mRNA_6347 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: A0A835Z8B8_9STRA (Radical SAM core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B8_9STRA) HSP 1 Score: 387 bits (993), Expect = 2.410e-135 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1 Query: 1 MLDRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGVSRRRRRCXXXXXXXXXRVRPCTCRSVLPAS 636 MLDRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGVSRRRRRCXXXXXXXXXRVRPCTCRSVLPAS Sbjct: 1 MLDRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGVSRRRRRCXXXXXXXXXRVRPCTCRSVLPAS 212
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: UPI001E5DA08F (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH n=1 Tax=Thermorudis peleae TaxID=1382356 RepID=UPI001E5DA08F) HSP 1 Score: 207 bits (527), Expect = 1.750e-61 Identity = 112/179 (62.57%), Postives = 134/179 (74.86%), Query Frame = 1 Query: 10 RTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 R L Q ++VA ILDRAL+ G+ ITV EG +L A G +L A+ ADELRRR VGDVVTY +NRNINFTN C+KRCGFCAFSR + EAY LPIDE+VRRA+EA E GATEVC+QAGLPP MRG Y E+ A+K ALP +H+H FSPEEV YGA R+ CSV +++ L+DAGV Sbjct: 20 RLLDQLDRTVARILDRALS--GEDITVEEGERLFAAEGLELNALILVADELRRRR-VGDVVTYVINRNINFTNVCIKRCGFCAFSRGHREEEAYFLPIDEVVRRAQEAWEL-GATEVCIQAGLPPKMRGDYYIELTKAIKRALPDIHIHGFSPEEVWYGATRARCSVADYLQALKDAGV 194
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: A0A2H5Z5S6_9BACT (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase n=3 Tax=Bacteria TaxID=2 RepID=A0A2H5Z5S6_9BACT) HSP 1 Score: 206 bits (524), Expect = 3.960e-61 Identity = 112/181 (61.88%), Postives = 131/181 (72.38%), Query Frame = 1 Query: 4 LDRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 LDR L A+ VA ILDR LA G +TV EG +L G DL V ADELRRR+ VGDVVTY VNRNINFTN C+KRCGFCAFSR + + Y LP++EIVRRAREA E GATEVC+QAGLPP M LY I A+KA LP +H+H FSPEEVVYGA R+ CS+ +++RLR+AGV Sbjct: 11 LDRLLALASPDVARILDRVLA--GHEVTVDEGERLFETHGRDLFLVTLVADELRRRA-VGDVVTYVVNRNINFTNVCIKRCGFCAFSRGHREEQGYFLPLEEIVRRAREAWEL-GATEVCIQAGLPPKMDPDLYPTICRAIKAELPGIHIHGFSPEEVVYGALRARCSIAEYLQRLREAGV 187
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: A0A7C5RQS8_9CHLR (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C5RQS8_9CHLR) HSP 1 Score: 200 bits (509), Expect = 5.880e-59 Identity = 108/180 (60.00%), Postives = 132/180 (73.33%), Query Frame = 1 Query: 7 DRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 DR L + VA IL++AL+ G+ I V EG L R +G +L AV ADELRRR VGDVVTY +NRNINFTN C+K CGFCAFSR EAY LPIDE+VRRA+EA E GATEVC+QAGLPP + G Y E+ A+K ALP +H+HAFSPEEVVYGA R+GCS+ +++ L++AGV Sbjct: 19 DRILALVDRQVAGILEKALS--GEEIDVQEGEALFRTQGLELLAVILVADELRRRR-VGDVVTYVINRNINFTNVCIKHCGFCAFSRDHRVEEAYFLPIDEVVRRAQEAWEL-GATEVCIQAGLPPKLDGYYYVELTKAIKRALPDIHIHAFSPEEVVYGAIRAGCSIEDYLKALKEAGV 194
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: A0A536LZ19_9CHLR (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536LZ19_9CHLR) HSP 1 Score: 198 bits (503), Expect = 5.170e-58 Identity = 106/181 (58.56%), Postives = 134/181 (74.03%), Query Frame = 1 Query: 7 DRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGG-DLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 DR L + VA +LDRALA G+ I+V EG LL A+G ++ A+ AAD+LRRR+ VGDVVTY +NRNINFTN C+K C FCAFSR+ + EAY LP++EIVRRAREA E GATEVC+QAGLPP M+G Y E+ A+K LP +H+H FSPEEV+YGA RS C++ ++ L+DAGV Sbjct: 20 DRLLGEVDSGVAHVLDRALA--GEDISVEEGTSLLEAQGSANMNAIVLAADDLRRRT-VGDVVTYIINRNINFTNVCIKHCTFCAFSRSHREEEAYYLPVEEIVRRAREAWEL-GATEVCIQAGLPPKMKGDYYLELTRAIKKELPEIHIHGFSPEEVLYGAIRSRCTIREYLVGLKDAGV 196
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: A0A523ZA91_9CHLR (CofH family radical SAM protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A523ZA91_9CHLR) HSP 1 Score: 192 bits (487), Expect = 1.230e-57 Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 1 Query: 7 DRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 DR L + VA +LD+AL G+ I+V E L ARG +L A+ AADELRRRS VGDVVTY +NRNINFTN C+K CGFCAFSR + EAY LPI+E+VRRA EA + GATEVC+QAGLPP M G Y ++ A+K LP +H+H FSPEEV+YG+ R+ CS+ + L+ AGV Sbjct: 17 DRLLGSIDREVAGVLDKALQ--GEDISVEEATTLFEARGPELNAIVLAADELRRRS-VGDVVTYVINRNINFTNVCIKHCGFCAFSRDHREEEAYFLPIEEVVRRASEAWDL-GATEVCIQAGLPPKMDGHYYVDLTRAIKKELPDIHIHGFSPEEVLYGSIRARCSIEDHLRALKQAGV 192
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: I4EHB0_9CHLR (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase n=1 Tax=Nitrolancea hollandica Lb TaxID=1129897 RepID=I4EHB0_9CHLR) HSP 1 Score: 196 bits (499), Expect = 1.540e-57 Identity = 107/181 (59.12%), Postives = 129/181 (71.27%), Query Frame = 1 Query: 4 LDRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 LD L+ + A ILDRAL G ITV EG +L G +L + A ADELRRRS VGDVVTY VNRNINFTN C+KRCGFCAFSR + + Y LP++E++RRAREA E GATEVC+QAGLPP M G LY I A+KA +P +H+H FSPEEV+YGA RS C++ F+ RL+ AGV Sbjct: 12 LDSLLSCCDPATALILDRAL--GDYEITVDEGERLFSVHGVELLLLTAVADELRRRS-VGDVVTYIVNRNINFTNVCIKRCGFCAFSRGHREEQGYFLPLEEVLRRAREAWEV-GATEVCIQAGLPPKMDGDLYPSICRAIKAEIPDLHIHGFSPEEVLYGAIRSRCTIEEFIARLKAAGV 188
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: A0A3N0A5L1_9ARCH (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase n=3 Tax=unclassified Nitrosopumilus TaxID=2619919 RepID=A0A3N0A5L1_9ARCH) HSP 1 Score: 196 bits (497), Expect = 1.940e-57 Identity = 104/180 (57.78%), Postives = 131/180 (72.78%), Query Frame = 1 Query: 7 DRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 + L A ++AIL+RAL+ + I+V EGA L ARG D V ADELRRR VGD VTY VNRNINFTN C+K+CGFCAFSR E Y+LP +EIVRRA+EA + GATEVC+QAGLPP M+G+LYEEI ++KA +P +H+H FSPEE++YGA RSG + F+ R++DAGV Sbjct: 4 EALLRDADPEISAILERALSE--KEISVIEGAALYGARGLDYHLVGMVADELRRRR-VGDTVTYVVNRNINFTNVCIKQCGFCAFSRDFRQEEGYMLPTEEIVRRAKEA-RSLGATEVCIQAGLPPDMKGSLYEEICRSIKAEIPEIHIHGFSPEEILYGAARSGITPEEFLGRMKDAGV 179
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: A0A6L7TK58_9CHLR (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TK58_9CHLR) HSP 1 Score: 196 bits (497), Expect = 3.200e-57 Identity = 103/170 (60.59%), Postives = 128/170 (75.29%), Query Frame = 1 Query: 37 VAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 VAA+LDRALA G+ IT EGA L G + A+ AADELRRR+ VGD+ TY VNRN+NFTN C+KRCGFCAFSR + E Y LPI+EIVRRA+EA + YGATEVC+QAGLPP M G LY + +A+K ALP +H+H FSPEEV+YG+ RS C++ ++E L+ AGV Sbjct: 24 VAAVLDRALA--GEDITAEEGAVLFATTGPEYNAMVLAADELRRRT-VGDIATYVVNRNVNFTNVCIKRCGFCAFSRDFREEEGYFLPIEEIVRRAQEAWD-YGATEVCIQAGLPPQMEGDLYIRLCSAIKEALPDMHIHGFSPEEVLYGSIRSRCTIREYLEGLKAAGV 189
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Match: B9L535_THERP (5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) TaxID=309801 RepID=B9L535_THERP) HSP 1 Score: 195 bits (496), Expect = 5.170e-57 Identity = 108/182 (59.34%), Postives = 130/182 (71.43%), Query Frame = 1 Query: 1 MLDRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAADELRRRSSVGDVVTYAVNRNINFTNACVKRCGFCAFSRTGVDAEAYLLPIDEIVRRAREATETYGATEVCVQAGLPPGMRGTLYEEIAAALKAALPRVHLHAFSPEEVVYGARRSGCSVGAFVERLRDAGV 546 +L+R L A+ VA ILDRAL+ G +T+ EG +L G DL V ADELRRR+ VGDVVTY VNRNINFTN C+KRCGFCAFSR + + Y LP++EIVRRAREA E GATEVC+QAGLPP M LY I A+KA LP +H+H FSPEEVVYGA R+ S+ ++ RL+ AGV Sbjct: 10 LLERQLGLASPEVARILDRALS--GHELTIEEGERLFATHGRDLFLVTLVADELRRRA-VGDVVTYVVNRNINFTNVCIKRCGFCAFSRGHREEQGYFLPLEEIVRRAREAWEL-GATEVCIQAGLPPKMDPDLYPTICRAIKAELPEIHIHGFSPEEVVYGALRARTSIEEYLLRLKAAGV 187 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6347 ID=mRNA_6347|Name=jgi.p|Trimin1|162681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_22:292254..294734- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGGACAGGACCCTGACTCAGGCAACCAAAAGCGTGGCGGCCATCCTback to top protein sequence of jgi.p|Trimin1|162681 >Trimin1|162681|e_gw1.22.38.1 ID=Trimin1|162681|e_gw1.22.38.1|Name=jgi.p|Trimin1|162681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp MLDRTLTQATKSVAAILDRALAYGGQVITVSEGAQLLRARGGDLRAVAAAback to top mRNA from alignment at Contig_22:292254..294734- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6347 ID=mRNA_6347|Name=jgi.p|Trimin1|162681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2481bp|location=Sequence derived from alignment at Contig_22:292254..294734- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_22:292254..294734- >mRNA_6347 ID=mRNA_6347|Name=jgi.p|Trimin1|162681|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_22:292254..294734- (Tribonema minus UTEX_B_3156 )back to top |