mRNA_6395 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348303
Unique NamemRNA_6395
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: A0A835Z8E5_9STRA (Yip1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E5_9STRA)

HSP 1 Score: 773 bits (1995), Expect = 9.030e-280
Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 1
Query:    1 MNSSKGEEEKDKDAAVDSRVPSLEAIVVFFDLVHCEMSQHRDAYGLAATGSLSTDTPTLSPPQQPYSTAGTATPPWHGGHVDAAVVNXXXXXXXXXXXXXXXXXXXXXXXVTDSPAPPPHIGGXXXXRMGSPSTPQQAPQQAASVRGSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFSTPSSWNQWIHFRDHMRLPHRISSDDTWRARRGCTALYAGVRDAAVVTLATCAVALGVAAVMSTLFLLRTLTPPVMEHNPTWAMIIVGVLVAEQVTFAMLLKFLFYYQ 1236
            MNSSKGEEEKDKDAAVDSRVPSLEAIVVFFDLVHCEMSQHRDAYGLAATGSLSTDTPTLSPPQQPYSTAGTATPPWHGGHVDAAVVNXXXXXXXXXXXXXXXXXXXXXXXVTDSPAPPPHIGGXXXXRMGSPSTPQQAPQQAASVRGSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFSTPSSWNQWIHFRDHMRLPHRISSDDTWRARRGCTALYAGVRDAAVVTLATCAVALGVAAVMSTLFLLRTLTPPVMEHNPTWAMIIVGVLVAEQVTFAMLLKFLFYYQ
Sbjct:    1 MNSSKGEEEKDKDAAVDSRVPSLEAIVVFFDLVHCEMSQHRDAYGLAATGSLSTDTPTLSPPQQPYSTAGTATPPWHGGHVDAAVVNXXXXXXXXXXXXXXXXXXXXXXXVTDSPAPPPHIGGXXXXRMGSPSTPQQAPQQAASVRGSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFSTPSSWNQWIHFRDHMRLPHRISSDDTWRARRGCTALYAGVRDAAVVTLATCAVALGVAAVMSTLFLLRTLTPPVMEHNPTWAMIIVGVLVAEQVTFAMLLKFLFYYQ 412          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: D7FY12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY12_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.110e-40
Identity = 91/261 (34.87%), Postives = 131/261 (50.19%), Query Frame = 1
Query:  448 CGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFSTPSSWNQWIHFRDHMRLPHRISSDDTWRARRGCTALYAGVRDAAVVTLATCAVALGVAAVMSTLFLLRTLTPPVMEHNPTWAMIIVGVLVAEQVTFAMLLKFLFY 1230
            CGC ++ +Y+ +F VDT DV +RWL S+L  RR+ GF++L+ +NPDAYGPFWN+T+L+FL+A TTNLS                      YD   +V  + IVYGF A  PL VW    Q+D+ + L+ + C +GY    +LPA L+CA+P                     +P+                          +TL    VAL  A  +S +FLLR LTP ++E N   A  ++  L   QV F +++KF F+
Sbjct:   59 CGCLSLAFYQQFFRVDTKDVTERWLHSILSWRRETGFLDLVADNPDAYGPFWNSTSLIFLIAFTTNLSE-------------------GGYDLNTLVVSTWIVYGFAACAPLAVWLVLNQMDLPVPLVKLGCMYGYSLGPYLPAILVCALP---------------------VPY--------------------------MTL----VALSAAGTLSVVFLLRALTPVLLERNVAMASPVMAGLGVLQVIFTLVIKFAFF 249          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: A0A7S0SX75_9STRA (Protein YIPF (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX75_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.020e-39
Identity = 67/161 (41.61%), Postives = 105/161 (65.22%), Query Frame = 1
Query:  445 LCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTN----LSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFS 915
             CGC ++ YY+P+F+VDT D+ KR   ++ +CRR+  F++++ + PDAYGPFW +TTLVF +AVT++    LSSW+A  G  W            YDFQ +++ S+++YGF + VP LVW   +Q D  + LI ++C +GY   +F+PA+L+C  P+ + S
Sbjct:   55 FCGCLSISYYQPFFDVDTTDIIKRLSLAVFYCRRETNFIDIISDKPDAYGPFWISTTLVFTLAVTSHIRGWLSSWMA--GTTWV-----------YDFQSIISASSLIYGFASFVPFLVWIILKQYDGNVKLITMICVYGYSLFMFIPASLLCLFPSEVVS 202          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: W7TJY7_9STRA (Protein YIPF n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJY7_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.400e-38
Identity = 86/264 (32.58%), Postives = 129/264 (48.86%), Query Frame = 1
Query:  439 GSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFSTPSSWNQWIHFRDHMRLPHRISSDDTWRARRGCTALYAGVRDAAVVTLATCAVALGVAAVMSTLFLLRTLTPPVMEHNPTWAMIIVGVLVAEQVTFAMLLKFLFY 1230
            G LC C ++ YY+PYF+VDT  V  R   ++   ++++ F++L+G NPDAYGPFW AT+L+F++AV +N+SS+  F G +   +         YDF  VVTC+  +YGF A++PLL+WAA R + + L LI  +  +GY    F+P  L+  +P   F     W   I                                                AA  S +FLL+ L P VME  P  AM  +  + A Q+  A+ +K +F+
Sbjct:   49 GGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWT--------YDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFP----WLSEI-----------------------------------------------AAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFF 253          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: A0A7S2W6P0_9STRA (Protein YIPF n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6P0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 7.820e-36
Identity = 70/166 (42.17%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  406 QQAPQQAASVRGSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQ-LDVKLSLIHVLCTHGYGQAVFLPAALICAVP 900
            + A Q + +  G +CGCF+V YY+PYF+VDT  V +R L +  F + +  F+ L+ ++PDAYGPFW ATTL+F++AVT NL+S    N    Y           YDF+ V +C ++VYG+ A +P+ +WAAF+  L V+++L+++LC  GY   +F+P AL+  VP
Sbjct:   37 EAADQGSMAKPGGMCGCFSVAYYRPYFDVDTDRVKERLLSTFTFYKPEPTFLTLIKDSPDAYGPFWTATTLIFVIAVTANLTS----NAKTGY----------NYDFELVTSCMSLVYGYLAFLPVTMWAAFKYILGVQVALMNLLCLFGYSLFLFIPFALLALVP 188          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: F0W111_9STRA (Protein YIPF n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W111_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.160e-34
Identity = 63/163 (38.65%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  418 QQAASVRGSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGD--QWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVP 900
            +++A     +CGCFT+ +Y+PYF+VDT DV +R L ++L  ++   F E++G  PDAYGPFW +TTL+F++A  +N + +L + GD  +W            YDF ++ T   +V GF   VP+L W A R   V LSL +++C +GY   +++PA+++C +P
Sbjct:   48 KESAQSVNKICGCFTLAFYQPYFDVDTRDVQQRMLRAILPLKKNPHFTEIIGTCPDAYGPFWLSTTLIFMLASCSNGAGYLDYQGDKGEW-----------TYDFSRLATAYTLVAGFVLGVPILTWGAVRYFGVALSLTYLICLYGYSTTLYIPASILCMLP 199          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: A0A7S2UYF6_9STRA (Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYF6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.110e-34
Identity = 64/154 (41.56%), Postives = 93/154 (60.39%), Query Frame = 1
Query:  448 CGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGM 909
            CGC +V +Y+ Y +VDT DV  R   S+LFC+    F+EL+G+ PDAYGPFW ATTLVF ++V TN+  W     D           I +YD   VV+ ++I+Y +   +PLL + A +QL V +S I +   +GY   V++P AL+C +PN +
Sbjct:  101 CGCLSVRFYQKYVDVDTDDVVNRLKSSVLFCKPPQNFLELLGDRPDAYGPFWVATTLVFFMSVATNIFQWAHHTSDS----------IWEYDMNAVVSIASIIYAWLVFIPLLTYIACQQLGVSISFIQLFSVYGYSLFVYVPLALLCLIPNNL 244          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: K3WPR2_GLOUD (Protein YIPF n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPR2_GLOUD)

HSP 1 Score: 139 bits (349), Expect = 4.850e-34
Identity = 62/157 (39.49%), Postives = 100/157 (63.69%), Query Frame = 1
Query:  436 RGSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGD--QWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVP 900
            RG +CGCFT+ YYKPYF+VDT DV +R   ++L  ++   F E++  +PDAYGPFW +TTLVF +A  +N++S++ F+GD  +W            YDF ++ +   +V  F   +P+L+W   + + V ++L  +LC +GY  A+F+PA+++C  P
Sbjct:   60 RGGMCGCFTLAYYKPYFDVDTADVQQRLTRALLPFKKNPTFAEMIAPSPDAYGPFWLSTTLVFCLASCSNVASYMDFDGDISEW-----------SYDFSRLASAYTLVETFLFGLPVLLWLLGKYMSVPMTLSFLLCLYGYSMAIFIPASIVCMAP 205          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: A0A7S1XRC2_9STRA (Protein YIPF (Fragment) n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRC2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.410e-34
Identity = 72/183 (39.34%), Postives = 103/183 (56.28%), Query Frame = 1
Query:  415 PQQAASVRGSLCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNG-------DQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFSTPSSWNQWI 942
            P Q+A+  G +C C +V+YY+P F+VDT DV  R L S+L   +  GF++++ ++PD YGPFW +TTL+F +AV  NL SW  F         D W           +YDF+ VVTC  +VYG+    P+ +W   R L V++ L  V C +GY    F+PAAL+C VP       + W  W+
Sbjct:   46 PNQSAADPG-ICSCLSVKYYQPLFDVDTKDVVDRMLMSVL-PHKATGFLQMIKDSPDFYGPFWVSTTLLFTIAVVGNLLSWTKFQQLQGSSAEDSW-----------EYDFEMVVTCMCVVYGWAVGAPVALWFTLRYLLVQIKLATVGCAYGYSLVPFVPAALLCGVP-------ADWVSWL 208          
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Match: A0A024FZC4_9STRA (Protein YIPF n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZC4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.850e-33
Identity = 61/154 (39.61%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  445 LCGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGD--QWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVP 900
            +CGCFT+ YY+PYF+VDT DV +R   ++L  ++   F E++G +PDAYGPFW +TTL+F++A  +N + +L F GD  +W            YDF ++ T   +V  F   VP+L W A R     LSL +++C +GY   +++PA+ +C +P
Sbjct:   57 ICGCFTLAYYQPYFDVDTSDVQQRISRAILPLKKNPHFTEIIGTSPDAYGPFWLSTTLIFMLASCSNGAGYLDFQGDKDEW-----------TYDFSRLATAYTLVVSFVLGVPVLTWGAVRYFGATLSLTYLVCLYGYSTTLYIPASFLCMLP 199          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8E5_9STRA9.030e-280100.00Yip1 domain-containing protein n=1 Tax=Tribonema m... [more]
D7FY12_ECTSI3.110e-4034.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0SX75_9STRA1.020e-3941.61Protein YIPF (Fragment) n=1 Tax=Chromulina nebulos... [more]
W7TJY7_9STRA1.400e-3832.58Protein YIPF n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S2W6P0_9STRA7.820e-3642.17Protein YIPF n=1 Tax=Rhizochromulina marina TaxID=... [more]
F0W111_9STRA2.160e-3438.65Protein YIPF n=1 Tax=Albugo laibachii Nc14 TaxID=8... [more]
A0A7S2UYF6_9STRA3.110e-3441.56Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
K3WPR2_GLOUD4.850e-3439.49Protein YIPF n=1 Tax=Globisporangium ultimum (stra... [more]
A0A7S1XRC2_9STRA6.410e-3439.34Protein YIPF (Fragment) n=3 Tax=Phaeomonas parva T... [more]
A0A024FZC4_9STRA7.850e-3339.61Protein YIPF n=1 Tax=Albugo candida TaxID=65357 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:714154..726040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348303|estExt_Genemark1.C_Ctg_220083
CAZyGT35
BRITEko00000,ko00001,ko01000,ko03400
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
KEGG koko:K00688,ko:K03155
EC2.4.1.1
GOsGO:0000138,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005802,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708,GO:0098791
Preferred nameYIPF1
DescriptionRab GTPase binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3114@1|root,KOG3114@2759|Eukaryota
Evalue3.46e-40
Seed ortholog2880.D7FY12
Hectar predicted targeting categoryother localisation
TranscriptId348625
TrackFilteredModels1
ProteinId348303
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348303gene_6395Tribonema minus UTEX_B_3156 geneContig_22 714154..726040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348303Trimin1|348303|estExt_Genemark1.C_Ctg_220083Tribonema minus UTEX_B_3156 polypeptideContig_22 714154..725763 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6395_1exon_6395_1Tribonema minus UTEX_B_3156 exonContig_22 714154..714189 +
exon_6395_2exon_6395_2Tribonema minus UTEX_B_3156 exonContig_22 714308..714384 +
exon_6395_3exon_6395_3Tribonema minus UTEX_B_3156 exonContig_22 718958..718998 +
exon_6395_4exon_6395_4Tribonema minus UTEX_B_3156 exonContig_22 719078..719151 +
exon_6395_5exon_6395_5Tribonema minus UTEX_B_3156 exonContig_22 719288..719315 +
exon_6395_6exon_6395_6Tribonema minus UTEX_B_3156 exonContig_22 719418..719629 +
exon_6395_7exon_6395_7Tribonema minus UTEX_B_3156 exonContig_22 720611..720733 +
exon_6395_8exon_6395_8Tribonema minus UTEX_B_3156 exonContig_22 721862..721983 +
exon_6395_9exon_6395_9Tribonema minus UTEX_B_3156 exonContig_22 722801..722938 +
exon_6395_10exon_6395_10Tribonema minus UTEX_B_3156 exonContig_22 723633..723699 +
exon_6395_11exon_6395_11Tribonema minus UTEX_B_3156 exonContig_22 724367..724441 +
exon_6395_12exon_6395_12Tribonema minus UTEX_B_3156 exonContig_22 724517..724573 +
exon_6395_13exon_6395_13Tribonema minus UTEX_B_3156 exonContig_22 724838..724858 +
exon_6395_14exon_6395_14Tribonema minus UTEX_B_3156 exonContig_22 724951..725031 +
exon_6395_15exon_6395_15Tribonema minus UTEX_B_3156 exonContig_22 725677..726040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6395CDS_6395Tribonema minus UTEX_B_3156 CDSContig_22 714154..714189 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6395UTR3_6395Tribonema minus UTEX_B_3156 three_prime_UTRContig_22 725764..726040 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6395 ID=mRNA_6395|Name=jgi.p|Trimin1|348303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1516bp|location=Sequence derived from alignment at Contig_22:714154..726040+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGCAGCAAGGGCGAGGAGGAGAAGGACAAGGATGCCGCGGTCGA
CTCTAGGGTACCGTCCCTGGAGGCGATCGTGGTGTTCTTCGACCTCGTGC
ACTGCGAGATGAGTCAGCACCGGGACGCGTACGGGCTCGCGGCCACTGGC
AGCCTCAGCACCGACACGCCCACACTATCGCCGCCGCAGCAGCCGTACAG
CACGGCGGGCACGGCGACGCCGCCTTGGCACGGCGGGCACGTCGACGCCG
CCGTGGTCAACACCGGCACTCCAACAGGATCGCCGCCGCGGCAGCCGTAC
AGCACTGCGGGCACGTCGACGCCGCCGTGGGTGACGGACTCGCCGGCGCC
GCCGCCGCACATAGGGGGCGGCGGCGGGGGGCGCATGGGCAGCCCCAGCA
CGCCTCAGCAGGCGCCGCAGCAGGCCGCGAGCGTGCGGGGGTCGCTGTGC
GGGTGCTTCACGGTCGAGTACTACAAGCCGTACTTCAACGTGGATACGGG
CGATGTCTACAAGCGCTGGCTCGGCAGCATGCTGTTCTGCCGGCGGCAGA
ATGGCTTCGTGGAGCTCATGGGGGAGAACCCGGATGCATATGGTCCCTTC
TGGAACGCAACGACCCTGGTGTTTCTGGTCGCCGTCACGACGAACCTCAG
CAGCTGGCTGGCCTTCAACGGCGACCAGTGGTATGTATTCGTGCGCAATC
GCTACCGCATACCGCAGTACGACTTCCAGAAAGTGGTGACGTGCTCCGCC
ATCGTATACGGGTTCGGCGCGGTAGTGCCGCTGCTTGTGTGGGCCGCGTT
CCGGCAGCTGGACGTCAAGCTGTCGCTCATCCACGTGCTCTGCACGCACG
GGTACGGGCAGGCGGTCTTCTTGCCAGCAGCGCTCATCTGTGCGGTGCCC
AACGGGATGTTCTCAACGCCCAGCAGCTGGAACCAGTGGATCCACTTCAG
GGACCACATGCGCCTCCCTCACCGCATCAGTAGCGACGATACGTGGCGCG
CAAGGCGCGGGTGCACAGCGCTCTACGCCGGCGTGCGCGACGCTGCGGTC
GTCACGCTGGCGACCTGCGCGGTGGCTTTGGGGGTGGCCGCCGTCATGTC
AACACTGTTCCTGCTGAGGACCCTGACGCCACCGGTCATGGAGCACAATC
CGACATGGGCGATGATCATAGTGGGTGTCCTCGTGGCAGAGCAGGTCACG
TTTGCCATGCTGCTCAAGTTCCTCTTCTACTACCAATGAGGGCAACGCGC
GCAGCAGCCCCACTGAAGAGCCGGTGGCCGAGCACTGTCTTCCACCATCT
TCAATGGAAAGTTGAAGTTTGGCTGCCCACTGGCTCTGTAGGCTACACCT
GCTCGTGCACCACTGCCAGATGGACTGTGCTTTCGCTGCGCATGCTGCAG
CTGTGTGGCACGGAAAATCTCACTGAGAGGGCCTTGGGACACAGTTGGGC
GTTGGGGGGATGGGGCTGCTAGAGCATTGTCATTTCCCATCAATTACTAC
AACACACTGATACGCC
back to top

protein sequence of jgi.p|Trimin1|348303

>Trimin1|348303|estExt_Genemark1.C_Ctg_220083 ID=Trimin1|348303|estExt_Genemark1.C_Ctg_220083|Name=jgi.p|Trimin1|348303|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=413bp
MNSSKGEEEKDKDAAVDSRVPSLEAIVVFFDLVHCEMSQHRDAYGLAATG
SLSTDTPTLSPPQQPYSTAGTATPPWHGGHVDAAVVNTGTPTGSPPRQPY
STAGTSTPPWVTDSPAPPPHIGGGGGGRMGSPSTPQQAPQQAASVRGSLC
GCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPF
WNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSA
IVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVP
NGMFSTPSSWNQWIHFRDHMRLPHRISSDDTWRARRGCTALYAGVRDAAV
VTLATCAVALGVAAVMSTLFLLRTLTPPVMEHNPTWAMIIVGVLVAEQVT
FAMLLKFLFYYQ*
back to top

mRNA from alignment at Contig_22:714154..726040+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6395 ID=mRNA_6395|Name=jgi.p|Trimin1|348303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=11887bp|location=Sequence derived from alignment at Contig_22:714154..726040+ (Tribonema minus UTEX_B_3156 )
ATGAACAGCAGCAAGGGCGAGGAGGAGAAGGACAAGGTGAGTGGAAACTT TACTGGAAACTGGCACGTGCAGCTCCTTCGAGTGCGTAGTACATTCACGC GCGTGTAGCAAGGTGTAGCAAAGAGCACAGAGGGCACTTCGAAAAGAACG GCAGGATGCCGCGGTCGACTCTAGGGTACCGTCCCTGGAGGCGATCGTGG TGTTCTTCGACCTCGTGCACTGCGAGATGAGGTCTGTGATTGCACACGGC GCTGCAATCATCAGCTTCCCATGTCTGATGCGCTGCAGCAATACTACCTG TCAACGGCACATCACTGAGGCGTTGGCACCAGAAGCAGCCTGCTCTGCGG AAATGCCTTCGTGTCCTCTCTTTGGGCGGCGGCAAGCCCAGGGCGCCCTC CTAATGTTTGGCTCGTGGTGCTCTCTGTGCTCTTTGAAAGTAGTGCGTTG GCGGATGAAGAGCCCAGAGGCCCCATGGCACCCACAACACAATTGCTCGA CTGTAGACAGTTCGCTCATCTCAGCTACACCTATCTCAATAATAGGGTTC CTTGGCCTGGGCTTGTAGCAAGTGTTAGGCGTAGCTGCAGTGTAGCTGAA GGCTGGAGAGGCATCGGACATAGGCCAGGCTAATCAGCCTGGTTTGAGAT CCACTGCAGTGGGGAGGGGATACGGGTGTCTGTCCTGGTGCGGCCCCCCC TTTGCTGCTGCTCTCGCAGATGGCTCTGTGTCAACCGCGTGGTTGCCTCC AGACAGTTCCCTGTCACTGACGGCGGTTGGCGATGTGCATGCAATACTGA ATCGCGGGAGGGTAGCACATGTTGTTTTCCCTCCTCTGGGGGTATGGGGG TATTCCGCTGCCTCCGTGCTTCCCGGGCCGTCCCTATGTCCGATGCACGC CTCCAAGTCCTTCAGTATATATTGTCCTCGAACGCTGAAAGCTTGCACAC AGAAGTCTTTTTGACTGGTGGATACGGTGATACTGTTTGACTCGTGGCCA ATTGCTGCAGCAGCGGCGACCACGGTTTTTTGGTGGAAGGCACTTGCGGC TAACCATCCCTTGTCACCTAGAGCTCTACGATCTTTTGATTCGTTTTCAT TGTTAGAATTGCATGAAAAGGGAGCAGTAAATGTACCAGTAGTTGTGGTA GTGGTAGGTCCCTCGCTATGGTCTCCACCTTGAAGCGGTGCGGGGGCTTG GTGGTGAGCCTTGGGCAAGCTCGCTGCTGTACTAAGAGAGACCCAGGCAG GTGATGGCATGGCCCTTGCATGTGCCGGTGCTGAGCACTGTTGTTGACGC CAAGTTGAAGCTGTGGAGCAGCCCGGCGCCTCCTGAGTGCGGCAACCTAC GATACCCGCGCCCGAATGGACATCCTTCTAGGTGAGTCGACAGGCATGGG TAGGTATTGTTACGGATGCCGTGTACATGTTGACACAAGTGCGCATGGCA GATTCGCATGTGCACATGCAAGATTCACCAGTCCTTCAGTTGAAGTGACC CCGTGCTGCGATCATCATTCCCGAACACGTAGCACAGAGCAGCTAACTGC AGCATCTAGTGCTGATCGCATTGCGGTGGTTGTGACTGGATGCTTTCCAT TGCAACTTCATGCCAGTTTCCACATTTCACATTGCGGCGTATCACCGCCA ATCGATGCATACTGATCATGCGCCGATGGCTGATTTGTCCCTTGCACAGA CATCGGAGCACTGCAAGCACATCATAGCAAGACTTATTGGCACTAACTAC CCGCCAAGCAGAACATCCAAGCAGAACATTCTTCACCTGCGCGAATTCCC CGCAAGGTCAGCACTGCTTGCGGGTCCATGTACTGAAGCAGAGCACTCAC TGGCCGTCACACGATGTGCTGTTTGCAGTGAGCGCAGTGCCTCTTCTTTG TGTGAGGTTGAAACACCGTACCTTCTTGCTCTCGCATGCAAGTAGCCATG TCGTGGTATACTTGTATCGTCTGCATCACATTAGTCCGCGTTCATCTGTC AATGGTCATTTGTGTAAGCTGGTCGTCATCGTTTAGACCTGGATGTACTG TACTGGCTACAGTACACATACAGTACACAAAGAGTGCGTGCAGAGGTTGC GGTCGCCACGCTGTACTCTGACAGTCAGTCCACTGTCTGCTACATTGCTT GTCACGTGATCTGCAGGTGGCAATGCTCAAGACAACGTGAGCACTGGCGC GCACGTGACACAAGTGACCTGATCAACACAAGCAGTGGCACAGTGTTGCG TGCTACCTTCGAAGAAGCCTTCTCACACGCTAGATGGTTGGAGCAGGGCA TTGGGAAGGAGATATGGCTTACATGAGAAGGTTGATGTTTGGCACAAGGG CGTACACTTTACGCTGTCCTGTTCCAGCAGACTAATAGCCGCATGCTGCG CTCTATTGAAGCTTACAATGATTATGACTGTTTGTACTTCAGTGCCTTCT TTTTTAAAAGAGTCTTGTTTGAGTGTTACCCATGCTTGCCAGTGCCTTAC CTCTGCTATAGTGCTGCTGCAGCACCAAGTTGGGACAAGCTGTTGTGATG CTATCCTTTCTGTTGATGCAAGTCTCATGCACTACTGAATTACCAAGGTG TTGCATGTGAGGCGCTCAAAACGCTTGCTCGCCTATACCATCGGCCATGA GAAATATGCATGCACGCAGTGCAGAGGGAGAAGATGTATTGCTGCTGCAG GCACGCAGTGCAGGTGCCAAAGCCACAGCAAAGCACAGTCTATTGAACAA TCCTGGAGAAACTGAGGTATAAGTGACCAAATGTGATGGCCACGACCTGT GGAATAGCCCCAAGCACACATGTCATGACATGCCAAACAGGCAATGCCTG CTGAACCAGATGCTGTATCATGCAAGCAGGCAATGCCTGCTGAAACAGAT GCTGTATCATGTGAAGGAACGCAAAAGAACCTTTCACTAGAGAGCATTCC GCAAGTGCTACAGTACGACTGTATCATCAAGAGCTCTGTACTTTTTATTA ATTCTCGCTCAGGGCGCGAAAAAGCCCAGATGATTGGCATCTACATTGTT GCTCTGCCAGAGGAATACCGCAGCTGTTCGTGCAGCAGAACACGGCTGAA CAGCGACAACGCAGAGAGGTAGCAGCTTTGTGGTCTCAAAACTCATATCA GAGTGCAGCACAGCTCACACATGTCAACACAAGCCAACTTTCGCCTGCAC AACTTGACGTCGCGCCTGACGCAATGCAGCGTGCGTCCTTGCAGTCTTGG ACCTGTGAAATGGAATTGCGTCATGAGATAGAATTACTAGAGACCAGCGC CTGCTGTATGGCTCTGGAGAACTGGTCAAGCATGTATGTATTCCCCGAAC GTTAACATGACATTCATACGATCGCACATGAGATCCCCCTAATAAGGACC CTCAAGGGGGGCGTCGACCGAAACAGTTTCGACGAGCATTTGCAAGTGAC ACGGCTGGTACTAGCTAGGGCGACTGGAACGGAGCAGCAGTGAAGGGCGC TGGGGGAGGCGGCGTTTTCTTGAGCAGCAACCATGATGGAAATGGGGCCT ATGCCAGGTAACACCCTTGCTGAGAAAACTAGGGACTCCAGCCCGAATCG CTTCCTTGTGTGTAGGCGAGTGTGCTGATATGAATTGATTAAAACCAGGC AGCTTCTGAGAAGTTTGGCGCTGTGTGAAGTATTGGTGCTGCCAGCGAAG CAGGACCAGATCATGAATTGTCAGAAACGCAGCTGCTTCGGCGACTCTTC TGTCAAAGCCGTCAAAGCTGTTTTTACTGCAGGCGCACGCCGAAAGGCAG TGCAGTGGTCGTTGAAGCACCAACAAAAAAATACTGAGAAGGTAACACCA AGGCGATGTAGATCAAGGCACTCAGCTTTGAGAAACACGGCTGATGGTCA TGATGGTCAAGATGACCTACAACCTTCACTCTGTTGCCCCTGTTTCGGGC AGAGGCGATTGCTGTCTTTTTCTGCTAGCCTTTTCCACCGGAACGGCAAA ACAGCGTTGTTGCAGTGTGGTTTTTCGCATCAATCTGACTGTAAACTATG AGCGCGCTGCCACAAGTGTTGAAGTTGCACAGGCAGGTGGGGAGAACGCA GCAGTGACCGGCAGTAGTAATTGGACGGTAGGAAACTGACCAAACTCAAG AGGAACCAATAGCGATGACCACTCTCGCCCACCATGCAGCAACAGCGGCA TCATCACTTGTGCTTGTGCCATGCCATCAAGCCCATTTGAGAGACTCATC CTTTATACAGCGTGGCATACACAAACCTTCTCAAGTCTACAGTCAACCAG CACTTCAAGTGACAGACAGGCAAGCCACCAGTAAACACACTCACCGCACA CCAACTAGGCGAGTACTCAGCGCCGGTGACTGCATCAGGTCGGCAACACA GGTAGTTCACTTGGCAGTGACCTTCTGCACAGTGCCACTAGGCCACTTTA GCGCACACACGCGTGACCATGCGGTCCGACAGAGCGCGCAGCGCCAGCAC CAGCGCCAAAATGTCTAGTCGACCTTGTCAGGATGCCAGGTTGCCCACGC AACGGAACGTGCCTTCGAGCCATTTTTGAATCGTTGCGCACATTCGGAGC GGCGCTGTCGCCCGCACGTCGTCCCCCACAACTTCAACATGTGATCCAAA AGGCAAGACAGAAACCCTGAGCTGTCACCTCGCGAAATTCGTGGATGACA CAAGGCCAATGGATTTGGCGGCAGTCGTACAGCACGGTGGGCACGTCGAC GCCCGCCAACTTCAAATTTTTTGACTTCAACTCTGATGCTCGCTACTGCC GCAGTCAGCACCGGGACGCGTACGGGCTCGCGGCCACTGGCAGCCGTGCA GCACAGCGAGCACGTCGATGCCCCTCAACTTCAAACATTGAAAACTTCAA CTCTGATGCTCGCTGCCACCGCAGTCAGCACCGACACGCCCACACTATCG CCGCCGCAGCAGCCGTACAGCACGGCGGGCACGGCGACGCCGCCTTGGGT GACGAAGTCGCCGTCGCTGCTCACCTTCAACTCTAAAAGAACTTCAACTC TCAAGCAACTTCAATTTTCATGCTCGCCGTCGCCGCAGTCAACACCGGCA CGCCAACAGGATCGCCGCCGCTGCAGCCATATAGCACGGCGGGCACGTCG ACGCCGCCGTGGGTGACGGACTCGCCGGCGCCGCTCACCTTCATCTCTGA AACAACTTCAACTCTGAAACAACTTCAACTCTGAAACATAATTTGCTGCT CGCTGCCGCCGCAGTCAACACCGGCACTCCAACAGGATCGCCGCCGCGGC AGCCGTACAGCACTGCGGGCACGTCGACGCCGCCGTGGGTGACGGACTCG CCGGCGCCGCCGCCGCACATAGGGGGCGGCGGCGGGGGGCGCATGGGCAG CCCCAGCACGCCTCAGCAGGCGCCGCAGCAGGCCGCGAGCGTGCGGGGGT CGCTGTGCGGGTGCTTCACGGTCGAGGTGCGGTGCGGTAGCATTTGCCCT GTGCAGTGGTGTGTGTGCAGTGCTTGTGTAGCGCTGTCGAGCAATGGAGC AAGCCTGGAGTGTCCGCTCGTGGGGAAGTGCCGTGCAAGGCAGCTCTGTA AACTGGAGGCGACGTGCCGCGGAAGAGGTGCGTTGTCCCACGCAGTGCGG ACGGTGCCAGCACTGTTGAGCGATGGCGCGCTGCATTCAGCGTGAGGGCG GCGGTGTGCGGGTGCGTCATCGTTGAAGAGCGTTCGCCTTGCTGTTGAGG TGCGTTTGCCTTACACTGCGGTGTGTGCGTTGAAGCCATCTTGATGGCGG AGTTTGCGTCCTGCGACTGCCCGCTGCTGAGCGCTGACTGACGCTTTTGC GCGTGGGAAGCGCCGTGCATGCGGCTCTTTGAACTTGGAGATAACGCGCC GCGGATAGGCACTGCGGCCGATGGCGCAGGGCGCTTCCCAAACCTCTCAA AGGCGGAGATGTCTCCGAACTCCGCTGACGGCCGCGGCATCAGTGGTGAG CGGTCGGCGTCCGCGCTGAATCGAGTGCGCGCGCGGTCGCTTTGCGCGCC GGGTGCATTCACGGCACGCGCTCCCCTGCATTGCGCACGCGGCATCCGCG CACGTCAAGTCAAGCTTGCATGGACGTGGCCGCGGCACCTGCGGGCATGT ATGTATGTATGTATGGGCGTTGCCGTTCCACTGCTATAATATGCGCCGTT CGTGCGCGCCGAGGGGCATCGGGCCGCCGCTGCAGCCATCGCCTGTGCTG GGCACTGCTATGCGTGTTGATGTTTGCCTGCGTGCTGTGCTGGGCACTTA ATCACGTGCTGGGCAACGGTACGACTATGGCCATTTGCTTGCGTGCTTTG CTGGGCGCTGATCTGTAGAACTATGTTGACAGGCTGATGAATCTCTCTCT TACAACGCTGCTGTGTGTACAATGTGTTTTTGGTTTCTGTGTTGATGGTC CCTGCAGTACTACAAGCCGTACTTCAACGTGGATACGGGCGATGTCTACA AGCGCTGGCTCGGCAGCATGCTGTTCTGCCGGCGGCAGAATGGCTTCGTG GAGCTCATGGGGGAGAACCCGGATGCATATGTGAGTACTCTTTTTCATGA GGGTCAGGATTAGGCTTAGGTGTTAAGATTAGGGTTGTCGTTTAGGGGGT CGTGAAGTCCAGACGATAGACAGAATACATAATGTGCTACACAAGGTGTC CCATGGTGACACAGGGCCATACGGCGCCTCCCCCTCGGTGTGTGCCTACA AGCGGTATGGCACATTCAGAGTCTTGCACTGGCTCCGCTTTGGCAGTTCA TAATGAAGAACATCAGCAACAACTTCTGTCGGAAATTGCGGTGCAATACT GCGCTGCGATGCGTGCTCTCAAAAATTACGGTGACAGGAGCCACTGTAAC TTCATCAATTCAATTATGCAGCAGTGCTCAGGTTGCTGCTGACGGCAAAA TTGGCCCTCTGGCGCGAAGATATCATTGTGCGTCGCGTCTGCTCATATAC TCTCTGTGTATATGTGCATCGGTGCAGTGACCGCCTTCATTCATGCGGAA ACTCGGCTGTAACTCTAACCCTAACCCTTTCAGATCTGTTCATGACAAGC ACGACGCGCCCACCTCGCTGCCTCGGTGTCCTCAAGCGGCTTTGGAGTTC AAGTTTGAAGTACGCAACGCAACGCAGCGCTCAGCGCGCGTGCTTAGCCA GCTCTGATCTGAAATTGTGTAACTGATGGCTGACTGCTCAGCCTTTGTGT TTGACGCACGAGGTGGCGTCAGATGCAACCGTCACATGAACTTCTGCAAA GGCGGCTCGCAAAGTGTCCTCTGCGTCTCCCTCTGCAACTGCTCATAAAA TCGTCAACGCTTATTCGTTGCATGTGGCTCCACACAATCAGTTGCTAGTT GAAGTTCTGACACAAGAAGCGCGGTTTTCGCAGGGTACCCGCCTCTCCCT TGCCAACTGCCGTTCACCAATCCCCCTCTGCATCTGTGAAGCTTCGACAA CGCTCATCTTTCTTGCAAGCATGTCTGCCTCTGCCTCTCCAGGCGCGGAC GCTTGTGCTGACTGGCATGTCAGGGTGACATCGTGCCCATTGTCCCGGCT GCTCAGTATGCCAGCTGCAGCTTCTTCTAGCGCACAAAGCCCTCACAGCG CTCATTTTCGCGCCTCGCTCACATGCTGTTGATGCCTGTGTGCTGACTGG TGTGCCAGGGTCCCTTCTGGAACGCAACGACCCTGGTGTTTCTGGTCGCC GTCACGACGAACCTCAGCAGCTGGCTGGCCTTCAACGGCGACCAGTGGTA TGTATTCGTGCGCAATCGCTACCGCATACCGTATGACACCTGCACCGTGC GTCAACAAGCACTGCGAATTTCAGCAGCTGGCTGGCCTCCAATGGGGACC AGTGGTAAGTATTGCACGCAATCGTTACCGCGAACCGTATGGTAGATTCC TTTGACATGTGTCAACAAGTGATCGGCAACGCGCATTGAGGCTTTCAAGG TGTTCACAGAGTTACATGTAGATGCCAAGTGCAAGTCCATGGATATCCAC CATCTGGGCTGTTTCGCACCCTGAGCGAAAATTGATACAAAAGTACATGG TTGTTTGATCATCTAAAATACGTCACCGCTGGGCATTGCGCGCGAGCTGT CTGAGCGATGGCATACTGCAGCATGCTACTCCAATGTGAACAAGTGCACA CCTGGCGCGCGATACGCCTGTGCGTGTGACATCGGAGTGTACCCCTTCAC TCTCCACCATTGAGGGTTTCAGGGGGAGCGCGTCGCCGCAGTGCCCAAGA GAATCGGGCGCCTAGTAGGTGCGCAACGCGGCTGGTTGTGCAGCTGGCAC TTTCGCAAACCCAGTACTGTTCGTGCGTGGGCTAGACATCACCCCTACAC GTAACCCTTAATTCAGAACGTCAGCATTGGGGGTGCCCAAGAGTATCCCA CAAGATGATGCCGCTGAACTTGGGGTAAGAACTAGGGTTAAGTTTGGCGC TGTGGATATGCACGACGAGCTGATGAGTTATCACTTCGACTCATCTCTCT GACTCACCACTCATCCAGCCCTCTGCATCGCTGCCGCTTTGTGTGACAGT TGCCACCGACCCTAGTCCCCATTCTGCCCGCAACTTCAACTTTGCAGGCA GTACGACTTCCAGAAAGTGGTGACGTGCTCCGCCATCGTATACGGGTTCG GCGCGGTAGTGCCGCTGCTTGTGTGGGCCGCGTTCCGGCAGCTGGACGTC AAGCTGTCGCTCATCCACGTGCTCTGCACGCACGGGTGAGCCATCCTGCC AGCGACTTGTCTGCTGCTTTTGAGAAGCGTCGACGAGGGTTAGGGTTGGG GTTAGAGTCGGATGTACAGTCTGAAGCCGGGTGGCGTGCGTTGTTAGGGT TAGTTTAGGGTTAAGGTTAGGGTTAGGGTTAGGGTCAAGCTGTCGCTGAT CCACGTGCTCTGCACGCATGGGTGAGCCAGCCTCCTGCCAATGCCGCCTG TTCAAAGGTGTTGTCAACCGAGATGTGAAGTTACGCGTCTGCCGGAAGCG TCGTCAGTTGGCATGTGAAGCGTGAAACGAGCTCGCGAACATATTCGGCC GGCTCAGTGCACGCGCTGCTGCCTCGCCACTGCCGCCGCCGCCGAGCCTC TGCCGCTTTGCACCAGTGCTGTCACTGATGCGCGCGGGGCACTCTCTCAG CAGCGCTTGATTGAAGCGTGCGCCTTTCGGCGGCTTTTTGGGCTCGCTGC GCTGTGGGAACGGCTACGGCGAACTGCCCCACTCGCAGCTACACAGCTGC CTCCGGGAAAAGCCCATCATGTCAGCGCGAGTAGCATGGCAGATTGCTCC TATGGCCGCTGTGCGGTGACGGCGCGGGCGCACCGCACTTTCTCATGTCT ACCACCGCACCCCCCTCTTGACGCTGCGCGATCTGACGTCGCTGCCACAC ATGGTCGTATGCTGCGCGCGCCGGCGCAGGTACGGGCAGGCGGTCTTCTT GCCAGCAGCGCTCATCTGTGCGGTGCCCAACGGGATGTTCTCAACGGTGA GCCGCTGCGCTTAATCCCAGCCCTAACCCTACTTTCAATAGCGTAGTGGC GCACACCTTAGGGTTAGAGTTAGGGTTAGGGTTACTTCCACGCGTCGCCT TTGTTGCGCTTACGGCAGCTCATTGCTATTCTATTGTGCTCAAAGGGATG CTCCTGAGGTACTGCGCAACGCTCTCTCTGCGCCCGTGCCGCCCGCGTCC CAGAGGCTGTTCCGTGTTGAAAATCTCCAATTTGAAGTAGAGCATTGAGG CGCATCCGCAGAGCGACGCAGGCGGTGACTCAGAAGCTGGTACCGGCAGC ACGCATGATTGTAGCTTGCGCCGCGCCCGCGCTTCGCGTCACCAAAGGCG TCGCAAAAGGGTGGCCATGATCGTGTGCATTAATTGCGTACTGCATGCAC GGGGAGCTCCGCACATCGCGCCATACGGCGCTGCATGCAATTCGCTGCCC AGCTCTAGAGGTAGCCCCAAACCCTACCACTCGATGGCCGCCTTGCCGAG CGTTGCAAGCTGGCCTTGGTGAAGGCCACGAGAGAGTATAGACGCTGCCG TGTCGATCGCGTTGCATAGCGCGGCAGGTCTGCCGCGCGGCGTGAGCGAT GCGCAGCCCCCTTGCCGGCCCCTTTGGGGTATGTACGCATACGGTATCGC GCGCATGCACCAGCCCAGCAGCTGGAACCAGTGGATCCACTTCAGGGACC ACATGCGCCTCCCTCACCGCATCAGTAGCGACGATACGGTCGAGCAGCGG GGGGGGGTGGGGCTCTGATGCAGTTCAGCTGCCTGCCCTGGCCTATGACG GCGCCAAATGCAGTGGCGCGCAAGGCGCGGGTGCACAGCGCTCTACGCCG GCGTGCGCGACGCTGCGGTCGTGCTGGCCTCCCCTCACGGTACACATTTT TCTTGGTGAGCAGGAACAGGGAGGAGAGCACTGGCGGCGGCTGCGCTGGC GAATGTTGGGGTCTCGGCCTGCTGCAGTGCTCAGGTTTGAGTGTCAAGTC ATGGTGCCACCACAGTCAGCGGCGCAATGCCAGTGTGCTCACCAATACAG TGCAGGCCTGAAATTGCTGCGCACACACACGCTTGTATGCCCACGGTCAT TGCTGGGGCAGACGCGCGCGCGCGTCTGCCCCAGGTCACGCTGGCGACCT GCGCGGTGCGTCAACTCTTGCAGTGCTGCGTGCGCGCCATGATGAACTTC AAGTGACTCTATTGACTCGACTTCTTCCTGATGTCGTCATGGCGCAGGTG GCTTTGGGGGTGGCCGCCGTCATGTCAACACTGTTCCTGCTGAGGACCCT GACGCCACCGGTCATGGAGCACAATCCGGTGAGGACCTGCATTCTCTTGC TGCTGGTGCAGAGCTGCAGGCTCTTGTGTGAAGCTGTGATGCCATGTTTG AGACAATTTTCGACTTGGGAAGCTTGCAAGAAGGAACATTATTAGCGCCG GGCTTTCGGCCGCATGCTTGAGGTTCCAACGCTCGGTGTCAGATTGAGGC ATTTTAATGCGAGTGGAGTCGGCAGGGAGCACGAAAGCAAACAGCACGTG CTTGACCGCAGTGCAAGTCAAGTGGTGTCAGCAGGAAGCACCGAATCAAA CATCTCATGCTTGCAAAACATTGCATGCTTAATTGCAGTGCCCTCAATGT CGTCCTAGTGTGCCAGCCTTCATAGGAGGCATATACTGCAATCGCAACAT CTATAGATCTCCAGGCTATGCTCGCGTGCCTCTGCGCACTATCTGAAACT CGCTGTACTCCGAACCCCACTCTAACAGCGCGTCGTCCAACGCGGCGCTG CACTGCTGATTTCAGCCCCAGCATCATCCATAGCCCACACGTGTTTCCGA GTCTTGTGTGTCGGCATTTCAGTGTGTTGGCATCTCTGACGCTCACTAAT TGTGAATGGGCTGCAGCTGCCAATCTCACGCGTGCCATTTCCCCTCCTGT AAATCCCTCGTCGTGCACCACAGACATGGGCGATGATCATAGTGGGTGTC CTCGTGGCAGAGCAGGTCACGTTTGCCATGCTGCTCAAGTTCCTCTTCTA CTACCAATGAGGGCAACGCGCGCAGCAGCCCCACTGAAGAGCCGGTGGCC GAGCACTGTCTTCCACCATCTTCAATGGAAAGTTGAAGTTTGGCTGCCCA CTGGCTCTGTAGGCTACACCTGCTCGTGCACCACTGCCAGATGGACTGTG CTTTCGCTGCGCATGCTGCAGCTGTGTGGCACGGAAAATCTCACTGAGAG GGCCTTGGGACACAGTTGGGCGTTGGGGGGATGGGGCTGCTAGAGCATTG TCATTTCCCATCAATTACTACAACACACTGATACGCC
back to top

Coding sequence (CDS) from alignment at Contig_22:714154..726040+

>mRNA_6395 ID=mRNA_6395|Name=jgi.p|Trimin1|348303|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1239bp|location=Sequence derived from alignment at Contig_22:714154..726040+ (Tribonema minus UTEX_B_3156 )
ATGAACAGCAGCAAGGGCGAGGAGGAGAAGGACAAGGATGCCGCGGTCGA
CTCTAGGGTACCGTCCCTGGAGGCGATCGTGGTGTTCTTCGACCTCGTGC
ACTGCGAGATGAGTCAGCACCGGGACGCGTACGGGCTCGCGGCCACTGGC
AGCCTCAGCACCGACACGCCCACACTATCGCCGCCGCAGCAGCCGTACAG
CACGGCGGGCACGGCGACGCCGCCTTGGCACGGCGGGCACGTCGACGCCG
CCGTGGTCAACACCGGCACTCCAACAGGATCGCCGCCGCGGCAGCCGTAC
AGCACTGCGGGCACGTCGACGCCGCCGTGGGTGACGGACTCGCCGGCGCC
GCCGCCGCACATAGGGGGCGGCGGCGGGGGGCGCATGGGCAGCCCCAGCA
CGCCTCAGCAGGCGCCGCAGCAGGCCGCGAGCGTGCGGGGGTCGCTGTGC
GGGTGCTTCACGGTCGAGTACTACAAGCCGTACTTCAACGTGGATACGGG
CGATGTCTACAAGCGCTGGCTCGGCAGCATGCTGTTCTGCCGGCGGCAGA
ATGGCTTCGTGGAGCTCATGGGGGAGAACCCGGATGCATATGGTCCCTTC
TGGAACGCAACGACCCTGGTGTTTCTGGTCGCCGTCACGACGAACCTCAG
CAGCTGGCTGGCCTTCAACGGCGACCAGTGGTATGTATTCGTGCGCAATC
GCTACCGCATACCGCAGTACGACTTCCAGAAAGTGGTGACGTGCTCCGCC
ATCGTATACGGGTTCGGCGCGGTAGTGCCGCTGCTTGTGTGGGCCGCGTT
CCGGCAGCTGGACGTCAAGCTGTCGCTCATCCACGTGCTCTGCACGCACG
GGTACGGGCAGGCGGTCTTCTTGCCAGCAGCGCTCATCTGTGCGGTGCCC
AACGGGATGTTCTCAACGCCCAGCAGCTGGAACCAGTGGATCCACTTCAG
GGACCACATGCGCCTCCCTCACCGCATCAGTAGCGACGATACGTGGCGCG
CAAGGCGCGGGTGCACAGCGCTCTACGCCGGCGTGCGCGACGCTGCGGTC
GTCACGCTGGCGACCTGCGCGGTGGCTTTGGGGGTGGCCGCCGTCATGTC
AACACTGTTCCTGCTGAGGACCCTGACGCCACCGGTCATGGAGCACAATC
CGACATGGGCGATGATCATAGTGGGTGTCCTCGTGGCAGAGCAGGTCACG
TTTGCCATGCTGCTCAAGTTCCTCTTCTACTACCAATGA
back to top