mRNA_6363 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162702
Unique NamemRNA_6363
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: A0A835ZAF2_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF2_9STRA)

HSP 1 Score: 242 bits (617), Expect = 4.860e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 MPQLPSREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            MPQLPSREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT
Sbjct:    1 MPQLPSREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 120
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: UPI0014194B5D (DNA polymerase iota isoform X3 n=1 Tax=Lacerta agilis TaxID=80427 RepID=UPI0014194B5D)

HSP 1 Score: 134 bits (338), Expect = 1.850e-35
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 1 
Query:   16 SREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            S   S  R I+H+D+D FYAQVE++ +P LRGRP+GVQQKYLMVTCNY AR AGVKK  +V  A + CPEL++ NGE LTKYRE S +  ALL   +  P VERL LDE ++D+T
Sbjct:   41 SAGSSLHRIIVHLDLDCFYAQVEMICNPELRGRPLGVQQKYLMVTCNYEARNAGVKKCMSVKEAKEKCPELVLVNGEDLTKYREMSYKFTALL--EEFTPLVERLGLDENFVDIT 153
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: A0A8B7ZRY7_ACAPL (DNA polymerase iota-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZRY7_ACAPL)

HSP 1 Score: 135 bits (341), Expect = 1.140e-34
Identity = 64/116 (55.17%), Postives = 87/116 (75.00%), Query Frame = 1 
Query:   13 PSREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            P+ + SH R I+HIDID FYAQVE++ +P+LR +P+G+QQKYL+VTCNY+AR+ GV K+  +T ALQ CPEL++ +GE LT YRE S R+  LL     +P VERL  DE ++DV+
Sbjct:   39 PNMKVSHSRTIVHIDIDCFYAQVEMVRNPALRTKPLGIQQKYLLVTCNYIARSRGVTKLMRITDALQRCPELVIVSGEDLTHYREMSYRITELL--RQFSPTVERLGFDENFIDVS 152
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: UPI000A2A9CB6 (DNA polymerase iota n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9CB6)

HSP 1 Score: 134 bits (338), Expect = 1.860e-34
Identity = 64/112 (57.14%), Postives = 86/112 (76.79%), Query Frame = 1 
Query:   25 ESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            + H R IIHIDID FYAQVE+LL+P L+ +P+G+QQK+++VTCNYVAR  G+ K+  ++ A + CP+L++ NGE LTKYR+ S+RV  LLLG  + P VERL  DE +LDVT
Sbjct:   80 KGHERTIIHIDIDCFYAQVEMLLNPYLQNKPLGIQQKHIVVTCNYVARERGLTKLMRISDAKKKCPDLVLVNGEDLTKYRDFSKRVNDLLLG--ITPXVERLGFDENFLDVT 189
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: UPI0018D9001A (DNA polymerase iota-like isoform X1 n=3 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9001A)

HSP 1 Score: 134 bits (337), Expect = 4.140e-34
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:   28 SHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            SH R IIHID+D +YAQVE++ +P+LR +P+G+QQKYL+VTCNYVARA GV K+  +T ALQ CP+L++ NGE LT YRE S R+  LL     +P VERL  DE ++DV+
Sbjct:   79 SHTRTIIHIDLDCYYAQVEMVRNPALRTKPLGIQQKYLLVTCNYVARARGVTKLMRITDALQRCPDLVIVNGEDLTHYREMSYRITELL--QQFSPLVERLGFDENFIDVS 187
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: A0A8J2WRK3_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WRK3_9CRUS)

HSP 1 Score: 132 bits (331), Expect = 8.460e-34
Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 1 
Query:   25 ESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            E H R IIHIDID FYAQVE++L+PSLRG+P+G++QK ++VTCNY ARA GV+K+ ++  AL+ CP L++ NGE L KYR+ SE++  +L     +P VE+L LDE ++D+T
Sbjct:   21 EKHDRVIIHIDIDCFYAQVEMILNPSLRGKPLGIKQKNIVVTCNYEARALGVEKLMSIKTALEKCPSLVLANGEDLKKYRDMSEKIYQIL--QSFSPFVEKLGLDENFIDIT 130
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: UPI0003318DBD (DNA polymerase iota n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003318DBD)

HSP 1 Score: 132 bits (333), Expect = 1.230e-33
Identity = 63/113 (55.75%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:   22 EESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            E+S  R I+H+D+D FYAQVE++L+P L+G+P+GVQQKYL+VTCNY AR  GVKK+ +V  A + CP+L++ NGE LT+YRE S +V  LL   + +P VERL  DE ++DVT
Sbjct:   11 EDSSSRVIVHVDLDCFYAQVEMILNPELKGKPLGVQQKYLVVTCNYEARKLGVKKVMSVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELL--EEFSPIVERLGFDENFVDVT 121
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: A0A670IWK2_PODMU (DNA polymerase iota n=6 Tax=Lacertinae TaxID=162266 RepID=A0A670IWK2_PODMU)

HSP 1 Score: 132 bits (333), Expect = 1.270e-33
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:    7 QLPSREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            ++ S   S  R I+H+D+D FYAQVE++ +P LR +P+GVQQKYLMVTCNY AR AGVKK  +V  A + CPEL++ NGE LTKYRE S +  ALL   +  P VERL LDE ++D+T
Sbjct:   38 KVASAGSSQHRIIVHLDLDCFYAQVEMICNPELRSKPLGVQQKYLMVTCNYEARNAGVKKCMSVKEAKEKCPELVLVNGEDLTKYREMSYKFTALL--EEFTPLVERLGLDENFVDIT 153
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: A0A8D0HQF3_SPHPU (DNA polymerase iota n=2 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0HQF3_SPHPU)

HSP 1 Score: 125 bits (315), Expect = 3.400e-33
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:   37 RAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            R I+H D+D FYAQVE+L +P LRG+P+ VQQKYL+VTCNY AR  GVKK+ +V  A + CP+L++ NGE LTKYRE S +V ALL   + +P VERL  DE ++D+T
Sbjct:   54 RVIVHTDLDCFYAQVEMLHNPELRGKPLCVQQKYLVVTCNYEARELGVKKLMSVKEANEKCPQLVLVNGEDLTKYREMSYKVTALL--EEFSPLVERLGFDENFVDIT 159
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BLAST of jgi.p|Trimin1|162702 vs. uniprot
Match: UPI0018867B76 (DNA polymerase iota isoform X4 n=1 Tax=Falco rusticolus TaxID=120794 RepID=UPI0018867B76)

HSP 1 Score: 128 bits (322), Expect = 4.080e-33
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:   16 SREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLGADVAPCVERLNLDECWLDVT 360
            S   + RR I+HID+D FYAQVE++ +P LR +P+GVQQKY++VTCNY AR  GVKK+ +V  A + CP+LI+ NGE LT YRE S +V  LL   +  P VERL  DE ++D+T
Sbjct:   37 SARSTARRVIVHIDLDCFYAQVEIIRNPELRDKPLGVQQKYIVVTCNYAARKLGVKKLMSVKDAKEKCPQLILVNGEDLTPYREMSYKVTELL--GEFCPLVERLGFDENFVDIT 149
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAF2_9STRA4.860e-81100.00UmuC domain-containing protein n=1 Tax=Tribonema m... [more]
UPI0014194B5D1.850e-3559.13DNA polymerase iota isoform X3 n=1 Tax=Lacerta agi... [more]
A0A8B7ZRY7_ACAPL1.140e-3455.17DNA polymerase iota-like isoform X1 n=2 Tax=Acanth... [more]
UPI000A2A9CB61.860e-3457.14DNA polymerase iota n=1 Tax=Exaiptasia diaphana Ta... [more]
UPI0018D9001A4.140e-3457.66DNA polymerase iota-like isoform X1 n=3 Tax=Patiri... [more]
A0A8J2WRK3_9CRUS8.460e-3454.46Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
UPI0003318DBD1.230e-3355.75DNA polymerase iota n=1 Tax=Sorex araneus TaxID=42... [more]
A0A670IWK2_PODMU1.270e-3355.93DNA polymerase iota n=6 Tax=Lacertinae TaxID=16226... [more]
A0A8D0HQF3_SPHPU3.400e-3357.41DNA polymerase iota n=2 Tax=Sphenodon punctatus Ta... [more]
UPI0018867B764.080e-3353.91DNA polymerase iota isoform X4 n=1 Tax=Falco rusti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:397561..398528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162702|e_gw1.22.146.1
BRITEko00000,ko00001,ko01000,ko03400
KEGG Pathwayko03460,map03460
KEGG koko:K03510
EC2.7.7.7
GOsGO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904
Preferred namePOLI
DescriptionDNA synthesis involved in DNA repair
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0389@1|root,KOG2095@2759|Eukaryota
Evalue1.56e-34
Seed ortholog227086.JGI_V11_132461
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-repair protein, UmuC-like
Ec32 orthologEc-17_000370.1
TranscriptId163024
TrackFilteredModels1
ProteinId162702
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162702gene_6363Tribonema minus UTEX_B_3156 geneContig_22 397561..398528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162702Trimin1|162702|e_gw1.22.146.1Tribonema minus UTEX_B_3156 polypeptideContig_22 397561..398528 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6363_3exon_6363_3Tribonema minus UTEX_B_3156 exonContig_22 397561..397657 -
exon_6363_2exon_6363_2Tribonema minus UTEX_B_3156 exonContig_22 398069..398253 -
exon_6363_1exon_6363_1Tribonema minus UTEX_B_3156 exonContig_22 398451..398528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6363CDS_6363Tribonema minus UTEX_B_3156 CDSContig_22 398451..398528 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6363 ID=mRNA_6363|Name=jgi.p|Trimin1|162702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_22:397561..398528- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGCTGCCTAGTCGTGAGGAAAGCCATCGGAGGGCAATCATTCA
TATCGACATTGACTCCTTCTATGCTCAGGTTGAGGTGCTTTTGGACCCTT
CCCTACGAGGGCGGCCAGTGGGTGTACAGCAGAAGTACCTGATGGTGACC
TGCAACTACGTAGCCAGGGCAGCAGGGGTGAAGAAGATGCAGGCGGTGAC
TGGCGCACTGCAGGCATGCCCCGAGCTGATTGTCAAGAACGGCGAGACGC
TCACCAAGTATCGGGAGGCCAGTGAGAGGGTGCAGGCGCTGCTGCTGGGC
GCAGACGTCGCGCCCTGCGTGGAGCGTCTCAACCTGGATGAATGCTGGCT
TGACGTGACG
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protein sequence of jgi.p|Trimin1|162702

>Trimin1|162702|e_gw1.22.146.1 ID=Trimin1|162702|e_gw1.22.146.1|Name=jgi.p|Trimin1|162702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp
MPQLPSREESHRRAIIHIDIDSFYAQVEVLLDPSLRGRPVGVQQKYLMVT
CNYVARAAGVKKMQAVTGALQACPELIVKNGETLTKYREASERVQALLLG
ADVAPCVERLNLDECWLDVT
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mRNA from alignment at Contig_22:397561..398528-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6363 ID=mRNA_6363|Name=jgi.p|Trimin1|162702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=968bp|location=Sequence derived from alignment at Contig_22:397561..398528- (Tribonema minus UTEX_B_3156 )
ATGCCGCAGCTGCCTAGTCGTGAGGAAAGCCATCGGAGGGCAATCATTCA
TATCGACATTGACTCCTTCTATGCTCAGGTGGGAGTCCAAGATCCTCTTC
CAAAGCTCGGCACGCACACACACTGTTGACGTTCACTATGGCCAGAATGA
TCAGCAAAATGTTCAGCAACAACCTAGTTTTGTCACAACTTCGGCCATGC
ATTCTGGTGGGCGACCTGATCTGAGTGTTTTGGAAGCGAACAAGAAATGA
AGCAGCCTGCGCTCCTGTTGCACAGGTTGAGGTGCTTTTGGACCCTTCCC
TACGAGGGCGGCCAGTGGGTGTACAGCAGAAGTACCTGATGGTGACCTGC
AACTACGTAGCCAGGGCAGCAGGGGTGAAGAAGATGCAGGCGGTGACTGG
CGCACTGCAGGCATGCCCCGAGCTGATTGTCAAGAACGGCGAGACGCTCA
CCAAGTATCGGTAAGAGGAGGCAAAACCTTGCACCAGGTGCCTTGCTGGG
GCTTTGAGAGCCGGGGGCCTGAGACAAATTGACGGGGGGGAATACTTGTG
GCAGCACAAGGTGCATCCGCATGCAGAGCGCTTCCAGGTTGTGCTTAGCA
TGCTGCACACGGGCTGCGCAGCTCCTGCTTGCTCATGTAGCATGCGCATG
GAAGTCAACTCCTGTGGTACTGCTGAGCCGCAGGCATCGCGTCAGTCTAA
CGCGGCAGCACCGTATTTGGCAGCCTTTCGCAGTGCTGTTGCTATGCGGC
ATCGGCATCGGATCAAACACACCCATCCTCAGTATGATGAGCCGGCGCAC
GAGTGAACCGTGCTGTGCAAATGCTGGCCTCACGTCATAGACACGCGACA
TGCACCCTCTGCATGCACCAGGGAGGCCAGTGAGAGGGTGCAGGCGCTGC
TGCTGGGCGCAGACGTCGCGCCCTGCGTGGAGCGTCTCAACCTGGATGAA
TGCTGGCTTGACGTGACG
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Coding sequence (CDS) from alignment at Contig_22:397561..398528-

>mRNA_6363 ID=mRNA_6363|Name=jgi.p|Trimin1|162702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_22:397561..398528- (Tribonema minus UTEX_B_3156 )
ATGCCGCAGCTGCCTAGTCGTGAGGAAAGCCATCGGAGGGCAATCATTCA
TATCGACATTGACTCCTTCTATGCTCAGGTTGAGGTGCTTTTGGACCCTT
CCCTACGAGGGCGGCCAGTGGGTGTACAGCAGAAGTACCTGATGGTGACC
TGCAACTACGTAGCCAGGGCAGCAGGGGTGAAGAAGATGCAGGCGGTGAC
TGGCGCACTGCAGGCATGCCCCGAGCTGATTGTCAAGAACGGCGAGACGC
TCACCAAGTATCGGGAGGCCAGTGAGAGGGTGCAGGCGCTGCTGCTGGGC
GCAGACGTCGCGCCCTGCGTGGAGCGTCTCAACCTGGATGAATGCTGGCT
TGACGTGACG
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