mRNA_6480 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA) HSP 1 Score: 432 bits (1110), Expect = 6.980e-153 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 Query: 1 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY Sbjct: 1 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 221
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE) HSP 1 Score: 234 bits (596), Expect = 2.110e-74 Identity = 120/222 (54.05%), Postives = 159/222 (71.62%), Query Frame = 1 Query: 1 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM-GIGLRTVYRVMKEEDVLVSY 663 M TAE TA++ L K IGGPL PI+N ILV+V+ K ++ GG+ L EK+ +PTEG VV++GPGK H ETGV + MPC VGDKVLYG+FDGT ++Y G DHQF+RD D+LFVYSG+ M P TIKM+ D++LV+V+ + T SGL L + G+ T G+V+A GPGR+++DG VPM++ GD +KFR FAGSE+S+ G+ YRVMK +VL Y Sbjct: 21 MSTAETETAQYLLDKKAIGGPLTPIANYILVKVRSKDVASQGGIILPEKAQVKPTEGVVVSMGPGKTHPETGVPVDMPCAVGDKVLYGEFDGTAVDYVGTDHQFVRDQDILFVYSGERMEPSTIKMIRDELLVKVDPEATTTKSGLLLGQKEENTGEGSTTGEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVD----YRVMKVNEVLAKY 238
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.000e-52 Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = 1 Query: 22 TAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663 T H+L G+ I GPL P++N +LV+VKD + GG+ L +++ ++PTEG VVA GPG++H ET V +PMP G KVLYGKFDG + YDG H IRD D+L ++G +MT + ++ + D+ILV+V+ +EK++ G+ LA S +PT G+V+ VGPGR + G + ++PGD +KF+DFAG+EI + Y VM DVL + Sbjct: 45 TRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAP--SMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQ---DENYLVMYSVDVLARW 253
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.040e-51 Identity = 87/191 (45.55%), Postives = 130/191 (68.06%), Query Frame = 1 Query: 31 HSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM 603 H+L K I GPL P+SN ILV+++D A+ T GG+ L ++S+D+P+EG VVA GPG+ H T IPM G +V+Y K+ G K++YDG DH I D D+L VY G+ T +KM+ DQ+LV++ E +T +G+ ++A +G K + G+V+AVGPGRT ++G P +QPG+ +KFR++AG EI++ Sbjct: 54 HTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTDTGIVISAQTAGKELK-SEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITL 243
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A7S2KVZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVZ8_9STRA) HSP 1 Score: 171 bits (433), Expect = 7.660e-50 Identity = 89/190 (46.84%), Postives = 127/190 (66.84%), Query Frame = 1 Query: 37 LAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDK-EEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM 603 L G+ I G L+P +N ILV++ + T GG+ L ++ + TEG VV++GPG+ HQE+G+ PMP + G+ VLYGK+DGT+L+YDG H +RDTD++ YSGD MT E + D +LV+V EE+ +SGL +A+ SG KP+ G V+ VGPGR +G + M + GD IKFRDFAG+E+S+ Sbjct: 41 LEGRDIEGALVPCTNFILVKIAEAEDQTEGGIILSGRAKQKKTEGVVVSIGPGRTHQESGITFPMPVSPGEGVLYGKYDGTELDYDGCKHTLVRDTDIMVKYSGDKMTLENCDVTSDSVLVKVNRSGEEEMASGLLIASSASG-NSKPSTGTVVKVGPGRMAQNGEMMDMDVAVGDEIKFRDFAGNEVSI 229
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA) HSP 1 Score: 170 bits (431), Expect = 2.000e-49 Identity = 89/195 (45.64%), Postives = 135/195 (69.23%), Query Frame = 1 Query: 28 EHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDA-MTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGK--KPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM 603 +++L PIGGPL P++N ILV++ D +T GGV L +++ ++P+ G VVA G GK H +TGV +P P GD+VLYGKFDGT ++Y G+DHQ I+D D+L ++GDA MT +K + D +LV+V EE+T+SG+ LAA G+ + + T G V+ G GR ADG +VP+ ++ G+ +KF+D+AG++I + Sbjct: 30 DYTLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETASGIALAA---GVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRL 221
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A1Z5KFF1_FISSO (Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF1_FISSO) HSP 1 Score: 169 bits (429), Expect = 4.110e-49 Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 1 Query: 37 LAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663 L G+ I G ++P++N ILV+ T GG+ L K+ TEGTV AVGPGK HQ++G+ + MP VG+ V+YGKFDGT+++ DG+ H IRD DVL + GD +T E++ ++ D +LV V+ E T G+ LA S K+ + G+V+ VGPG+ ++G + M + PGD+IKFRDFAG+E+ + Y V+K D+L Y Sbjct: 37 LDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKVGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVNVVFDNVLVAVDSSESATEGGILLAKSSSQT-KRASTGEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIE---GKEYSVVKMVDILAKY 241
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC) HSP 1 Score: 169 bits (428), Expect = 5.990e-49 Identity = 87/209 (41.63%), Postives = 134/209 (64.11%), Query Frame = 1 Query: 37 LAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663 L G+ I G L P +N +LV++ T GG+ L + + TEGTV++ GPGK HQE+G+ PMP GD V+YGK+DGT++EYDG H IRD D+L + GD +T +T ++ D +LV+V+D E+T+SGL +AA G KP+ G V+ VGPGR ++G + + + GD++K+RDFAG+E+++ + V++ D+L + Sbjct: 38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETASGLLIAASAK-KGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIE---GDEFSVVRMTDILAKF 242
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA) HSP 1 Score: 166 bits (421), Expect = 5.700e-48 Identity = 81/210 (38.57%), Postives = 140/210 (66.67%), Query Frame = 1 Query: 34 SLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663 +L G+PI L P+SN +LV+++D A T GG+ + E + RP +G VAVGPG+ H ETG +P+ G++V+YG++ GTK++Y+ +DH +R+ +VL Y+GD + +T++ +GD++LVE+ +E++T+SG+ L+ + S + G +L GPGR +++G T+PM ++P D IKFR++ G E+++ T Y V++ D+L + Sbjct: 32 NLDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKEEKQTASGIVLSPEASK--SRVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEVNIE---GTEYMVVRANDILAKW 236
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A7S1UQU6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQU6_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.650e-47 Identity = 89/217 (41.01%), Postives = 134/217 (61.75%), Query Frame = 1 Query: 10 AEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVS 660 A+A +SL G+ I GP P+ N +LV+ KD +T GG+ L +++ +RPTEG V+A GPGK H TG+ I P GD VLYG FDG ++Y+ ++ Q IRD DVL Y G AMT + ++ D +LVE+E+++ +T+SG+ +AA + P G V VG GR T+ G +QPGD++KF+D+AG+E+ + Y ++K D+L + Sbjct: 76 ADALKTTYSLDGEDIRGPATPLGNFVLVKTKDALTATTGGILLPDEAKERPTEGVVIAAGPGKLHPHTGIRIHNPVKAGDSVLYGMFDGAPIKYNDEECQMIRDDDVLLFYEGAAMTLDNVQPCRDYVLVELEEEDLETASGIVIAATVTSE-DIPNQGIVAKVGEGRLTSSGKFSESPVQPGDMVKFKDYAGNEVRID---GKPYSLVKMVDILAT 288 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6480 ID=mRNA_6480|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_62:168173..171472+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGAGACAGCTGAGGCTGCTACTGCGGAGCATTCGCTGGCGGGAAAGCCback to top protein sequence of jgi.p|Trimin1|169101 >Trimin1|169101|e_gw1.62.194.1 ID=Trimin1|169101|e_gw1.62.194.1|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSback to top mRNA from alignment at Contig_62:168173..171472+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6480 ID=mRNA_6480|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3300bp|location=Sequence derived from alignment at Contig_62:168173..171472+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_62:168173..171472+ >mRNA_6480 ID=mRNA_6480|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_62:168173..171472+ (Tribonema minus UTEX_B_3156 )back to top |