTPGEIRIQKDIAELDGGTVATHEFPNESDLTKFYVVVTPDSGFWKGATYRFQFTIPGQYPHEAPKVLCQTRIYHPNINLEGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLYRTNIASFQRTVQRTLRGGTIQGVDFERLV 240
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A7S3KW38_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KW38_9STRA)

HSP 1 Score: 270 bits (691), Expect = 2.080e-89
Identity = 124/179 (69.27%), Postives = 151/179 (84.36%), Query Frame = 1 
Query:   94 VKLLGIGGRRTKK---TGKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            V LLG+GG++ K    +G    K+TPGEIRIQKDIAELDGG VATI FP+PN+L  F+V V PDSGYW+GA+Y+F+F +P HYPH+PPKV C+TKIYHPNI+LQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R ++ +F+R+V RTL+G  ++G  F +LV
Sbjct:   36 VSLLGVGGKKKKNENGSGTGGKKRTPGEIRIQKDIAELDGGKVATIEFPNPNDLTAFDVRVCPDSGYWQGATYHFSFNVPSHYPHEPPKVECHTKIYHPNIDLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVNRTLRGGVLDGVQFEKLV 214
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A448YW25_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW25_9STRA)

HSP 1 Score: 270 bits (689), Expect = 4.790e-89
Identity = 127/182 (69.78%), Postives = 146/182 (80.22%), Query Frame = 1 
Query:   82 EGGG-VKLLGIGG-RRTKKTGKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            EGGG V L GIGG ++TKK   +  KKTPGEIRIQKDI ELDGG VA +TFP PN+L  F V +TPD+GYWKGA Y F F +P HYPH PPKV C T IYHPNI+LQG VCLNILREDW+PVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R +I  F+R+V RTL+G  ++G  F RLV
Sbjct:   37 EGGGQVSLFGIGGQKKTKKGESSATKKTPGEIRIQKDIGELDGGKVAEVTFPKPNDLTSFNVSITPDTGYWKGARYEFEFKVPAHYPHSPPKVECKTSIYHPNIDLQGKVCLNILREDWRPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDIQSFERLVNRTLRGGTLDGVTFERLV 218
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: K0T069_THAOC (UBC core domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T069_THAOC)

HSP 1 Score: 269 bits (687), Expect = 9.650e-89
Identity = 126/180 (70.00%), Postives = 146/180 (81.11%), Query Frame = 1 
Query:   94 VKLLGIGGRRTKKT----GKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            V LLGIGG++ K           K+TPGEIRIQKDIA+LDGG VA I FP+PNNL  FEV +TPDSGYWK A+YNF F IP HYPH PPKV C TKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLI+LFYEPNP+DPLNHEAA+L+R +I +F+R+V+RTL+G  M+G  F RL+
Sbjct:   39 VSLLGIGGKKKKANDGNGASGKKKRTPGEIRIQKDIADLDGGKVANIEFPNPNNLTAFEVSITPDSGYWKNATYNFKFDIPDHYPHTPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIFLFYEPNPDDPLNHEAADLFRRDIRQFERLVQRTLRGGVMDGVHFDRLI 218
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A7R9W2H1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2H1_9STRA)

HSP 1 Score: 270 bits (690), Expect = 1.420e-88
Identity = 128/179 (71.51%), Postives = 147/179 (82.12%), Query Frame = 1 
Query:   94 VKLLGIGGRRTKKTGK---APPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            V +LGIGG++ K  G+   +  K+TPGEIRIQKDIAELDGG VATI FP+PN+L  F V VTPD+G+WKGASY FTF IP HYPH PPKV C TKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R ++ +FQR+V RTL G  ++   F RLV
Sbjct:   83 VSILGIGGKKKKDKGENSSSSKKRTPGEIRIQKDIAELDGGKVATIDFPNPNDLTTFHVRVTPDTGFWKGASYLFTFQIPDHYPHSPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRRDVNQFQRLVSRTLSGGILDNVQFQRLV 261
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BLAST of jgi.p|Trimin1|163380 vs. uniprot
Match: A0A1Z5K9J7_FISSO (Ubiquitin-conjugating enzyme E2 M n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9J7_FISSO)

HSP 1 Score: 268 bits (685), Expect = 1.880e-88
Identity = 127/179 (70.95%), Postives = 150/179 (83.80%), Query Frame = 1 
Query:   94 VKLLGIGGRRTKKTGKAP---PKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 621
            V LLGIGG++  K G++     K+TPGEIRIQ DIAELDGG VATI FP+PN+L  F+V VTPD+G WKGA+Y+FTFTIP HYPH PP+V CNTKIYHPNI+LQG VCLNILREDWKPVLDIN+VIYGLIYLFYEPNP+DPLNHEAAEL+R +  +F+R+V RTL+G  ++G  F RLV
Sbjct:   39 VSLLGIGGKKMVKNGESGMTGKKRTPGEIRIQTDIAELDGGDVATIKFPNPNDLTLFDVSVTPDTGLWKGATYHFTFTIPPHYPHSPPRVECNTKIYHPNIDLQGKVCLNILREDWKPVLDINSVIYGLIYLFYEPNPDDPLNHEAAELFRKDKTQFERLVMRTLRGGILDGVHFERLV 217
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163380 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZU8_9STRA8.870e-140100.00Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6H5JA52_9PHAE2.480e-9978.33UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A6V1TYK4_HETAK1.760e-9464.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B7G8G3_PHATC3.110e-9070.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2WHK2_9STRA1.740e-8975.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3KW38_9STRA2.080e-8969.27Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448YW25_9STRA4.790e-8969.78UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
K0T069_THAOC9.650e-8970.00UBC core domain-containing protein n=2 Tax=Thalass... [more]
A0A7R9W2H1_9STRA1.420e-8871.51Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5K9J7_FISSO1.880e-8870.95Ubiquitin-conjugating enzyme E2 M n=2 Tax=Fistulif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:593771..595371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163380|e_gw1.25.150.1
CAZyGT2
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
KEGG rclassRC00005,RC00726,RC00836,RC00837,RC01726
KEGG ReactionR02335,R03051,R04439,R04440,R05068,R05069,R05071
KEGG ModuleM00019,M00570
KEGG Pathwayko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120
KEGG koko:K00053,ko:K00573,ko:K00698,ko:K10579
EC1.1.1.86,2.1.1.77,2.4.1.16
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
Preferred nameUBE2M
DescriptionNEDD8 transferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0420@1|root,KOG0420@2759|Eukaryota
Evalue8.61e-100
Seed ortholog2880.D8LRS2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_002220.1
TranscriptId163702
TrackFilteredModels1
ProteinId163380
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163380gene_6670Tribonema minus UTEX_B_3156 geneContig_25 593771..595371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163380Trimin1|163380|e_gw1.25.150.1Tribonema minus UTEX_B_3156 polypeptideContig_25 593771..595371 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6670_2exon_6670_2Tribonema minus UTEX_B_3156 exonContig_25 593771..594024 -
exon_6670_1exon_6670_1Tribonema minus UTEX_B_3156 exonContig_25 595002..595371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6670CDS_6670Tribonema minus UTEX_B_3156 CDSContig_25 595002..595371 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6670 ID=mRNA_6670|Name=jgi.p|Trimin1|163380|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_25:593771..595371- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGGACGAGGACGCAGGGGAGAGCTCGGCGGCAGCAGCAGCGGC
GCCAGCAGAAGAAGGCGCTGGCGACGGCGGCGAAGGGGGAGGCGTCAAGC
TGTTGGGAATCGGCGGAAGGCGCACGAAGAAGACAGGCAAGGCGCCACCA
AAGAAAACGCCCGGGGAGATCCGCATCCAGAAGGATATCGCAGAGCTGGA
CGGCGGCACGGTGGCGACCATCACGTTCCCGGATCCCAACAACCTGTGCA
AATTTGAGGTGCTGGTGACGCCGGACTCAGGGTACTGGAAGGGCGCCAGC
TACAACTTTACGTTCACGATCCCTGGACACTACCCACACGACCCTCCCAA
GGTCCTGTGCAACACAAAAATATACCACCCCAACATCAACCTCCAGGGCA
ACGTGTGCCTCAACATCCTGCGCGAGGACTGGAAGCCCGTGCTCGACATC
AACGCCGTCATCTACGGCCTCATCTACCTCTTCTACGAGCCCAATCCGGA
GGACCCCCTCAACCACGAGGCCGCGGAGCTGTACCGCAACAACATCGCCG
AGTTCCAGCGCATCGTGCGCCGCACGCTGCAGGGCTGCAACATGAACGGC
CAGGTGTTCCCGCGACTCGTCTGA
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protein sequence of jgi.p|Trimin1|163380

>Trimin1|163380|e_gw1.25.150.1 ID=Trimin1|163380|e_gw1.25.150.1|Name=jgi.p|Trimin1|163380|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp
MDVDEDAGESSAAAAAAPAEEGAGDGGEGGGVKLLGIGGRRTKKTGKAPP
KKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGAS
YNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDI
NAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNG
QVFPRLV*
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mRNA from alignment at Contig_25:593771..595371-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6670 ID=mRNA_6670|Name=jgi.p|Trimin1|163380|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1601bp|location=Sequence derived from alignment at Contig_25:593771..595371- (Tribonema minus UTEX_B_3156 )
ATGGACGTGGACGAGGACGCAGGGGAGAGCTCGGCGGCAGCAGCAGCGGC
GCCAGCAGAAGAAGGCGCTGGCGACGGCGGCGAAGGGGGAGGCGTCAAGC
TGTTGGGAATCGGCGGAAGGCGCACGAAGAAGACAGGCAAGGCGCCACCA
AAGAAAACGCCCGGGGAGATCCGCATCCAGAAGGATATCGCAGAGCTGGA
CGGCGGCACGGTGGCGACCATCACGTTCCCGGATCCCAACAACCTGTGCA
AATTTGAGGTGCTGGTGACGCCGGACTCAGGGTACTGGAAGGGCGCCAGC
TACAACTTTACGTTCACGATCCCTGGACACTACCCACACGACCCTCCCAA
GGTCCTGTGCAACACAAAAAGTGAGTACAACTCCCTCTGTTCTGGCTTTG
CAGCTGTCGTCACTTGCCTCTAGTCTGAGTGCAAAAAATCCTGAATGGCG
TGCTTCGCTCTGCGCCATAAAATCATATGTGGGTGCTGAACGACTTGCAT
GAAGAGTCTGGTACGGAGGCGCTTCACCAGCCAGACATTAGTCGCTCCAT
CATTCGGCGACCAAGCAGTCAAGCCCCTTGCGCATTCTGCGAGTCTGCAG
CCTGCAATATGGCCATACCTGCACCATTGCAAGGCCGTACCGGGCCTGGA
ACGCTCAATGGACCTGAAGTCGTAGAGACCAGCTGATTCCAGGTACTTGA
AGCAAGTATCCCTGAGAGTTTGAAGTATGCGATGGACACCTCAGACTGTG
ACTATTGCAGCGACAATGCCGCATGTGATTTTAGGCGTTTTGCTGAATGT
GATTGCACAGTTCTGGGTCAATTTTCTCTGGCAGAATGGTTCTGTGGTCG
TCTGTGCATGTGCAGCCACTCACAGAACGTAGATGGCCTCATTCATCGGA
GACCTCAATGTGACGCTGCAGAGCGCCGCATGCATTCATTTGATGAGCAC
TTCGACGACCTTTTTGCTGCAATCCAGCCTATCTTTTGATGTCTTGCCTG
AGGCGAACGTGATGAGTGTTGCTTGCGAGGCTTGACAACGTGAAATTGAC
ATGGTGCGCGTTTGCCAAGGTCTGGCAAGAAGCTGCGCACCACAAAGCTG
CGCATCGAGGCGGTCAGCTGCCAGCCATCTTCTATCTTGTCACGCTACCT
CTGGTCTATCACCTGTGTGTCAGCCTCCGATTTGAGAGGCAGACATAACG
TAACTGCCGTTTGCTCCGTTTGGACAGCAGCTGGCCTCTCAGCATTTCTC
AACGCCACCGCCTGATGCCACAATGCTCGTTGGCTGTCCCGATTGCTCCT
AATGCCCCCCCCCCCCCCCCCCCCCATCCCCCCCCCCTGTGGCGCAGTAT
ACCACCCCAACATCAACCTCCAGGGCAACGTGTGCCTCAACATCCTGCGC
GAGGACTGGAAGCCCGTGCTCGACATCAACGCCGTCATCTACGGCCTCAT
CTACCTCTTCTACGAGCCCAATCCGGAGGACCCCCTCAACCACGAGGCCG
CGGAGCTGTACCGCAACAACATCGCCGAGTTCCAGCGCATCGTGCGCCGC
ACGCTGCAGGGCTGCAACATGAACGGCCAGGTGTTCCCGCGACTCGTCTG
A
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Coding sequence (CDS) from alignment at Contig_25:593771..595371-

>mRNA_6670 ID=mRNA_6670|Name=jgi.p|Trimin1|163380|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=624bp|location=Sequence derived from alignment at Contig_25:593771..595371- (Tribonema minus UTEX_B_3156 )
ATGGACGTGGACGAGGACGCAGGGGAGAGCTCGGCGGCAGCAGCAGCGGC
GCCAGCAGAAGAAGGCGCTGGCGACGGCGGCGAAGGGGGAGGCGTCAAGC
TGTTGGGAATCGGCGGAAGGCGCACGAAGAAGACAGGCAAGGCGCCACCA
AAGAAAACGCCCGGGGAGATCCGCATCCAGAAGGATATCGCAGAGCTGGA
CGGCGGCACGGTGGCGACCATCACGTTCCCGGATCCCAACAACCTGTGCA
AATTTGAGGTGCTGGTGACGCCGGACTCAGGGTACTGGAAGGGCGCCAGC
TACAACTTTACGTTCACGATCCCTGGACACTACCCACACGACCCTCCCAA
GGTCCTGTGCAACACAAAAATATACCACCCCAACATCAACCTCCAGGGCA
ACGTGTGCCTCAACATCCTGCGCGAGGACTGGAAGCCCGTGCTCGACATC
AACGCCGTCATCTACGGCCTCATCTACCTCTTCTACGAGCCCAATCCGGA
GGACCCCCTCAACCACGAGGCCGCGGAGCTGTACCGCAACAACATCGCCG
AGTTCCAGCGCATCGTGCGCCGCACGCTGCAGGGCTGCAACATGAACGGC
CAGGTGTTCCCGCGACTCGTCTGA
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