mRNA_6480 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169101
Unique NamemRNA_6480
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA)

HSP 1 Score: 432 bits (1110), Expect = 6.980e-153
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
Query:    1 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663
            METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY
Sbjct:    1 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 221          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 2.110e-74
Identity = 120/222 (54.05%), Postives = 159/222 (71.62%), Query Frame = 1
Query:    1 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM-GIGLRTVYRVMKEEDVLVSY 663
            M TAE  TA++ L  K IGGPL PI+N ILV+V+ K  ++ GG+ L EK+  +PTEG VV++GPGK H ETGV + MPC VGDKVLYG+FDGT ++Y G DHQF+RD D+LFVYSG+ M P TIKM+ D++LV+V+ +   T SGL L   +   G+  T G+V+A GPGR+++DG  VPM++  GD +KFR FAGSE+S+ G+     YRVMK  +VL  Y
Sbjct:   21 MSTAETETAQYLLDKKAIGGPLTPIANYILVKVRSKDVASQGGIILPEKAQVKPTEGVVVSMGPGKTHPETGVPVDMPCAVGDKVLYGEFDGTAVDYVGTDHQFVRDQDILFVYSGERMEPSTIKMIRDELLVKVDPEATTTKSGLLLGQKEENTGEGSTTGEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVD----YRVMKVNEVLAKY 238          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.000e-52
Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = 1
Query:   22 TAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663
            T  H+L G+ I GPL P++N +LV+VKD    + GG+ L +++ ++PTEG VVA GPG++H ET V +PMP   G KVLYGKFDG  + YDG  H  IRD D+L  ++G +MT + ++ + D+ILV+V+  +EK++ G+ LA   S    +PT G+V+ VGPGR  + G    + ++PGD +KF+DFAG+EI +       Y VM   DVL  +
Sbjct:   45 TRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAP--SMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQ---DENYLVMYSVDVLARW 253          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.040e-51
Identity = 87/191 (45.55%), Postives = 130/191 (68.06%), Query Frame = 1
Query:   31 HSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM 603
            H+L  K I GPL P+SN ILV+++D A+ T GG+ L ++S+D+P+EG VVA GPG+ H  T   IPM    G +V+Y K+ G K++YDG DH  I D D+L VY G+  T   +KM+ DQ+LV++   E +T +G+ ++A  +G   K + G+V+AVGPGRT ++G   P  +QPG+ +KFR++AG EI++
Sbjct:   54 HTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTDTGIVISAQTAGKELK-SEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITL 243          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A7S2KVZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVZ8_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.660e-50
Identity = 89/190 (46.84%), Postives = 127/190 (66.84%), Query Frame = 1
Query:   37 LAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDK-EEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM 603
            L G+ I G L+P +N ILV++ +    T GG+ L  ++  + TEG VV++GPG+ HQE+G+  PMP + G+ VLYGK+DGT+L+YDG  H  +RDTD++  YSGD MT E   +  D +LV+V    EE+ +SGL +A+  SG   KP+ G V+ VGPGR   +G  + M +  GD IKFRDFAG+E+S+
Sbjct:   41 LEGRDIEGALVPCTNFILVKIAEAEDQTEGGIILSGRAKQKKTEGVVVSIGPGRTHQESGITFPMPVSPGEGVLYGKYDGTELDYDGCKHTLVRDTDIMVKYSGDKMTLENCDVTSDSVLVKVNRSGEEEMASGLLIASSASG-NSKPSTGTVVKVGPGRMAQNGEMMDMDVAVGDEIKFRDFAGNEVSI 229          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.000e-49
Identity = 89/195 (45.64%), Postives = 135/195 (69.23%), Query Frame = 1
Query:   28 EHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDA-MTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGK--KPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM 603
            +++L   PIGGPL P++N ILV++ D   +T GGV L +++ ++P+ G VVA G GK H +TGV +P P   GD+VLYGKFDGT ++Y G+DHQ I+D D+L  ++GDA MT   +K + D +LV+V   EE+T+SG+ LAA   G+ +  + T G V+  G GR  ADG +VP+ ++ G+ +KF+D+AG++I +
Sbjct:   30 DYTLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETASGIALAA---GVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRL 221          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A1Z5KFF1_FISSO (Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF1_FISSO)

HSP 1 Score: 169 bits (429), Expect = 4.110e-49
Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 1
Query:   37 LAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663
            L G+ I G ++P++N ILV+       T GG+ L  K+    TEGTV AVGPGK HQ++G+ + MP  VG+ V+YGKFDGT+++ DG+ H  IRD DVL  + GD +T E++ ++ D +LV V+  E  T  G+ LA   S   K+ + G+V+ VGPG+  ++G  + M + PGD+IKFRDFAG+E+ +       Y V+K  D+L  Y
Sbjct:   37 LDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKVGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVNVVFDNVLVAVDSSESATEGGILLAKSSSQT-KRASTGEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIE---GKEYSVVKMVDILAKY 241          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC)

HSP 1 Score: 169 bits (428), Expect = 5.990e-49
Identity = 87/209 (41.63%), Postives = 134/209 (64.11%), Query Frame = 1
Query:   37 LAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663
            L G+ I G L P +N +LV++      T GG+ L   +  + TEGTV++ GPGK HQE+G+  PMP   GD V+YGK+DGT++EYDG  H  IRD D+L  + GD +T +T  ++ D +LV+V+D  E+T+SGL +AA     G KP+ G V+ VGPGR  ++G  + + +  GD++K+RDFAG+E+++       + V++  D+L  +
Sbjct:   38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETASGLLIAASAK-KGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIE---GDEFSVVRMTDILAKF 242          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.700e-48
Identity = 81/210 (38.57%), Postives = 140/210 (66.67%), Query Frame = 1
Query:   34 SLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVSY 663
            +L G+PI   L P+SN +LV+++D  A T GG+ + E +  RP +G  VAVGPG+ H ETG  +P+    G++V+YG++ GTK++Y+ +DH  +R+ +VL  Y+GD +  +T++ +GD++LVE+  +E++T+SG+ L+ + S    +   G +L  GPGR +++G T+PM ++P D IKFR++ G E+++     T Y V++  D+L  +
Sbjct:   32 NLDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKEEKQTASGIVLSPEASK--SRVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEVNIE---GTEYMVVRANDILAKW 236          
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Match: A0A7S1UQU6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQU6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.650e-47
Identity = 89/217 (41.01%), Postives = 134/217 (61.75%), Query Frame = 1
Query:   10 AEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLVS 660
            A+A    +SL G+ I GP  P+ N +LV+ KD   +T GG+ L +++ +RPTEG V+A GPGK H  TG+ I  P   GD VLYG FDG  ++Y+ ++ Q IRD DVL  Y G AMT + ++   D +LVE+E+++ +T+SG+ +AA  +     P  G V  VG GR T+ G      +QPGD++KF+D+AG+E+ +       Y ++K  D+L +
Sbjct:   76 ADALKTTYSLDGEDIRGPATPLGNFVLVKTKDALTATTGGILLPDEAKERPTEGVVIAAGPGKLHPHTGIRIHNPVKAGDSVLYGMFDGAPIKYNDEECQMIRDDDVLLFYEGAAMTLDNVQPCRDYVLVELEEEDLETASGIVIAATVTSE-DIPNQGIVAKVGEGRLTSSGKFSESPVQPGDMVKFKDYAGNEVRID---GKPYSLVKMVDILAT 288          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169101 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMZ7_9STRA6.980e-153100.00Chaperonin 10-like protein n=1 Tax=Tribonema minus... [more]
A0A6H5K7K5_9PHAE2.110e-7454.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TNB8_9STRA1.000e-5244.3920 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A835YHA6_9STRA1.040e-5145.55Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S2KVZ8_9STRA7.660e-5046.84Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A8J2WID0_9STRA2.000e-4945.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5KFF1_FISSO4.110e-4943.06Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID... [more]
K0T1C8_THAOC5.990e-4941.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7R9UAA2_9STRA5.700e-4838.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UQU6_9STRA2.650e-4741.01Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:168173..171472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169101|e_gw1.62.194.1
BRITEko00000,ko03029,ko03110
KEGG koko:K04078
DescriptionBelongs to the GroES chaperonin family
COG categoryO
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota,2XGQX@2836|Bacillariophyta
Evalue9.82e-50
Seed ortholog159749.K0T1C8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChaperonin Cpn10
Ec32 orthologEc-10_004830.1
TranscriptId169423
TrackFilteredModels1
ProteinId169101
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169101gene_6480Tribonema minus UTEX_B_3156 geneContig_62 168173..171472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6480_1exon_6480_1Tribonema minus UTEX_B_3156 exonContig_62 168173..168330 +
exon_6480_2exon_6480_2Tribonema minus UTEX_B_3156 exonContig_62 169260..169323 +
exon_6480_3exon_6480_3Tribonema minus UTEX_B_3156 exonContig_62 170403..170582 +
exon_6480_4exon_6480_4Tribonema minus UTEX_B_3156 exonContig_62 171209..171472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6480CDS_6480Tribonema minus UTEX_B_3156 CDSContig_62 168173..168330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169101Trimin1|169101|e_gw1.62.194.1Tribonema minus UTEX_B_3156 polypeptideContig_62 168173..171472 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6480 ID=mRNA_6480|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_62:168173..171472+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACAGCTGAGGCTGCTACTGCGGAGCATTCGCTGGCGGGAAAGCC
CATTGGTGGCCCGCTTATGCCCATAAGCAATGCTATATTAGTAAGGGTGA
AGGACAAGGCAGCTTCGACGGTAGGAGGCGTGCAGCTGCTGGAGAAGAGC
GTGGACAGGCCAACGGAGGGGACGGTGGTGGCGGTGGGGCCTGGTAAGAA
GCACCAGGAGACAGGAGTTGAGATCCCCATGCCGTGCAACGTGGGCGACA
AGGTGCTGTACGGCAAGTTTGACGGGACCAAGCTCGAGTACGACGGGAAG
GACCACCAGTTCATCCGCGACACCGACGTCCTCTTTGTGTACTCCGGGGA
CGCGATGACGCCGGAGACGATCAAGATGATGGGCGACCAGATACTGGTCG
AGGTGGAAGACAAGGAGGAGAAGACCTCGAGCGGCCTGTTTCTCGCCGCC
GACGACTCGGGGATCGGCAAGAAGCCCACCATGGGCAAGGTCCTGGCGGT
CGGTCCCGGGCGCACCACCGCGGACGGCAACACGGTGCCGATGACGCTGC
AGCCGGGGGATCTGATCAAGTTCAGGGACTTTGCGGGAAGCGAGATCTCC
ATGGGGATCGGGCTGCGCACGGTCTACAGGGTCATGAAGGAGGAGGACGT
GCTCGTCAGCTATTAG
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protein sequence of jgi.p|Trimin1|169101

>Trimin1|169101|e_gw1.62.194.1 ID=Trimin1|169101|e_gw1.62.194.1|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKS
VDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGK
DHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAA
DDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEIS
MGIGLRTVYRVMKEEDVLVSY*
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mRNA from alignment at Contig_62:168173..171472+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6480 ID=mRNA_6480|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3300bp|location=Sequence derived from alignment at Contig_62:168173..171472+ (Tribonema minus UTEX_B_3156 )
ATGGAGACAGCTGAGGCTGCTACTGCGGAGCATTCGCTGGCGGGAAAGCC CATTGGTGGCCCGCTTATGCCCATAAGCAATGCTATATTAGTAAGGGTGA AGGACAAGGCAGCTTCGACGGTAGGAGGCGTGCAGCTGCTGGAGAAGAGC GTGGACAGGTATGTACTACGTATGCGTGCGTGTTCAGCCAAGCATGCGCT AGCAGCCTCGTGCTGGACGCAGCCTGGTGAGATCCACCGAAGTCGTGTAC TGCATTGTGTGCGAATGTGCTGCAGCTTGTCTGTGGCAGTACTGGTGGTG GTTCCTTGTGCCACATCAGGTGGTTTGCCAATGCTACTCCTCTCGCGCGT GACATCACCACCCATGGCGCGTTGCTGCAGCGTTTGGAGCTGCTTGTAGC GGTTGAGCTTCAAGCGTGGCATAATTTCCCATACAACGAGTGACATCCAG GGCTGTGCAAGGGCAATACCCACACAAAAGTTCCAGAACCATGCGTTCAT ACTTGGCTTGAGAAAAGTTCGCACCTGCAGCCGTGGACTCCTGATCTGTG ACACAAACGCTAGCCTGTATGCCCATTTGACGCAATGCAGCTATTGATGT CTACCAAGCGCATATGTCGCCGCAGCATGCACATCAAGGTCATGTTGAAG TTGCTGTACTGCTGTGCCGTGGGACACCTACGCCCCTGACATGGCAGTGT CTTTTGCAGATATGCAGCCAGGCGCGGTTGAAGTCACGTTCGTCACAATA TTACTGGCGCCATGCGTGAAAAGATCCGTTAGCAGATCTGTCTCAGTGCT TCCAGACACTGGGGCGAAAGTTTCCCATGGCCGTGCAGTGCATGCGAGAG GTAATGGCGTGAGGCAACGAGGGGTGGAGCATATGAGTCCAAGGCGCAGC CTGTCAGCCACACACACGTACAGAAAAGTCGTACTTCGGAAGTACCTAGT ACAGCACCCTGGTGTGCCATGCGCATGCCACACGAAGTACCAGTAGGCCA CCTGAAGCAGGATTGGAATGACCTTGAGGCACAGAGAATTTGACGAGAAG GTGATGAACATCCCGCGACTCCCTTGCGCGTCGGCAGGCCAACGGAGGGG ACGGTGGTGGCGGTGGGGCCTGGTAAGAAGCACCAGGAGACAGGAGTTGA GGTGAGATCTTGAACTTCACTGAGTAGGCACGATTGCTTGAGCTTCCTTG TGCCTTACGCATCAGTCCAAAGCGGAGCTCATGGCATACGAAATTGCTGA ACATTTTTTGCATTCACCATCGGTGGGAGCTATATTCACCTACTTTGAAT GTTGCGTATTGACACCCATGCGAGGCGATCAAAGCGTTCCATACACGTTG TGGCGCGTGCGTCGGTTGCCACAACCGGTCGTCATTTGCGCCTGCATGGT GGTAGATGAGCTGGCTGACGTCAATGTACTTTAGCTTTGTGCTGGCGTTG AAGGGGTAGGTACGCTTATGCCAGTGCTGCGGAGCGCTGACAACGTTGTG GTCATGGCAGTCAGCGGCGAAATGTTGGCGCTCCTCCATCCTCCTTCTAG TGTACGTGTACTGCAGGAAAGAGGATTAATCCATGTACGCCTCCCTGGGA GCATTTGTCGATATACGCCCTTGAACGATAACCAGAATTTGTCACAATGT ACGCCCATGCATGATAACCAGAGTTTAGCAGGTCCATTGCCCGGAATGTT CCGCTCACAGACTAGTCAGTGATACCGCCATGGCCAATCGCCACGCTGGT CCCCGATGTCTTGTAATCGAGAGCGCTGCTCTCGCGGGGTCATCAAACTC ATGTACTTGTACATGCTGTGGAAACCGCCGATGGCTTAGGCCGATGAGGG CCTCGGCTGCGCCAACCGCTTGACTGTCGGCACTCAAGTACCACCGTTCA GCTAACCGCCCGTTGACCGTAAAGCCAAAGAAGTCACCGTGGGTGTCCAT ACATCTGGTGTGTGTCTCCAAGTGCAGCAGATCTCAGTGCTACTACGTTA GCAGTTTAACTGCGAACAAAGCATGGCGGTCATGTGAACGAAATCGCATG CAAACCGGAAGGCTTTGACATGGTGAGGAAGCGCCCTGTCTCACACAAAC ACGTTCGGCCATGTTGCAGCCAATGCTGATGTCCATGGGGTTTGTCTTTA AGTCAACGGTCTTCGCGATGGCTCGCGTGTGTCGCCGCTCTGACACCCTC ATGTCTCATTTACCATTGCACGTTGCGCAGATCCCCATGCCGTGCAACGT GGGCGACAAGGTGCTGTACGGCAAGTTTGACGGGACCAAGCTCGAGTACG ACGGGAAGGACCACCAGTTCATCCGCGACACCGACGTCCTCTTTGTGTAC TCCGGGGACGCGATGACGCCGGAGACGATCAAGATGATGGGCGACCAGAT ACTGGTCGAGGTGAGGCGCGTTGTGTAGTTGAAACCTGTGTACTATGTGG TGTGTGTGTATGTACGTGGCAGTTGGTCGAGGTTCTATGCGCTGTCATTC AAGCATCAAGCATATGTATCCCGTGATGTAAGTATGGACTGTGTGTGTGT ACATGGGTAATTGAAGCGTGCTTGCAGTGCGCAGCTAAAGATATGTGCGC CCCAGTTCAGCCTCTCAGTTGACTGACTGGCGCAGGAGCAACCTCTAAAT GCTGCTGCTGCTGCTGCTGCTGGCAGGCTTGCTGCCCCGTGACGTGCAAC GTGCTCAGCTGCTGATGCAGCTTTCGTGTATGCAGAGCATGGGAGCGTGA CCTGCTTGAACATACTCAAACACGCGTGCATGTTGGAAGCAAGCGCGCAT CGCACGCTCGCTGCGAAGTCGCCTGCGGGTGAGTGCAGCCGTTTAAGACC GCAAAGCCCGCATATGCCAATGGTGACAGCAGACCGCCGACTCAGCTCAA CACCCGCTTGACCACCTACGCTAACCCTAAGCTACCCTAACCCTAACCCT CTGTCGTACACTGTCAAGCCACAGGCAACGCCACAGTGGCTGAGCTCTCC CACTGTCTCTGTCGGCTGCCCTACACGCCGTTTCAGGTGGAAGACAAGGA GGAGAAGACCTCGAGCGGCCTGTTTCTCGCCGCCGACGACTCGGGGATCG GCAAGAAGCCCACCATGGGCAAGGTCCTGGCGGTCGGTCCCGGGCGCACC ACCGCGGACGGCAACACGGTGCCGATGACGCTGCAGCCGGGGGATCTGAT CAAGTTCAGGGACTTTGCGGGAAGCGAGATCTCCATGGGGATCGGGCTGC GCACGGTCTACAGGGTCATGAAGGAGGAGGACGTGCTCGTCAGCTATTAG
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Coding sequence (CDS) from alignment at Contig_62:168173..171472+

>mRNA_6480 ID=mRNA_6480|Name=jgi.p|Trimin1|169101|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_62:168173..171472+ (Tribonema minus UTEX_B_3156 )
ATGGAGACAGCTGAGGCTGCTACTGCGGAGCATTCGCTGGCGGGAAAGCC
CATTGGTGGCCCGCTTATGCCCATAAGCAATGCTATATTAGTAAGGGTGA
AGGACAAGGCAGCTTCGACGGTAGGAGGCGTGCAGCTGCTGGAGAAGAGC
GTGGACAGGCCAACGGAGGGGACGGTGGTGGCGGTGGGGCCTGGTAAGAA
GCACCAGGAGACAGGAGTTGAGATCCCCATGCCGTGCAACGTGGGCGACA
AGGTGCTGTACGGCAAGTTTGACGGGACCAAGCTCGAGTACGACGGGAAG
GACCACCAGTTCATCCGCGACACCGACGTCCTCTTTGTGTACTCCGGGGA
CGCGATGACGCCGGAGACGATCAAGATGATGGGCGACCAGATACTGGTCG
AGGTGGAAGACAAGGAGGAGAAGACCTCGAGCGGCCTGTTTCTCGCCGCC
GACGACTCGGGGATCGGCAAGAAGCCCACCATGGGCAAGGTCCTGGCGGT
CGGTCCCGGGCGCACCACCGCGGACGGCAACACGGTGCCGATGACGCTGC
AGCCGGGGGATCTGATCAAGTTCAGGGACTTTGCGGGAAGCGAGATCTCC
ATGGGGATCGGGCTGCGCACGGTCTACAGGGTCATGAAGGAGGAGGACGT
GCTCGTCAGCTATTAG
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