mRNA_6602 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163394
Unique NamemRNA_6602
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: A0A836CHY9_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY9_9STRA)

HSP 1 Score: 553 bits (1424), Expect = 6.030e-199
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGASTPVECMAALRARKDVFRPPPSDASRFPRL 825
            CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGASTPVECMAALRARKDVFRPPPSDASRFPRL
Sbjct:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGASTPVECMAALRARKDVFRPPPSDASRFPRL 275          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: U6LPG6_9EIME (Hydroxyacylglutathione hydrolase, putative n=1 Tax=Eimeria brunetti TaxID=51314 RepID=U6LPG6_9EIME)

HSP 1 Score: 302 bits (773), Expect = 3.040e-98
Identity = 157/269 (58.36%), Postives = 192/269 (71.38%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDM----LKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGA--STPVECMAALRARKDVFR 789
            C EVIPVP L DNYAYL+IDK T+  ACVDPAEP KV+AAA   GVTLS  LCTH+H DH+GGN ++ + VPGL VVGSA E+  P  T+A+ +GET  +G+L+VK +H PCHT GH  + V  R  D +  PVLF+GDTLF+ GCGRFFEGDAQ M    +K++GP      LP ET VYCGHEY+V+NL+FA TIEP N  L++KLEWA+     G+PTIPS+IGEE  YNPFMR + P+V  AVGA     V+ M  LR RK+ FR
Sbjct:  128 CAEVIPVPTLSDNYAYLLIDKKTKTAACVDPAEPEKVIAAAKEHGVTLSMCLCTHRHYDHSGGNEQIKKLVPGLEVVGSAYEET-PGRTKAVTEGETFRIGDLLVKVLHAPCHTIGHVLYYVESRS-DVNAKPVLFTGDTLFLAGCGRFFEGDAQQMHKALMKTIGP------LPDETLVYCGHEYSVANLKFALTIEPQNIALQSKLEWAEKQREAGRPTIPSSIGEEKGYNPFMRVDKPQVQRAVGAPQGDEVQTMHILRDRKNTFR 388          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: U6GPJ8_EIMAC (Hydroxyacylglutathione hydrolase, putative n=1 Tax=Eimeria acervulina TaxID=5801 RepID=U6GPJ8_EIMAC)

HSP 1 Score: 294 bits (752), Expect = 7.020e-96
Identity = 150/268 (55.97%), Postives = 191/268 (71.27%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELG---ELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGA--STPVECMAALRARKDVFR 789
            C EVIPVP L DNYAYL+ID+ T   ACVDPAEP KV+AAA  RGVTL T LCTH+H DH+GGN ++ + VPG+ V+GSA E+  P  T+A+ DG+T  LG   +L VK +H PCHT GH  + +  R  D +  P++F+GDTLF+ GCGRFFEG+AQ M  +L    ++  LP ET VYCGHEYT++NL+FAAT+EP+N  L+ KLEWA+     G+PT+PS+IGEE AYNPFMR + PEV  AVGA     ++ M  LR RK+ FR
Sbjct:   66 CAEVIPVPTLSDNYAYLLIDRKTNTAACVDPAEPEKVVAAAKERGVTLETCLCTHRHFDHSGGNEQIKKLVPGIEVIGSAYEET-PGRTKAVTDGDTFRLGKFSDLQVKVLHAPCHTIGHLLYYLESRT-DVNAKPIIFTGDTLFLAGCGRFFEGNAQQMHHALMK--TIGSLPAETLVYCGHEYTIANLKFAATVEPNNFALQNKLEWAQKQQISGKPTVPSSIGEEKAYNPFMRVDRPEVQKAVGAPEGDEIQTMHILRERKNTFR 329          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: A0A6P6RS00_9EIME (hydroxyacylglutathione hydrolase cytoplasmic n=2 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RS00_9EIME)

HSP 1 Score: 288 bits (738), Expect = 1.340e-94
Identity = 152/265 (57.36%), Postives = 187/265 (70.57%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGA--STPVECMAALRARKDVFR 789
            C EVI VP L DNYAY++IDK T+  ACVDPAEP KV+AAA  R VTL   LCTHKHADH+GGN  + + VP + V  SA ED  P  TRA+ DGE+  +G+L VK +H PCHT GH  + +  R  D +  P++F+GDTLF+ GCGRFFEGDA  M ++L    S+  LP ET VYCGHEY+VSNL FAA+IEP+N  L AKLEWA+   A+G+PTIPS+IGEE AYNPFMR +  E+  AVGA     V+ M  LR RK++FR
Sbjct:   10 CAEVILVPTLSDNYAYVIIDKKTKAAACVDPAEPEKVVAAAKERDVTLRACLCTHKHADHSGGNERIKQLVPDIEVFCSAYEDT-PGRTRAVYDGESFRIGDLHVKVMHAPCHTSGHVLYYMESRT-DMNANPIIFTGDTLFLAGCGRFFEGDATQMHRALMK--SIAALPAETLVYCGHEYSVSNLRFAASIEPNNMALEAKLEWAQKQRAEGRPTIPSSIGEEKAYNPFMRCDRREIQKAVGAPEGDEVQTMHILRERKNMFR 270          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: A0A4D9D9B9_9STRA (Lactamase_B domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9B9_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.190e-91
Identity = 154/274 (56.20%), Postives = 184/274 (67.15%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRD-----GDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAV----GAS--TPVECMAALRARKDVFR 789
            C  VIPVP+L DN+AYLV+D  T   ACVDPAEP KVLAAA   G+ LSTLLCTHKH DHAGGN EM R +PGL VV +  ED +PA T  L D +   LG L V++++TPCHT+GH  FLVT +D     G +  APVLFSGDTLFVGGCGRFFEGD   M+++L   G +  L  ET VYCGHEYT SNL FA ++EP+NA LRAK+      +  GQPT+PST+G EL  NPFMR     V+ A     GA+   PV  M ALR  K+ F+
Sbjct:   26 CARVIPVPILSDNFAYLVVDPQTGKAACVDPAEPAKVLAAAQREGIKLSTLLCTHKHWDHAGGNEEMVRMLPGLEVVTTKFED-IPAATIRLGDDDVYTLGSLSVRAIYTPCHTKGHVLFLVTPQDEADSPGTSPTAPVLFSGDTLFVGGCGRFFEGDGAQMVEALM--GRVASLSPETLVYCGHEYTQSNLAFALSVEPENAALRAKIAVTTAALHSGQPTVPSTVGSELEINPFMRVGEAAVIKAAREKGGAAGEDPVSVMTALREMKNNFK 296          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: U6M2G0_EIMMA (Hydroxyacylglutathione hydrolase, putative (Fragment) n=1 Tax=Eimeria maxima TaxID=5804 RepID=U6M2G0_EIMMA)

HSP 1 Score: 274 bits (700), Expect = 1.500e-89
Identity = 133/224 (59.38%), Postives = 169/224 (75.45%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGE 672
            C EV+PVP L DNYAYL+IDK T+  ACVDPAEP KV+AAA   GVTL T LCTH+H DH+GGN ++ + VPG+ VVGSA E+  P  TRA+ DGET  LG+L+VK +H PCHT GH  + V  R  D +  P++F+GDTLF+ GCGRFFEGDAQ M ++L    ++  LP ET VYCGHEYTV+NL+FAA++EP+N  L++KLEWAK   + G+PT+PS+IGE
Sbjct:    3 CAEVVPVPTLSDNYAYLLIDKKTKTAACVDPAEPEKVVAAAKEHGVTLETCLCTHRHFDHSGGNEKIKKLVPGIEVVGSAYEET-PGRTRAVTDGETFRLGDLLVKVLHAPCHTSGHVLYYVESRS-DMNAKPIIFTGDTLFLAGCGRFFEGDAQQMHRALIK--TIGSLPAETLVYCGHEYTVTNLKFAASVEPNNIALQSKLEWAKKQESAGKPTVPSSIGE 222          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: A0A061D7E1_BABBI (Hydroxyacylglutathione hydrolase, putative n=2 Tax=Babesia TaxID=5864 RepID=A0A061D7E1_BABBI)

HSP 1 Score: 275 bits (703), Expect = 1.330e-88
Identity = 144/262 (54.96%), Postives = 178/262 (67.94%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGASTPVECMAALRARKDVF 786
            C EV+PVPV  DNYAYL+++  T    CVDPAEPR VL AA  R +TL+  LCTHKH DH+GGN E+ R VPG++V GS+ E AVP VT  L DGE + LG L VK V   CHT GH  + V++   D    P++F+GDT+F+ GCGRFFEG A +ML  +     L   P ET +YCGHEYTV NL+FA T++P  AVLR KLEWA+ + A G PT+PST+GEEL YNPFMR++  E+M  VG ST    M  LR+ KD F
Sbjct:   67 CAEVVPVPVFSDNYAYLLVEHGTTNAFCVDPAEPRTVLQAAGERQLTLTAALCTHKHYDHSGGNTEIQRLVPGITVYGSSYE-AVPGVTHGLMDGEVIRLGSLEVKGVRAACHTVGHMMYYVSNPS-DPSTQPIMFTGDTVFIAGCGRFFEGSAANMLDIMN---KLRAYPKETLIYCGHEYTVKNLQFAKTVDPSAAVLR-KLEWAERVRAQGMPTVPSTLGEELEYNPFMRSS--ELMGTVGESTEEGAMRKLRSMKDRF 320          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: A0A0G4FIB7_VITBC (Lactamase_B domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FIB7_VITBC)

HSP 1 Score: 274 bits (701), Expect = 1.820e-88
Identity = 139/272 (51.10%), Postives = 190/272 (69.85%), Query Frame = 1
Query:    1 CCEVIPVPVL---QDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGA-------STPVECMAALRARKDVF 786
            C +VIPVP+L    +NY YL++D+ T+  ACVDP EP+K+L+AAA  G T+ TLLCTHKH DH+GGN EMA  VPG+ V+ +A ED +PAVT+ ++DG+T ++G L +K++HTPCHTRGH  F VT RD +    P+LF+GDTLFV GCGRFFEG+A +M ++L   G +  LP ET++YCGHEYT +N++FA +++P NA L++  +W  D +  G  T+PSTI +EL+ NPFMR + P ++ A  A       S  V  M  LR  KD F
Sbjct:   42 CADVIPVPLLTGTSNNYGYLLVDRETKRAACVDPVEPKKLLSAAADAGATIDTLLCTHKHWDHSGGNKEMASLVPGIEVISTAYED-IPAVTKTMKDGDTHQMGSLTIKALHTPCHTRGHILFYVTKRDSNE--TPILFTGDTLFVCGCGRFFEGEASEMFRALK--GVIGSLPPETKLYCGHEYTRNNVKFALSVDPANASLQSLAQWVDDTLKKGAYTVPSTIQQELSTNPFMRVDQPALIQAARAQDMTADESRDVFVMKRLREMKDSF 308          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: A0A6H5L1C0_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C0_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 2.360e-88
Identity = 138/227 (60.79%), Postives = 168/227 (74.01%), Query Frame = 1
Query:    1 CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELIVKSVHTPCHTRGHAAFLVTH------RDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPST 663
            C EVIPVP+L DNYAYL+ID AT+ TACVDPAEP KV+AAA ARGV +STLLCTHKH DH+GGN  M + +P L VV SA ED VPA+T AL+D E   LG L V+++HTPCHTRGH  F VT        +GD   AP++FSGDTLFVGGCGRFFEGDA  M  +L   G    LP  TRV+CGHEYTVSNL+FA ++EP+N+ +  KL+W++ ++A G  T+PST
Sbjct:  106 CAEVIPVPILSDNYAYLLIDPATKKTACVDPAEPEKVIAAAQARGVEISTLLCTHKHWDHSGGNEAMKQMIPDLEVVSSAYEDGVPAMTLALKDREEYALGSLTVRALHTPCHTRGHVLFFVTSPAAGAGEEGDGAAAPLVFSGDTLFVGGCGRFFEGDASQMSNALQ--GVAASLPGATRVFCGHEYTVSNLQFAKSVEPENSAVLDKLDWSRRVLAKGGYTVPST 330          
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Match: D8RSK7_SELML (Lactamase_B domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RSK7_SELML)

HSP 1 Score: 265 bits (676), Expect = 2.110e-85
Identity = 136/262 (51.91%), Postives = 178/262 (67.94%), Query Frame = 1
Query:    7 EVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLSTLLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVELGELI-VKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFFEGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVLRAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGASTPVECMAALRARKDVFR 789
            EVIPVP L DNYAYL+ID A++  A VDP +P  VL+AA   G  ++ +L THKH DHAGGN E+ + VPG+ V G A +D V   T  L  G  +EL + + +K++HTPCHT+GH ++ VTH+ GD    P +F+GDTLFV GCG+FFEG AQDM  SL     L +LP  TRV+CGHEYT  NL+FA +++P N  L+ K+ W ++   + +PT+PSTI EEL  NPFMR NV E    +G S PVE +A+LRA KD F+
Sbjct:    2 EVIPVPCLDDNYAYLIIDGASKQAAAVDPVKPESVLSAAKKHGAQVTMVLTTHKHWDHAGGNNEIKKLVPGIKVFGGA-KDNVEGCTDPLEHGAELELSKDVKIKALHTPCHTKGHISYFVTHKSGD----PAVFTGDTLFVAGCGKFFEGKAQDMYHSLSE--VLAELPPATRVFCGHEYTAKNLKFAMSVDPHNDALKQKVAWTEEQRRNDKPTVPSTIREELQTNPFMRVNVKEFQVHMGESDPVELLASLRAAKDQFK 256          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163394 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHY9_9STRA6.030e-199100.00Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
U6LPG6_9EIME3.040e-9858.36Hydroxyacylglutathione hydrolase, putative n=1 Tax... [more]
U6GPJ8_EIMAC7.020e-9655.97Hydroxyacylglutathione hydrolase, putative n=1 Tax... [more]
A0A6P6RS00_9EIME1.340e-9457.36hydroxyacylglutathione hydrolase cytoplasmic n=2 T... [more]
A0A4D9D9B9_9STRA1.190e-9156.20Lactamase_B domain-containing protein n=1 Tax=Nann... [more]
U6M2G0_EIMMA1.500e-8959.38Hydroxyacylglutathione hydrolase, putative (Fragme... [more]
A0A061D7E1_BABBI1.330e-8854.96Hydroxyacylglutathione hydrolase, putative n=2 Tax... [more]
A0A0G4FIB7_VITBC1.820e-8851.10Lactamase_B domain-containing protein n=2 Tax=Vitr... [more]
A0A6H5L1C0_9PHAE2.360e-8860.79Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
D8RSK7_SELML2.110e-8551.91Lactamase_B domain-containing protein n=3 Tax=Sela... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:113640..117115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163394|e_gw1.25.106.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00004,RC00137
KEGG ReactionR01736
KEGG Pathwayko00620,map00620
KEGG koko:K01069
EC3.1.2.6
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
DescriptionHydroxyacylglutathione hydrolase
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0491@1|root,KOG0813@2759|Eukaryota,37INA@33090|Viridiplantae,3GDZI@35493|Streptophyta
Evalue3.47e-86
Seed ortholog88036.EFJ25085
Hectar predicted targeting categoryother localisation
TranscriptId163716
TrackFilteredModels1
ProteinId163394
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163394gene_6602Tribonema minus UTEX_B_3156 geneContig_25 113640..117115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163394Trimin1|163394|e_gw1.25.106.1Tribonema minus UTEX_B_3156 polypeptideContig_25 113640..117115 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6602_1exon_6602_1Tribonema minus UTEX_B_3156 exonContig_25 113640..113714 +
exon_6602_2exon_6602_2Tribonema minus UTEX_B_3156 exonContig_25 114531..114757 +
exon_6602_3exon_6602_3Tribonema minus UTEX_B_3156 exonContig_25 115160..115322 +
exon_6602_4exon_6602_4Tribonema minus UTEX_B_3156 exonContig_25 116265..116471 +
exon_6602_5exon_6602_5Tribonema minus UTEX_B_3156 exonContig_25 116960..117115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6602CDS_6602Tribonema minus UTEX_B_3156 CDSContig_25 113640..113714 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6602 ID=mRNA_6602|Name=jgi.p|Trimin1|163394|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_25:113640..117115+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCTGCGAGGTGATCCCCGTGCCGGTGCTGCAGGACAACTACGCCTACCT
GGTCATCGACAAGGCCACGCAGATGACGGCGTGCGTGGACCCCGCGGAGC
CGCGCAAGGTGCTCGCCGCGGCCGCAGCGCGCGGCGTCACGCTGTCCACG
CTGCTGTGCACCCACAAGCACGCGGATCATGCGGGGGGAAACGCGGAGAT
GGCGCGCCGCGTGCCGGGGCTGAGCGTCGTGGGGTCGGCGCTGGAGGACG
CGGTGCCCGCGGTGACGCGCGCGCTGCGCGACGGCGAGACCGTCGAGCTG
GGCGAGCTGATCGTGAAGAGCGTGCACACGCCGTGCCACACGCGCGGGCA
CGCGGCGTTCCTGGTGACGCACCGCGACGGCGACACGCACGGCGCGCCCG
TGCTCTTCAGCGGCGACACGCTGTTCGTCGGGGGCTGCGGGCGCTTCTTC
GAGGGCGACGCGCAGGACATGCTCAAGTCACTCGGCCCGGGCGGCTCGCT
GTGGGACCTGCCCCTGGAGACGCGCGTGTACTGCGGCCACGAGTACACCG
TGTCCAACCTGGAGTTCGCGGCGACGATCGAGCCCGACAACGCCGTGCTG
CGCGCGAAGCTTGAGTGGGCCAAGGACATGGTGGCGGACGGGCAGCCCAC
CATACCGTCGACCATTGGCGAGGAGCTCGCCTACAACCCGTTCATGCGCA
CGAACGTGCCGGAGGTGATGGCCGCGGTCGGCGCGTCCACGCCCGTGGAG
TGCATGGCGGCACTCCGCGCGCGCAAGGACGTCTTCCGCCCGCCGCCGTC
CGACGCCAGCCGCTTTCCGCGCCTCTAG
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protein sequence of jgi.p|Trimin1|163394

>Trimin1|163394|e_gw1.25.106.1 ID=Trimin1|163394|e_gw1.25.106.1|Name=jgi.p|Trimin1|163394|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
CCEVIPVPVLQDNYAYLVIDKATQMTACVDPAEPRKVLAAAAARGVTLST
LLCTHKHADHAGGNAEMARRVPGLSVVGSALEDAVPAVTRALRDGETVEL
GELIVKSVHTPCHTRGHAAFLVTHRDGDTHGAPVLFSGDTLFVGGCGRFF
EGDAQDMLKSLGPGGSLWDLPLETRVYCGHEYTVSNLEFAATIEPDNAVL
RAKLEWAKDMVADGQPTIPSTIGEELAYNPFMRTNVPEVMAAVGASTPVE
CMAALRARKDVFRPPPSDASRFPRL*
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mRNA from alignment at Contig_25:113640..117115+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6602 ID=mRNA_6602|Name=jgi.p|Trimin1|163394|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3476bp|location=Sequence derived from alignment at Contig_25:113640..117115+ (Tribonema minus UTEX_B_3156 )
TGCTGCGAGGTGATCCCCGTGCCGGTGCTGCAGGACAACTACGCCTACCT GGTCATCGACAAGGCCACGCAGATGGTGAGTTGAGGCCTGTCAACATGCA CTCATTCTTGGGTCGATGTGACCATGTATGCTACTTCAAGTGTATACTTC CAGAGTACATGGCATGCATCAAGGCAGCACCCCAGGCGCAATCTGCCAGG GTCTAGTCTCTGCCGGCTGCTCTTGCCTTCCGTCACGTCGAGCACGGCTC CGCAGACACAGCGCGTGCGGAAGCACTGGTGGCTCCAATTGTGACACAGC CCAGGCGAGGCTCCACGCCCCACATTACAGACGCTGAAGTCTCTCGCGGC ATGCCTCCAACCACAGCGCGCTCGCCATCGCACAGAGTCTGACCCCAAGA CTATGACTCACACCCTAAGCACGACGTGCGCAGGCCCCCCCGTGGAGCCG CACAAGGCACTGGGCGCGGCCACGCAGCACGCAGTTAGCGCTTCGGGCTC CGCATCGACTCCTCTCATGGCAGGCATGACTCCGACTCTGACTCTCAGCG CGCGATGCGCCGTCCCCGCAGACGGCGTGCGTGGACGCTTCAGCCTCCGC ATTTCAACCTCCCATGGAAAGATTCAAAAGATCGTAGAGTTCTAGGTAAC AAGGTGTGGTTAGCCGCCAGTGCCTTCCACCAACGACCGCGGTCGCCGCT GCTGCAGCAATTGGCCACGAGTCAAACAGTGCCTCTCATAGGCAGGCGTG AGTCCAACTCTGACTCCCAGCGCGTGACGTCTCCCCCCCTCCCCGCCGAC GGCGTGCGTGGACGCTTCAGACTCCTCTTATGACGTGACTCTGACTCTGA TTCTCAGCGCGTGACTTGCCCCCCCCCCCTCCCCCCTGCAGACGGCGTGC GTGGACCCCGCGGAGCCGCGCAAGGTGCTCGCCGCGGCCGCAGCGCGCGG CGTCACGCTGTCCACGCTGCTGTGCACCCACAAGCACGCGGATCATGCGG GGGGAAACGCGGAGATGGCGCGCCGCGTGCCGGGGCTGAGCGTCGTGGGG TCGGCGCTGGAGGACGCGGTGCCCGCGGTGACGCGCGCGCTGCGCGACGG CGAGACCGTCGAGCTGGGGTGAGTGAGCGCGGCGCGCGCGCGCGCGGACG TCGCCCCGGCGATTCACAACTGTCGTCGACGGACAGTGCATTTGCGCATG CTTTTGAAAGGATTGACGCCCGTGGTCTTTAGGCAGCAACGCTGCCGTGG GCAGCAAGTCACCCTGACCCTGGGGTCTTGAGCCCTTTTCGGGGTTGGTA GACTGCCATTGCTGACCAGCCCCCTCCCCCCCCGCCCCCCCGCCCCACCC GCCCCTCGCGCGCGCGCTGCAGCGAGCTGGTCGCGAAGAGCGTGCACACG CTGACATTGGGGCCCACATAGTGCCCTTCTCGGGGCTAGAGCGTTACAAA GCGCCTATGCTGACCAGTCTCCCCCCCTCCCCCCCCGCCCCCCCCTGCGC CCCCCTCGTGCGCGCCGCAGCGAGCTGATCGTGAAGAGCGTGCACACGCC GTGCCACACGCGCGGGCACGCGGCGTTCCTGGTGACGCACCGCGACGGCG ACACGCACGGCGCGCCCGTGCTCTTCAGCGGCGACACGCTGTTCGTCGGG GGCTGCGGGCGCTTCTTCGAGGGCGACGCGCAGGTGAGGACATGGCAGCA GCGGCGCGCATATGTATAATGAGATTCCATGATTCACAGCATACGATCGG AAGTGTGTAGTCTGTCGGCAGGGCAGGGATGGGCGCACGCGCTTGAGCCG TGCTACGGATACATGAGCGTCAAGTTTGTCGGCGGCTGCGGCGCTCCTTC GAGGGCGACACTCAGGTGAGGATGAGGCAGCCCTCAACCGGCGGCGCGCG TGCACGCGCGCTTGAGCTGTGGTACGGACGAATCAGCGTGTTTGTGGGGG GATGGTGTGACACAGAGGGGGTGGCGGGTGACCGACACCAGGCAAGGCCA CCGACGCTTTGGAAGAAATCAGCTTCGCATACTCGTTCGTTTCAAAATAT GGAGAGCGGTATGTATGGAGTTCGGTGCTCGGCGGGCAGCACCGCGCCGG CGTCCTGTCCAACGCGCAATCGCACTGCCCCGTGCTGAAGCGCTTTTCCT GCTGTACAGAGTGCAGCCGTAGAATTGACGGCCGCTGCCTCGCGTGGCTC ATAGGACGTGCTCACGGTGCCAGATGCGTGCGCGGCGCCACGAGGGGCAG GACATGCGCGTACAGGGGCGTTTCGAGCACATGCGCACGGCCATCACGAC CGCCATGGCACAGGTGTACTCGCACGTGGATCTACAATCATCGCTCACAG TCTGGATCTGCAGATGTACTTACATGCAGCTGAAAATGCATCAACCACTG CTGAGGCCGTGCTCGCCGGGCCCCCCCCCCCCCCCCACCCTCCCCCCCTT CTCACCCCCCTACGACATGCTCAAGTCTGGCGGCGCACGTGTAATGCGGC CACACTCGTATCTCTCAGTTGCGGTGTGCATCTACACACTCAGTCAGTCG CATGAACACCAAACATCAACTGCTGAGACAGCACTCCTCACCACCCCCCT TCCCCCCCCCCCTCCCCCCCCCCAGGACATGCTCAAGTCACTCGGCCCGG GCGGCTCGCTGTGGGACCTGCCCCTGGAGACGCGCGTGTACTGCGGCCAC GAGTACACCGTGTCCAACCTGGAGTTCGCGGCGACGATCGAGCCCGACAA CGCCGTGCTGCGCGCGAAGCTTGAGTGGGCCAAGGACATGGTGGCGGACG GGCAGCCCACCATACCGTCGACCATTGGCGAGGTCAGCGCGGCCCACTTG AAGGCGCTTGTGTTTTCAGTGCTGCTGCTTCTGTGTATAATAGCACCTGC GCTTGTAAATTGTTGGATGATGGTGTACGCTTTCTCGGAGGTATGAGCGT GGACGCAGTTGAATTCAAACTGAGAGAAGTGTGTTGTGGCCTTGAGGCTC GGTGGGTGGCTAATGCCATGGTCCAGTACCGTCTGCCACTGCCTATACCA AGCTCTTCTTCTCATAGCATCTGTCCGCTTTTCTCCTGCTAGCCTTTTCC TGAAAGAGGTGTGATTCGCATTGCCCGATTTGAGTAAAAGCATTGAGGTG TAAAGAAAAGACCCTCGCCGGCGCAAGGACCGCAGCACTGCCTCAAACTG AGCGCCTCTTGGGACTAGTGTGTGTACCCTGCGCACTCTAACGCTGCTAG GCTGTCAACCTCCCGCTCAACCCCCCCGCCCCCCCCCCCCGTGCCCCCCC CTGTCCTCTGCCCAAAACAGGAGCTCGCCTACAACCCGTTCATGCGCACG AACGTGCCGGAGGTGATGGCCGCGGTCGGCGCGTCCACGCCCGTGGAGTG CATGGCGGCACTCCGCGCGCGCAAGGACGTCTTCCGCCCGCCGCCGTCCG ACGCCAGCCGCTTTCCGCGCCTCTAG
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Coding sequence (CDS) from alignment at Contig_25:113640..117115+

>mRNA_6602 ID=mRNA_6602|Name=jgi.p|Trimin1|163394|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_25:113640..117115+ (Tribonema minus UTEX_B_3156 )
TGCTGCGAGGTGATCCCCGTGCCGGTGCTGCAGGACAACTACGCCTACCT
GGTCATCGACAAGGCCACGCAGATGACGGCGTGCGTGGACCCCGCGGAGC
CGCGCAAGGTGCTCGCCGCGGCCGCAGCGCGCGGCGTCACGCTGTCCACG
CTGCTGTGCACCCACAAGCACGCGGATCATGCGGGGGGAAACGCGGAGAT
GGCGCGCCGCGTGCCGGGGCTGAGCGTCGTGGGGTCGGCGCTGGAGGACG
CGGTGCCCGCGGTGACGCGCGCGCTGCGCGACGGCGAGACCGTCGAGCTG
GGCGAGCTGATCGTGAAGAGCGTGCACACGCCGTGCCACACGCGCGGGCA
CGCGGCGTTCCTGGTGACGCACCGCGACGGCGACACGCACGGCGCGCCCG
TGCTCTTCAGCGGCGACACGCTGTTCGTCGGGGGCTGCGGGCGCTTCTTC
GAGGGCGACGCGCAGGACATGCTCAAGTCACTCGGCCCGGGCGGCTCGCT
GTGGGACCTGCCCCTGGAGACGCGCGTGTACTGCGGCCACGAGTACACCG
TGTCCAACCTGGAGTTCGCGGCGACGATCGAGCCCGACAACGCCGTGCTG
CGCGCGAAGCTTGAGTGGGCCAAGGACATGGTGGCGGACGGGCAGCCCAC
CATACCGTCGACCATTGGCGAGGAGCTCGCCTACAACCCGTTCATGCGCA
CGAACGTGCCGGAGGTGATGGCCGCGGTCGGCGCGTCCACGCCCGTGGAG
TGCATGGCGGCACTCCGCGCGCGCAAGGACGTCTTCCGCCCGCCGCCGTC
CGACGCCAGCCGCTTTCCGCGCCTCTAG
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