mRNA_6669 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348497
Unique NamemRNA_6669
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A835YZR0_9STRA (DUF4149 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR0_9STRA)

HSP 1 Score: 506 bits (1303), Expect = 3.400e-176
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 2 
Query:   17 MKPLAAFALLLVADVPSLAFVVRTPVGESLKQQHIATAFPANRSSTATTVLASTQNAEXXXXXXXXXXXXXXXXXXXXXXXXXXSGPKGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLARVRDAAA 916
            MKPLAAFALLLVADVPSLAFVVRTPVGESLKQQHIATAFPANRSSTATTVLASTQNAEXXXXXXXXXXXXXXXXXXXXXXXXXXSGPKGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLARVRDAAA
Sbjct:    1 MKPLAAFALLLVADVPSLAFVVRTPVGESLKQQHIATAFPANRSSTATTVLASTQNAEXXXXXXXXXXXXXXXXXXXXXXXXXXSGPKGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLARVRDAAA 300
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: D8LRR6_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR6_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.190e-49
Identity = 105/211 (49.76%), Postives = 138/211 (65.40%), Query Frame = 2 
Query:  269 SGPKGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLARV 901
            +GP GV  LS WDPS++QA   ++QPA+HN NPVRVAA++ A GLA++G++      +   VH+++    +GSTL+TTF AGI M +NLPRQTFGKLQSKLFP YF  N +  LA+ + + G      +   A V L  +L   L NL +LEP+ST +ML RY+LE+  +    EY  L + FGK HGMSS  NLGAL G+  YAW LA V
Sbjct:   49 AGPSGVQSLSKWDPSAQQA---FIQPAIHNKNPVRVAAILTAAGLASKGAMLVPGN-LAKMVHMVALNAWMGSTLWTTFFAGITMMRNLPRQTFGKLQSKLFPLYFQFNFVSILAIYI-IRGCP----LRTRAGVTLLVSLFSTLLNLVLLEPKSTSIMLERYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASV 250
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A0G4F9E7_VITBC (DUF4149 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F9E7_VITBC)

HSP 1 Score: 167 bits (424), Expect = 4.610e-45
Identity = 101/207 (48.79%), Postives = 131/207 (63.29%), Query Frame = 2 
Query:  278 KGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVP-LAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 895
            K +AGL  WDP        W+ PAVHN N VR+ AL++ + L A GS    S  +  FVH+L++   +GS +YTTF+AGI MF+NLPR+TFG+LQSKLFP YF    +C   ML+ L     +  +P  A +  LA ALV  L NLFVLEP+ST +M  RYE+E++G     EY  L++ FGK HG+SSL NL AL G  A+ W LA
Sbjct:   92 KQMAGLERWDPQV------WVAPAVHNRNSVRLLALLSTL-LLASGSTVFVSKQLTLFVHLLAYATWLGSVIYTTFVAGITMFRNLPRKTFGRLQSKLFPLYF---QLCT-GMLIVLLTTGGASVLPNRAMMANLAVALVMTLANLFVLEPKSTEIMFKRYEMEDQGRKDDPEYKALAKGFGKFHGLSSLTNLIALCGGVAHGWTLA 287
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A7S3RBJ6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RBJ6_9SPIT)

HSP 1 Score: 162 bits (410), Expect = 3.140e-44
Identity = 95/186 (51.08%), Postives = 119/186 (63.98%), Query Frame = 2 
Query:  335 WMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHL 892
            W+ PA+ N    R A++  A+ LAA GS     A M  F H++SFG L GS +YTTF AGI MFKNLPRQTFG+LQSKLFP YF L++     ML TL  ++S G +         +AL+  L NLF LEP+ST VM  RY+LEN G+ +  EY   ++ FG LHGMSSL NLGAL G  A++W L
Sbjct:    5 WVPPAIWNTPAFRAASIATALALAAAGS-RQLGARMAIFAHLISFGSLFGSMIYTTFFAGITMFKNLPRQTFGRLQSKLFPIYFKLHAASLCVMLGTLRAVASGGSLTRPV-YACGSALLFTLLNLFYLEPQSTKVMFTRYDLENEGKQESDEYKVAAKKFGPLHGMSSLANLGALIGVIAHSWWL 188
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A1Z5KI85_FISSO (DUF4149 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI85_FISSO)

HSP 1 Score: 145 bits (367), Expect = 1.980e-37
Identity = 94/199 (47.24%), Postives = 120/199 (60.30%), Query Frame = 2 
Query:  314 SRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPA----FVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPA-DAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 895
            S  +S +W +P +HN    R  AL++A+ LAA  S  S   ++PA     VH +SF    G+  YTTF+AGI MFKNLPRQTFGKLQ+KLFP YF L+S      L+TL  L +  G  A  +A  L  AL+  L N F LEP+ST  M+ RYELE++GE +   Y  L   FGK HGMSSL NL  L    A+A +L+
Sbjct:   32 SAVSSEEWTKPRLHNTATFRTIALLSAL-LAAGFSSKSPLKLLPAQVLGSVHTISFATWFGTVAYTTFVAGITMFKNLPRQTFGKLQAKLFPKYFALSSFTLALQLITLKSLKAMTGKAAHSSAKALGVALLMTLINQFFLEPKSTSNMMERYELEDKGEQESDRYKTLKANFGKFHGMSSLTNLIGLCAGVAHAVYLS 229
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A7S2ULJ3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULJ3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.400e-37
Identity = 98/207 (47.34%), Postives = 126/207 (60.87%), Query Frame = 2 
Query:  284 VAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGS-LASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAA-VPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAE-YDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 895
            V  L  WDP++      W +P        R  A++AA+ LA  GS L+  SA   A VH+LSF    GS ++TTFI GI M+KNLPRQTFG+LQSKLFP YF   ++CA+ +L+ +  LS    V +  A + L  A V  L NLFVLEP+ST VM  RYELE+    K +E Y  L+  FGKLHGMSSL NL  L  A A+ +++A
Sbjct:   65 VPSLPKWDPTNWTPKTFWNKPLF------RAGAILAALALAGFGSPLSKISATAAATVHLLSFSTWFGSVIFTTFIGGITMYKNLPRQTFGRLQSKLFPKYF---NLCAITILLQILTLSKIPDVLSKRAEIALGTAFVTTLLNLFVLEPKSTKVMFKRYELEDMPGGKDSEGYKELASTFGKLHGMSSLSNLIGLCAAVAHGFYIA 262
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A7S3L6U9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6U9_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.570e-37
Identity = 94/196 (47.96%), Postives = 118/196 (60.20%), Query Frame = 2 
Query:  311 SSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGA-EYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 895
            +S + S +W +  +HN    R  AL+ A+ LA   S  +  A   A +H+LSF    GS  YTTF+AGI MFKNLPRQTFGKLQ+KLFP YF L S   L  L+TL  L  +  + +  A+ LA   V  L N F+LEP ST  M+ RYELE++   K   EY  L  +FGK HGMSSL NL AL G  A+A +LA
Sbjct:   58 ASAEESTEWTKKRLHNTAAFRSLALLGALALAGFSSPTALPAKASASLHLLSFATWFGSVAYTTFVAGITMFKNLPRQTFGKLQAKLFPKYFALGSFTLLLQLITLPSLPVTIKMASTKALSLA--FVMTLVNQFLLEPMSTSNMMRRYELEDQDGGKDTDEYKTLKASFGKFHGMSSLTNLIALCGGVAHAVYLA 251
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A8J9RLF5_9CHLO (Probable transmembrane protein 205 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RLF5_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 3.180e-36
Identity = 89/196 (45.41%), Postives = 121/196 (61.73%), Query Frame = 2 
Query:  311 SSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELEN-RGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 895
            +S + S   ++P+  N N VR+A + AA+ +AAR S          F+H+L++G+ +GS ++TTFIAGI MFKNLPRQTFGKLQ+KLFP YF +     +  L TL      GG+     + L  ALVC+L N   +EP +T +M  RY LEN +GE   A+  +L + FGK HG+SSLLNL ALG    + W LA
Sbjct:   76 ASEELSGPMLEPSAFNKNWVRLAWVSAALIVAAR-STEFLPVKAAGFIHLLAWGVWLGSNVWTTFIAGITMFKNLPRQTFGKLQAKLFPQYFAVAIAAGVLQLGTL-AFGVPGGIAQTQLITLGTALVCSLANWLYVEPVATNLMFERYNLENVQGEKDAAKIKQLYKQFGKFHGISSLLNLVALGAVVGHGWWLA 269
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BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: I0YK71_COCSC (DUF4149 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YK71_COCSC)

HSP 1 Score: 141 bits (355), Expect = 1.210e-35
Identity = 86/198 (43.43%), Postives = 122/198 (61.62%), Query Frame = 2 
Query:  305 DPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENR-GEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 895
            +PS  + S   ++P+  N N VR+A + AA+ +AAR S       +  F+H++++G+ +GS ++TTFIAGI MFKNLPRQTFGKLQ+KLFP YF +     +  + TL      GG+    ++ L  A V +L N   +EP +T +M  RY LEN  GE   A+  +L + FGK HG+SSLLNL ALG   ++ W LA
Sbjct:   36 NPSGEELSGPMLEPSAFNKNWVRLAWVSAALVVAAR-STEFLPVNVAVFIHLMAWGLWLGSNIWTTFIAGITMFKNLPRQTFGKLQAKLFPQYFAVAIAAGVLQIGTL-AFGVPGGIARTQSITLGVAFVTSLANWLYVEPVATNLMFERYNLENAPGEKDSAKIKQLYKQFGKFHGISSLLNLVALGAVISHGWWLA 231
[Close]
BLAST of jgi.p|Trimin1|348497 vs. uniprot
Match: A0A7S2I6I8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I6I8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.670e-35
Identity = 95/210 (45.24%), Postives = 123/210 (58.57%), Query Frame = 2 
Query:  278 KGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARG---SLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAE-YDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLA 895
            K V  L  WDP++      W    +HN    R +A++A +G+A+     S    SA   A +H+L+F    GS  YTTFI GI MFKNLPR+TFGKLQSKLFP YF L ++  L  ++TL+ L +   V   A V L  +LV  + NLF LEP ST +M  RY LE     K  + Y +L+  FGK HGMSSL NL AL GA A+ ++LA
Sbjct:   90 KVVPDLPDWDPTN------WTPKRLHNTAFFRFSAMLATIGVASYAIGSSPVKVSAKASATIHILAFATWFGSMAYTTFIGGITMFKNLPRKTFGKLQSKLFPIYFNLCAITILLQILTLNFLPTV--VTKKATVALGVSLVMTVLNLFYLEPTSTKIMFERYALEETSGGKDTDKYKKLAANFGKFHGMSSLTNLIALCGAIAHGFYLA 291
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZR0_9STRA3.400e-176100.00DUF4149 domain-containing protein n=1 Tax=Tribonem... [more]
D8LRR6_ECTSI1.190e-4949.76DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0G4F9E7_VITBC4.610e-4548.79DUF4149 domain-containing protein n=1 Tax=Vitrella... [more]
A0A7S3RBJ6_9SPIT3.140e-4451.08Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A1Z5KI85_FISSO1.980e-3747.24DUF4149 domain-containing protein n=2 Tax=Fistulif... [more]
A0A7S2ULJ3_9STRA2.400e-3747.34Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3L6U9_9STRA2.570e-3747.96Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J9RLF5_9CHLO3.180e-3645.41Probable transmembrane protein 205 at C-terminar h... [more]
I0YK71_COCSC1.210e-3543.43DUF4149 domain-containing protein n=1 Tax=Coccomyx... [more]
A0A7S2I6I8_9STRA2.670e-3545.24Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:588189..592512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348497|estExt_Genemark1.C_Ctg_250077
BRITEko00000,ko00001,ko04031,ko04131,ko04147
KEGG Pathwayko04972,map04972
KEGG koko:K07884
Preferred nameTMEM205
DescriptionDomain of unknown function (DUF4149)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2886@1|root,KOG2886@2759|Eukaryota
Evalue3.49e-51
Seed ortholog2880.D8LRR6
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionDomain of unknown function DUF4149
Ec32 orthologEc-08_002150.1
TranscriptId348819
TrackFilteredModels1
ProteinId348497
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348497gene_6669Tribonema minus UTEX_B_3156 geneContig_25 588189..592512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348497Trimin1|348497|estExt_Genemark1.C_Ctg_250077Tribonema minus UTEX_B_3156 polypeptideContig_25 588380..592496 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6669_6exon_6669_6Tribonema minus UTEX_B_3156 exonContig_25 588189..588617 -
exon_6669_5exon_6669_5Tribonema minus UTEX_B_3156 exonContig_25 588655..588989 -
exon_6669_4exon_6669_4Tribonema minus UTEX_B_3156 exonContig_25 589647..589696 -
exon_6669_3exon_6669_3Tribonema minus UTEX_B_3156 exonContig_25 590086..590230 -
exon_6669_2exon_6669_2Tribonema minus UTEX_B_3156 exonContig_25 590675..590917 -
exon_6669_1exon_6669_1Tribonema minus UTEX_B_3156 exonContig_25 592389..592512 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6669UTR3_6669Tribonema minus UTEX_B_3156 three_prime_UTRContig_25 588189..588379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6669CDS_6669Tribonema minus UTEX_B_3156 CDSContig_25 592389..592496 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6669UTR5_6669Tribonema minus UTEX_B_3156 five_prime_UTRContig_25 592497..592512 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6669 ID=mRNA_6669|Name=jgi.p|Trimin1|348497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1326bp|location=Sequence derived from alignment at Contig_25:588189..592512- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGAGGCTGAGGGACCATGAAGCCACTGGCCGCCTTCGCTTTGCTTTTGG
TCGCGGATGTGCCTTCTCTGGCGTTTGTGGTGAGAACTCCTGTTGGGGAA
AGCCTGAAGCAGCAGCATATTGCGACGGCGTTCCCAGCCAACCGCAGCAG
CACCGCCACGACCGTCCTCGCGTCGACGCAGAACGCAGAGGACGCAGCGG
CAGCGGCCCCCGCGGCGCCGCCCGCCACCGCGGCGCCGCCCGCCACCACT
GCCGCCGCTGCGCCGCCCTCTGGCCCGAAGGGTGTGGCGGGGCTGAGTGC
GTGGGACCCGAGCTCGCGGCAGGCGAGCGCCAAGTGGATGCAGCCCGCAG
TGCACAATGCCAACCCGGTGCGCGTGGCGGCGCTCATCGCGGCGGTCGGC
CTCGCGGCGCGCGGCTCGCTGGCGAGCGCGTCCGCGGTGATGCCGGCGTT
CGTGCACGTGCTGTCCTTCGGCATGCTGGTGGGGTCCACGCTGTACACGA
CGTTCATCGCAGGCATCATCATGTTCAAGAACCTGCCGCGGCAGACGTTT
GGCAAGCTGCAGAGCAAGCTCTTCCCCGCGTACTTCTGCCTCAACAGCAT
GTGCGCGCTCGCGATGCTCGTCACGCTGCACGGGCTCTCGAGCAGCGGCG
GCGTGCCCGCAGACGCCGCGGTCCCGCTCGCGGCGGCGCTTGTCTGCAAC
CTCGGCAACCTCTTTGTCCTCGAGCCGCGCTCCACGGGCGTCATGCTCGC
GCGCTACGAGCTCGAGAACAGGGGCGAGGCCAAGGGGGCCGAGTATGACC
GCCTCTCGCGCGCGTTCGGCAAGCTGCACGGGATGTCGTCGCTGCTGAAC
CTTGGCGCGCTCGGCGGCGCGTGCGCGTACGCGTGGCACCTCGCGCGCGT
GCGCGATGCGGCGGCTGCGGCAGCGGCGGCGGTAGCAGCGGCGGCGGCGG
CAGCGACGGCGGCAATAGCAGCGGCGGCGGCGGCAGCAGCTGCGGCAGCG
GCTGCAGCAGCGGAGGCGGCAGCGTCAGCGGCAGCGGCGGCGGCTGCAGG
TGTCGCGGAGGCAGTAGCAGCTGCGGCGGCGGCAGCAGCGGCGGCAGCGC
AGCCCATGCCGCAGTCTTTTCTCACCCAGCGGTAACGCGGCGATAGCGCC
CCCGGCAGTGCGTTTTGTGGTGACGACGGCGGCGGCGGCAGCGCCAGCAT
CAGTAGCAGCAGCAGTAGCGCTGCGCCAGCGAGCAGCACCAGCCCAGTGA
CAGCGCTGTGGCAGCACGGAGCTCAACCCCCAACCAGCCCCCCCACACAC
ACACATTCTCTCTTGCTTAGTCCCCC
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protein sequence of jgi.p|Trimin1|348497

>Trimin1|348497|estExt_Genemark1.C_Ctg_250077 ID=Trimin1|348497|estExt_Genemark1.C_Ctg_250077|Name=jgi.p|Trimin1|348497|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=373bp
MKPLAAFALLLVADVPSLAFVVRTPVGESLKQQHIATAFPANRSSTATTV
LASTQNAEDAAAAAPAAPPATAAPPATTAAAAPPSGPKGVAGLSAWDPSS
RQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLS
FGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAM
LVTLHGLSSSGGVPADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELE
NRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLARVRDAAA
AAAAAVAAAAAAATAAIAAAAAAAAAAAAAAAEAAASAAAAAAAGVAEAV
AAAAAAAAAAAQPMPQSFLTQR*
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mRNA from alignment at Contig_25:588189..592512-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6669 ID=mRNA_6669|Name=jgi.p|Trimin1|348497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4324bp|location=Sequence derived from alignment at Contig_25:588189..592512- (Tribonema minus UTEX_B_3156 )
GGGAGGCTGAGGGACCATGAAGCCACTGGCCGCCTTCGCTTTGCTTTTGG
TCGCGGATGTGCCTTCTCTGGCGTTTGTGGTGAGAACTCCTGTTGGGGAA
AGCCTGAAGCAGCAGCATATTGCGGTGAGTGTCTAATCCTGCCAGCGTGC
GGCCAGTAGGAGCTTGCTGGCGCCGGTCTTGCGCAGCGATTCGATCGCTT
TCAGGAGACTGCCAATGTTGGTGCCGGTCTGCGTGAGTATTGGTGCTGTG
CGCGGGCAAGGTGTGCCGAGGTTGTTCCTCCAGGAGCACCGTGCTGTGCC
TCGCACGACACGTGTGGCGCAAACCCTACGCTTCACGACTGCATGCCTCT
TTCGTGACATTCAGTGTAGTCTAGAGCCTGCAGTACAGATTTCCATGCAA
GGCGGTGGTGGTGATGACTCAGACGCGTTTGCTGCCGCGACAGCGGAGAC
GGGAACCCGTGACAGTGGCAGACCCGGCACCAACAACACCCATATTGCTG
CCTGGGTTTTGTGGTATTGGCTGCCGCTGCGCTGTCGTTGTTGATAATTT
TTCGTATTGTGATTGCTGGTGGGAGCCTTTACTTGAAGTATGCAATATGG
TCACCTTGCACAAGGGCCCGTTTCTGTCACATAACGTCCCTGAAAGCGGC
GACTTGAATCACCTGTGTGTAACTTTTATCACATCAATAAGCATAGTGCA
ACAGTATTTTGCACGCGCTGGCTGCGGTAGTGCGCTGTTGTGGCTGGACA
TGTACCTCAGCAGCAAGCTGACATGCAGACCAACTGTCAGTTTGGCCCTG
CTGCTCGCGACAACAGCGTGACCGCATGCAAGGCACGACATTCTGCATGC
TCTCTGGAACATGATGGTACAGATTGGTGTAGGAATGCACTGCCATGTAA
GATTATGCAGCCACTCTGAGTTGCGGCTCCTCTTGAACAGCTGCATACCT
GTTGGCAGCGCCTATGTGCTTCGTGACACGACAATTTTTGGTCATGTCAG
TTTGATTTTCTGAAACATGGGGCGCACCGAATCGCTCTATTACAAGCGCT
AACGTGTCAGCGTCGACACTGCCTCTGACCATTGCATGGCTGCGCTTTAG
GTTGCGCATTGAGCGCTGTGCCTAGGTCAAGTTTGGGCATGCTGCATATT
TACATTGGGCAGTTGGTGCAGAGCCCACCCGCTATGGTGAATCATGAACC
GACGCTGCAGCAGTTGTACAGCCTGTGGCATACCTGTTGGCGCACAAGGT
GTTGGAGCCTTTGGCTCAGCTGTCTACGCCAGTGTGCAATCGGAGGGTGA
CGTCTTGCCGCTGGCATCTGGCGCTGCAGGCCACGTGCTCGGGACTTCGA
ATCAGAGCGTTGATTCTCAAACCCACTTTTTAGCAACTGGGCCGCTTTAG
CGCTCAGCATGCCATGTGCCTGGCCCCGTTGATCTGCCGCAACTGCGCAG
CAATGCTGCCAGCTATTCCTTCCGTTTGGCATGCTCACAGCCGCCTTAAT
ATGGCGGTCGGCTACAGCCTGCGCACCACCCACCTCCGCCCTGACCTTTA
CTCTTGCTTCTCCCCCCCCCCGCGCGCCTGCCCTTGACCATGCAGACGGC
GTTCCCAGCCAACCGCAGCAGCACCGCCACGACCGTCCTCGCGTCGACGC
AGAACGCAGAGGACGCAGCGGCAGCGGCCCCCGCGGCGCCGCCCGCCACC
GCGGCGCCGCCCGCCACCACTGCCGCCGCTGCGCCGCCCTCTGGCCCGAA
GGGTGTGGCGGGGCTGAGTGCGTGGGACCCGAGCTCGCGGCAGGCGAGCG
CCAAGTGGATGCAGCCCGCAGTGCACAATGCCAACCCGGTGAGGGCGCGC
ATGCATGCATCCTGTATGCGTAGGTATGAATGCATATGGCGTAGAGTGCA
TAATCTACACATACCCTTATCACGCTCTTGCGCGGTCTCGTGCCAGTGCT
TTCTTGGTGGCGGCGCGGTCTGCGCGCCAAGTCGCCGCGACGCCGTGCCC
GCCGTCTCGACGATGCGTGCGAGACGTGCCTGTGCGCGCGCTCATCGCTT
GCGCGCCGGTAGCCCCGGCGATGCACGACGGTGCCTCCCATGCTGTTGCC
GACGTACTGTTTGACTCAAGGCCACTTGCTGCAGCAGCAGACACCACAGT
CATGGGTGGAAGGCACTGGCGGCTGACCACACCTGATCACTAGAGCGTCA
CAATCTTATGATTTGTTTCCATACCATGGTGATGCTCATGTCGCTCCCGT
GCCTGCCTGCCTGCGCTACTGTGCTGCGGCAGGTGCGCGTGGCGGCGCTC
ATCGCGGCGGTCGGCCTCGCGGCGCGCGGCTCGCTGGCGAGCGCGTCCGC
GGTGATGCCGGCGTTCGTGCACGTGCTGTCCTTCGGCATGCTGGTGGGGT
CCACGCTGTACACGACGTTCATCGCAGGTGCGTGCGCGCGCGGCGAGCGC
CGCCGCCTGTGCTGCTGCGCGCCGCCGCTGCTGCGCCGCGGCGCTGCTGA
TTGCTCGTCTGCGCGTGCCGCTGCTGCTGCGTGGCGTCGCTGACGCAGCT
GATCGCGCGCCGCTGCTGCTGTCTGTGCCCCTGCGCGCCGCTGCTGCTAC
GCCACGACGCTGCTGCCTGTCGTTTTGCAAACTGCTGCTGCTGCTGCCTG
TGCTTGTGCGCGCCGCTGCTGCTGCGCGGCGACGCGCGCAAAGCCTGCCA
GGCTCTTGCGTGGCTGTGCACGCAGCGGCTGCGTCGCGAGTGCCTGCAGG
CTGATCCGCTTCGTTCGCCGTCTAATGGAGCATGCGTGCGCTGCCGCTCG
CCGTCGTCGCGCGCAGGCATCATCATGTTCAAGAACCTGCCGCGGCAGAC
GTTTGGCAAGCTGCAGGTGAGGCCCCAGCGCTCGTCGCATGCGGCTGATT
CTGTGTCACCGCACGCTCGCTGTTTTCAACTGCGGCGGTGATCAGCAAGG
CGGATCGTCATCCACAGCTGCGAAGCAACGCTCCACCACGCACGTGGATC
GCGCTGCTGTTGTGGTCGGACTCAAGCAAGTTGCATCAGAACGTGCTGTG
CGTGAGCACGCTGGGCGCTCTTGCTGCAGGGCCGCATCGTTGAGCTGTGT
GTGCCGACACTACCATACATTATGCACGCGCTGCCACACACTGAGGCGTG
GCAGGCGGCAGCAGCGCACGCCACGCGCGCATGCGCCGCCGTGTATCTGC
TGCCTTGTCTGCCGATTGGATGTTCTTCTACTGCTTTCTACTGAGTAGCG
GAGCATGTGCTTTGCGCATGCACCCGCACAGCTGTACACCAGTGCTCGGC
TGCTGCACAGTCGCTTCTACAGCTGCGCACACGGATGCCACTCTGACAGC
AGCATGCAGCGGGCACTGCGGCCCTCGCCTTCCGTACAAGTCTTGCGCAT
GTCCTTGGCCAATGTTGCGGGCGGCTTGAGCATCGCTTTCCATCTCGGAG
GTGCATCTCTGTCGCGAGCCGCTCACACGTTGCCCCCCCCCCCTCCCCCC
TCACTTCCCCCCCCGCATCACAGAGCAAGCTCTTCCCCGCGTACTTCTGC
CTCAACAGCATGTGCGCGCTCGCGATGCTCGTCACGCTGCACGGGCTCTC
GAGCAGCGGCGGCGTGCCCGCAGACGCCGCGGTCCCGCTCGCGGCGGCGC
TTGTCTGCAACCTCGGCAACCTCTTTGTCCTCGAGCCGCGCTCCACGGGC
GTCATGCTCGCGCGCTACGAGCTCGAGAACAGGGGCGAGGCCAAGGGGGC
CGAGTATGACCGCCTCTCGCGCGCGTTCGGCAAGCTGCACGGGATGTCGT
CGCTGCTGAACCTTGGCGCGCTCGGCGGCGCGTGCGCGTACGCGTGGCAC
CTCGCGCGGTTCGTCAAGTTGTGAGGGGGCGGGTGCGCGCGGTAGCGTGC
GCGATGCGGCGGCTGCGGCAGCGGCGGCGGTAGCAGCGGCGGCGGCGGCA
GCGACGGCGGCAATAGCAGCGGCGGCGGCGGCAGCAGCTGCGGCAGCGGC
TGCAGCAGCGGAGGCGGCAGCGTCAGCGGCAGCGGCGGCGGCTGCAGGTG
TCGCGGAGGCAGTAGCAGCTGCGGCGGCGGCAGCAGCGGCGGCAGCGCAG
CCCATGCCGCAGTCTTTTCTCACCCAGCGGTAACGCGGCGATAGCGCCCC
CGGCAGTGCGTTTTGTGGTGACGACGGCGGCGGCGGCAGCGCCAGCATCA
GTAGCAGCAGCAGTAGCGCTGCGCCAGCGAGCAGCACCAGCCCAGTGACA
GCGCTGTGGCAGCACGGAGCTCAACCCCCAACCAGCCCCCCCACACACAC
ACATTCTCTCTTGCTTAGTCCCCC
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Coding sequence (CDS) from alignment at Contig_25:588189..592512-

>mRNA_6669 ID=mRNA_6669|Name=jgi.p|Trimin1|348497|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1119bp|location=Sequence derived from alignment at Contig_25:588189..592512- (Tribonema minus UTEX_B_3156 )
ATGAAGCCACTGGCCGCCTTCGCTTTGCTTTTGGTCGCGGATGTGCCTTC
TCTGGCGTTTGTGGTGAGAACTCCTGTTGGGGAAAGCCTGAAGCAGCAGC
ATATTGCGACGGCGTTCCCAGCCAACCGCAGCAGCACCGCCACGACCGTC
CTCGCGTCGACGCAGAACGCAGAGGACGCAGCGGCAGCGGCCCCCGCGGC
GCCGCCCGCCACCGCGGCGCCGCCCGCCACCACTGCCGCCGCTGCGCCGC
CCTCTGGCCCGAAGGGTGTGGCGGGGCTGAGTGCGTGGGACCCGAGCTCG
CGGCAGGCGAGCGCCAAGTGGATGCAGCCCGCAGTGCACAATGCCAACCC
GGTGCGCGTGGCGGCGCTCATCGCGGCGGTCGGCCTCGCGGCGCGCGGCT
CGCTGGCGAGCGCGTCCGCGGTGATGCCGGCGTTCGTGCACGTGCTGTCC
TTCGGCATGCTGGTGGGGTCCACGCTGTACACGACGTTCATCGCAGGCAT
CATCATGTTCAAGAACCTGCCGCGGCAGACGTTTGGCAAGCTGCAGAGCA
AGCTCTTCCCCGCGTACTTCTGCCTCAACAGCATGTGCGCGCTCGCGATG
CTCGTCACGCTGCACGGGCTCTCGAGCAGCGGCGGCGTGCCCGCAGACGC
CGCGGTCCCGCTCGCGGCGGCGCTTGTCTGCAACCTCGGCAACCTCTTTG
TCCTCGAGCCGCGCTCCACGGGCGTCATGCTCGCGCGCTACGAGCTCGAG
AACAGGGGCGAGGCCAAGGGGGCCGAGTATGACCGCCTCTCGCGCGCGTT
CGGCAAGCTGCACGGGATGTCGTCGCTGCTGAACCTTGGCGCGCTCGGCG
GCGCGTGCGCGTACGCGTGGCACCTCGCGCGCGTGCGCGATGCGGCGGCT
GCGGCAGCGGCGGCGGTAGCAGCGGCGGCGGCGGCAGCGACGGCGGCAAT
AGCAGCGGCGGCGGCGGCAGCAGCTGCGGCAGCGGCTGCAGCAGCGGAGG
CGGCAGCGTCAGCGGCAGCGGCGGCGGCTGCAGGTGTCGCGGAGGCAGTA
GCAGCTGCGGCGGCGGCAGCAGCGGCGGCAGCGCAGCCCATGCCGCAGTC
TTTTCTCACCCAGCGGTAA
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