mRNA_6376 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134141
Unique NamemRNA_6376
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: A0A835Z1Q6_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q6_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.690e-54
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW
Sbjct:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 78
[Close]
BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.140e-38
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V +G+KNWGQLAA MPGRTSKQCRERW HHLDP++ K +YT EED  IL LQ +LGNKWS+IA HLPGRTENA+KIRW
Sbjct:   94 VGKGFKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRW 171
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BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: A0A7S2UZV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZV2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.930e-34
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:   16 KNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            KNWGQLA  MPGRTSKQCRERW HHLDP + K +YTAEEDA IL LQ  LGNKWS+IA  +PGRTENA+KIRW
Sbjct:    1 KNWGQLAEQMPGRTSKQCRERWNHHLDPTVKKGEYTAEEDAAILQLQASLGNKWSEIAKQIPGRTENAVKIRW 73
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BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 117 bits (292), Expect = 1.190e-31
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V+ G KNWGQ+A  +PGRTSKQCRERW +HLDP+I + +Y+AEED  IL  Q  LGN+WS IA  LPGRTE+A+KIRW
Sbjct:   76 VAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 153
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BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.130e-30
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V+ G+KNWG L+A +PGRTSKQCRERW HHLDP I K  +T EED  I++LQ+ +GNKW++IA HL GRTENA KIRW
Sbjct:  135 VNEGHKNWGSLSARVPGRTSKQCRERWCHHLDPRIVKGGWTEEEDQIIVSLQQQMGNKWAKIAQHLDGRTENATKIRW 212
[Close]
BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: A0A418B0H6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B0H6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.020e-30
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V+ G KNWGQ+A+H+PGRTSKQCRERW +HLDP INK +YT EED  I+ +Q  LGN+WS IA  L GRTE+A+KIRW
Sbjct:  175 VAEGRKNWGQVASHIPGRTSKQCRERWCNHLDPNINKGNYTREEDQLIVDMQAKLGNRWSVIAQQLSGRTEDAVKIRW 252
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BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: D7FQG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG8_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.070e-30
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V+ G+KNWG L+A +PGRTSKQCRERW HHLDP I K  +T  ED  I+ LQ+ +GNKW+QIA HL GRTENA KIRW
Sbjct:   84 VNEGHKNWGSLSARIPGRTSKQCRERWCHHLDPRIVKGGWTEAEDQMIILLQQQMGNKWAQIAQHLDGRTENATKIRW 161
[Close]
BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: A0A6G0XBC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBC5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.260e-30
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V+ G KNWGQ+A+H+PGRTSKQCRERW +HLDP INK +YT EED  I+ +Q  LGN+WS IA  L GRTE+A+KIRW
Sbjct:  164 VAEGRKNWGQVASHIPGRTSKQCRERWCNHLDPNINKGNYTREEDQLIIDMQAKLGNRWSVIAQQLTGRTEDAVKIRW 241
[Close]
BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 115 bits (287), Expect = 4.540e-30
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V+ G KNWGQ+A  +PGRTSKQCRERW +HLDP+I + +Y+ EED  IL  Q  LGN+WS IA  LPGRTE+A+KIRW
Sbjct:  149 VAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 226
[Close]
BLAST of jgi.p|Trimin1|134141 vs. uniprot
Match: D8LSJ8_ECTSI (Myb-like DNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ8_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.510e-30
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIKIRW 234
            V +G++NWGQ+A+ M GRTSKQCRERW HHLDPA+ K  YT EED  I+ LQ ++GN+W+ IA  L GRTENA+KIRW
Sbjct:  167 VEKGFRNWGQVASFMDGRTSKQCRERWCHHLDPAVRKGGYTTEEDELIIFLQGEVGNRWADIAKRLTGRTENAVKIRW 244
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134141 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1Q6_9STRA2.690e-54100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2UU49_9STRA2.140e-3875.64Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2UZV2_9STRA1.930e-3476.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3G911_PHYRM1.190e-3165.38Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6H5K458_9PHAE1.130e-3066.67MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A418B0H6_9STRA4.020e-3066.67Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
D7FQG8_ECTSI4.070e-3066.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0XBC5_9STRA4.260e-3066.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D0NJN5_PHYIT4.540e-3064.10Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
D8LSJ8_ECTSI5.510e-3064.10Myb-like DNA-binding protein, putative n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:572523..574777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134141|gw1.22.31.1
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2880.D7FQG8|-
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue6.68e-31
Seed ortholog2880.D7FQG8
Hectar predicted targeting categoryother localisation
TranscriptId134463
TrackFilteredModels1
ProteinId134141
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134141gene_6376Tribonema minus UTEX_B_3156 geneContig_22 572523..574777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134141Trimin1|134141|gw1.22.31.1Tribonema minus UTEX_B_3156 polypeptideContig_22 572523..574777 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6376_3exon_6376_3Tribonema minus UTEX_B_3156 exonContig_22 572523..572546 -
exon_6376_2exon_6376_2Tribonema minus UTEX_B_3156 exonContig_22 573516..573663 -
exon_6376_1exon_6376_1Tribonema minus UTEX_B_3156 exonContig_22 574716..574777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6376CDS_6376Tribonema minus UTEX_B_3156 CDSContig_22 574716..574777 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6376 ID=mRNA_6376|Name=jgi.p|Trimin1|134141|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_22:572523..574777- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCAGCAGGGGGTACAAGAACTGGGGGCAGCTGGCGGCGCACATGCCGGG
GAGGACTTCAAAGCAGTGCCGCGAGCGCTGGATACACCACCTAGACCCTG
CCATCAACAAGAGCGACTACACGGCGGAGGAGGACGCCAAAATACTGGCG
CTGCAGAAGGACCTCGGCAATAAGTGGAGCCAGATCGCGCTGCACCTGCC
GGGGAGGACGGAAAATGCCATCAAGATCCGCTGG
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protein sequence of jgi.p|Trimin1|134141

>Trimin1|134141|gw1.22.31.1 ID=Trimin1|134141|gw1.22.31.1|Name=jgi.p|Trimin1|134141|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
VSRGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKILA
LQKDLGNKWSQIALHLPGRTENAIKIRW
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mRNA from alignment at Contig_22:572523..574777-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6376 ID=mRNA_6376|Name=jgi.p|Trimin1|134141|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2255bp|location=Sequence derived from alignment at Contig_22:572523..574777- (Tribonema minus UTEX_B_3156 )
GTCAGCAGGGGGTACAAGAACTGGGGGCAGCTGGCGGCGCACATGCCGGG
GAGGACTTCAAAGTGAGCACGCACGCTTGCGGCACGTTAAGCTCGTCAAG
CTCGCAAAGTGGCACGTCTTGTGTACTTCAAAGTATACCGACGCGTGACA
CACCTCCTCCTTGTCATGGACACTTGGTTCGCACCGCAGTGCGGCGGACT
GTAAACAAGAGGTGTGAGAAGGAAGAAATGGCTGTTTACGGTTGTGCCCT
CACAGGCCTCCTTGCTCAATCTGTCATCTGCAAACGTTGATCCGGTCACT
CTTTAATTCTCCATGGAGCATGTGGATGACATGCCGGCATTTTTCCCGCA
AAGTAGGCATGACAACGTTGTGGTGCAGGCATGATTGGTCGCAAGAAGGA
ATGAGCTTCGTGAGGCAGTCACGGTAATTGTTGAAACACAGCTGAGCTTT
GCGGCATGCACGCACACAGCTCTCTACGAGCACAAAGAGCATGCCACTGC
GCACAAGCCGCCTGCGACTCTTCTTGCGCAGGCTGGCGGAGCCTGCGACG
TTAAGCGCACCGCATGCTGCTGCCATCAAATGATCAGTGATGCTGCGTGC
AATAGCAAGCGCCCCTCACAAACCCTAGCCCGTGTCCTCCACAAACCACC
GTATCCTCCACTTTCTGCTGGCCTGTCTATCGATACCACAACGTAGGCTG
ACTCAGAGTCATAGAGGCGGCTACTTCTCAGCCCGTAGCTGAGCATCACG
CGCGCAACTGGTCGAGGCGTGCCATACGTGAAACAGCCATGACCCACGTC
TCATTGAACTGGCCAGGGCATGGCGGAAACAACTGCGGAAACAACGGTGG
CACCCCTCAAATTGCATGCCTTTGACACTGGAAACAGCGCTGCTTCAGCT
GCCAATTCGCCGCATATGGTGACATGCAACTGCCGGTGCCGCCGCCGCCA
CCGCTGCCGCCGCCACCGCTGCCGCTGCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCATGGCCCCCGCCGCCGCCGCCGCCGCCGCTGCAGCATTCGCCGC
GTTTGCTGACATGTCGTTGCCGCTGCCATTGCCGCCGCTGCCGCCGCCGA
TGCTGCCACTGCAGGCAGTGCCGCGAGCGCTGGATACACCACCTAGACCC
TGCCATCAACAAGAGCGACTACACGGCGGAGGAGGACGCCAAAATACTGG
CGCTGCAGAAGGACCTCGGCAATAAGTGGAGCCAGATCGCGCTGCACCTG
CCGGGGAGGACGGTGAGGCAGCGCTCAGACTGGTGGACTGAATCTTATTA
TTAGATCGCGCCTTATTATTAGATCGCGCTGCGTCTGCCGGGGAGGACGG
TGAGGCGTGCGCAGCAGTCGCCTTATTTGTGTGATGTGCAGTGTCATCAC
GTACCAGCGCTCAAACTGGTGGACTGAATCACCTTGTTGCGAGACTGCGC
TACAACTGGTGGGCTGCATCACCTTATTATCAGATCGCGCTGCACCTGCC
GGGGACGACGGTGAGGCAGCGCTCAGACTGGTGGACTGAATCGCCTTATC
ATAAGATCGCGCTGCACCTGCCGGGGAGGAGGGTGAGGCCGCACGCAGCA
GCGCTCAGACTGCTGGACTGAAGTAGCTTATTTGTGCGATGTCCAGTGTC
ATCACGCACGAGTGCAAACTGGTGGACTGAGTCGCCTCATTATCAGATCG
CGCTGCACCTGCCAGGGAGGACGGTGAGGCGCATGCAGCAGCGCTCAGTC
TGGTGGACTGAACAACTTTATTAGCGTGGCATACAGTGTCATCACGCACC
AGCGCTCAAACTGGTGGACTGAGTCCCCTTATTTGTGTGATGTACCCCCG
GCTCCGCCCTGCTGACAGCAACTGAAAAGGCAACTTTTTCACAACGCAAG
GGCGGCGCACGCTGAAGGCGCACAGGTTTGTGCTTAGAGTTGGGGTTACG
GTAGCGGCGTACGCCCCCCCCCCCCCCCTCGTCAACCCCTAATCGCACTC
CTCACACTCTCTGACACTGGCTGTCGCGCTGCGCAGCGCACGCAGCGAGA
CTCACGCACCCATACTCAGATCGCTCTCCGACAAAATTCGCCATCCCCTC
TGCTGGGCACAGATGTTCATGCCCCCCCCCCCCCACCCGCAGGTGCGCAG
GGCGCCGGTTATGCATGTACTTCATCTTGAAGTGATTTCTGAAGTACATG
TTCTGTTGTTGCCGTCACACACACCCTCCAGGAAAATGCCATCAAGATCC
GCTGG
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Coding sequence (CDS) from alignment at Contig_22:572523..574777-

>mRNA_6376 ID=mRNA_6376|Name=jgi.p|Trimin1|134141|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_22:572523..574777- (Tribonema minus UTEX_B_3156 )
GTCAGCAGGGGGTACAAGAACTGGGGGCAGCTGGCGGCGCACATGCCGGG
GAGGACTTCAAAGCAGTGCCGCGAGCGCTGGATACACCACCTAGACCCTG
CCATCAACAAGAGCGACTACACGGCGGAGGAGGACGCCAAAATACTGGCG
CTGCAGAAGGACCTCGGCAATAAGTGGAGCCAGATCGCGCTGCACCTGCC
GGGGAGGACGGAAAATGCCATCAAGATCCGCTGG
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