mRNA_6304 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144809
Unique NamemRNA_6304
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 560 bits (1444), Expect = 1.380e-202
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 774
            GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW
Sbjct:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 258          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA)

HSP 1 Score: 421 bits (1083), Expect = 4.100e-145
Identity = 193/257 (75.10%), Postives = 220/257 (85.60%), Query Frame = 1
Query:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYS 771
            GAKFQTV KYQ V+ LPG+Y+YLV+P+L+AG++VVL+TEF DGSY +LQAIGDG FD  LNKFID+W+ADGNR VWIRPMHEFNGDWY  GTYR GNS   FKRA++HV  VF+NRGANAKFQL YNC N RND  SF  WWPG   VDM++CSGYNRAGLD++HQ WQSFSDVYSSGY KMAAL G KPLG+AE SSTTWQSYSKPQWI+DAF+A+V KFTRV Q NWFLINK+G+WGLNSD ER AFGDS+N+YS
Sbjct:   74 GAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYS 330          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA)

HSP 1 Score: 388 bits (996), Expect = 4.740e-134
Identity = 177/258 (68.60%), Postives = 207/258 (80.23%), Query Frame = 1
Query:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 774
            GA F  +VKYQ+++ L G+Y+YLVK YLD GK V          Y+NLQ I DG FD  LN FIDD  + GN+Q+WIR +HEFNGDWY WGTYR+GN    FKRAF+HV  VF+ RGAN KFQL YNC NP +DG SF +W+PGGDVVDMILCSGYNRAG+DS+H SWQSFS+V+SSGYYKMA+LDGGKPLGVAETSST+W    K QWI+DAF+A+VN+FTRVEQCNWFLINK G+W LNSD ERHAFGDS+N+YSW
Sbjct:   19 GANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 275          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 3.110e-133
Identity = 195/292 (66.78%), Postives = 219/292 (75.00%), Query Frame = 1
Query:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRV----------------------------------EQCNWFLINKDG-NWGLNSDDERHAFGDSINQYS 771
            GAKFQ VVKYQ V  LPG+YKYL+KP+LDA ++VVLV EF DGSYANLQAIGDG FD  LNKFID+WKADGNR +WIRPMHEFNGDWYSWGTYR+GN +A F+RAF+HVAYVFKNRGA AK QL YNC N R +  +F+ W+PG DVVDM+LCSGYNRAG DS H SW+SF+DV++ GY +MAAL G KPLGVAETSSTTWQS SKPQWIKDAF A+VNKFTR+                                   Q NWFLINK   NWGLNSD ER AFGDSIN+YS
Sbjct:  292 GAKFQVVVKYQKVKELPGKYKYLLKPHLDANRTVVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSGNDRAKFQRAFKHVAYVFKNRGAQAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVNKFTRIXXXXXXXXXXXXXXEQFDCIYINKGDTFNCGLDTSQHNWFLINKGSLNWGLNSDAERKAFGDSINKYS 583          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.460e-98
Identity = 138/240 (57.50%), Postives = 176/240 (73.33%), Query Frame = 1
Query:   58 YKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 774
            Y   VKP LD    VVLV +F    Y NLQ IGDG++D +LN+FID WK DGNR++ IRPMHEFNGDWY WGT+R G NS+  FKRAFQHVA VFK RGAN K QL YNC + +NDG+ F++W+PG DVVD+ILCS YNR+GL+ +   W+SF +V+  GY +MA++ G KPLG+ ET ST W    KP WI DAFN LV K+TRV++C+W L NK+G+W LN+D +  AFGD + ++ +
Sbjct:    2 YWNTVKPALDKVDDVVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGGGNSKDNFKRAFQHVAGVFKRRGANVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEGH--GWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGG-DKPAWISDAFNQLVYKYTRVQECHWLLENKEGDWDLNTDGDVWAFGDGMRKFEF 238          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.070e-97
Identity = 141/261 (54.02%), Postives = 188/261 (72.03%), Query Frame = 1
Query:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGS-YANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTS-FSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINK-DGNWGLNSDDERHAFGDSINQYS 771
            GAKFQ VVK+QSV  +  +Y +LVKP+LDAG   V+V EF+D + + NL+ I +G +D  L KF+D+   DGNR+VW+RP+HEFNGDWY WGTYR G N++ +FKRA++HV ++  N+GAN KFQL YNCVN +ND T+ F +WWPG   VDM++CSGYNRAG D++HQ W +F +V+ + Y +M  L G KPLGV ETS   ++   K QWI+DAF   VN + R+E   WFL NK DG W LNS +E  AFG+S+ +Y+
Sbjct:   88 GAKFQAVVKFQSVQKM--RYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYT 346          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA)

HSP 1 Score: 295 bits (754), Expect = 1.140e-97
Identity = 135/228 (59.21%), Postives = 171/228 (75.00%), Query Frame = 1
Query:  100 VVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGN--WGLNSDDERHAFGDSINQYSW 774
            VVLV +     Y +LQA+G+G++D  LN FID+WKADGNR++ IRPMHEFNGDWY WGTYR G NS+A FKRA+ HV+ +F+ RGANA  QL YNCVNP +D TSF  W+PG + VDM+LCS YNRAG+DS+HQ W++F  V+  GY +MAAL G K LGVAE  +T+W  +SK QWI+DAF ALVN++TRVE+  W L NKDG+  W LN+  E  AFG S+ +Y +
Sbjct:    2 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 229          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA)

HSP 1 Score: 295 bits (755), Expect = 5.730e-93
Identity = 148/261 (56.70%), Postives = 179/261 (68.58%), Query Frame = 1
Query:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYA-NLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTS-FSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKD-GNWGLNSDDERHAFGDSINQYS 771
            GA+FQ VVK+Q V  +  +Y +LVKPYLD G  VV+VTEF+D     NLQ IGDG +D  L +FID+ K DGNR VWIRPMHEFNGDWY WGTY  G N+   F RA+QH+  VF  + AN KFQL YNC N ++D T+ F+ WWPG + VDM++CSGYNRAG D NH  W +F DVY++ Y +MAAL G KPLGV E S   +  Y K QWI+DAF      FTRV Q  WFL NKD G W LN+ DE  AFGD + +Y+
Sbjct:   53 GAQFQVVVKFQPVQQM--RYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYT 311          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 274 bits (700), Expect = 5.180e-88
Identity = 139/259 (53.67%), Postives = 168/259 (64.86%), Query Frame = 1
Query:    4 AKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDG-TSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKD-GNWGLNSDDERHAFGDSINQYS 771
            A+FQ V K+  +  +  +Y +LVK YLD G  VVLV +F+D    NL+ IGDG +D  L KF D+   DGNR+VW+RPMHEFNGDWY WGTY  G N+   F RA++HV  V   +GAN KFQLGYNCVN  ND  T FS WWPG DVVDM++CS YNRAG D  H  WQ++ DV+  GY +MAAL    PLGV E  +       K  WI+DAF A    + RVEQ  WFL +KD G W LNS DE  AF DS+ QY+
Sbjct:   47 AQFQVVTKFGFIKTM--RYPFLVKNYLDQGFKVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYT 303          
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 288 bits (738), Expect = 9.090e-86
Identity = 142/262 (54.20%), Postives = 180/262 (68.70%), Query Frame = 1
Query:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSY-ANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTS-FSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINK--DGNWGLNSDDERHAFGDSINQYS 771
            GA+FQ VVK+Q V  +  +Y +LVKPYLD G  VV+VTEF+D     NL  IG GK+D  L +F+D+ KADGN++VWIRPMHEFNGDWY WGTY  G N++  F RA++HV  VF  + AN KFQL YNC N ++D T+ F++WWPG + VDM++CSGYNRAG D NH  W +F DVY + Y +M AL G KPLGV E S   ++ Y K QWI DAF   VN + RV+Q  WFL NK  DG W LNS ++  AF + +  Y+
Sbjct: 1056 GAQFQVVVKFQPVQSM--RYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYT 1315          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVC0_9STRA1.380e-202100.00Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YS57_9STRA4.100e-14575.10Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YT60_9STRA4.740e-13468.60Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YZR6_9STRA3.110e-13366.78GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YW31_9STRA1.460e-9857.50Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A836CGL5_9STRA1.070e-9754.02Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YXK1_9STRA1.140e-9759.21Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CJI7_9STRA5.730e-9356.70Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YWE9_9STRA5.180e-8853.67Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z6S0_9STRA9.090e-8654.20GH26 domain-containing protein n=1 Tax=Tribonema m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:893991..895865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144809|gw1.47.145.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
KEGG koko:K01179
EC3.2.1.4
GOsGO:0003674,GO:0003824,GO:0004553,GO:0008810,GO:0016787,GO:0016798
Preferred namecelH
DescriptionGlycosyl hydrolase family 26
COG categoryG
Max annot lvl186801|Clostridia
EggNOG OGsCOG2730@1|root,COG4124@1|root,COG2730@2|Bacteria,COG4124@2|Bacteria,1U8S3@1239|Firmicutes,24CGR@186801|Clostridia,3WHKP@541000|Ruminococcaceae
Evalue1.08e-32
Seed ortholog203119.Cthe_1472
Hectar predicted targeting categoryother localisation
TranscriptId145131
TrackFilteredModels1
ProteinId144809
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144809gene_6304Tribonema minus UTEX_B_3156 geneContig_47 893991..895865 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6304_1exon_6304_1Tribonema minus UTEX_B_3156 exonContig_47 893991..894243 +
exon_6304_2exon_6304_2Tribonema minus UTEX_B_3156 exonContig_47 894491..894701 +
exon_6304_3exon_6304_3Tribonema minus UTEX_B_3156 exonContig_47 895039..895254 +
exon_6304_4exon_6304_4Tribonema minus UTEX_B_3156 exonContig_47 895772..895865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6304CDS_6304Tribonema minus UTEX_B_3156 CDSContig_47 893991..894243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144809Trimin1|144809|gw1.47.145.1Tribonema minus UTEX_B_3156 polypeptideContig_47 893991..895865 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6304 ID=mRNA_6304|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_47:893991..895865+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGCCAAGTTCCAGACGGTCGTAAAGTACCAGTCGGTGACGGGCCTGCC
GGGCCAGTACAAGTACCTCGTCAAGCCGTACCTCGACGCGGGCAAGAGCG
TCGTGCTCGTGACGGAGTTCATCGACGGCAGCTACGCGAACCTGCAGGCG
ATCGGCGACGGCAAGTTCGACTGGGCGCTCAACAAATTCATCGACGACTG
GAAGGCCGACGGCAACCGCCAAGTGTGGATTCGCCCCATGCACGAGTTCA
ACGGCGACTGGTACAGCTGGGGTACGTACCGCAACGGCAACTCGCAGGCC
CTGTTCAAGCGCGCCTTCCAGCACGTCGCGTACGTCTTCAAGAACCGCGG
CGCCAACGCCAAGTTCCAGCTGGGCTACAACTGTGTGAACCCGCGCAACG
ACGGCACGTCCTTCAGCAACTGGTGGCCGGGAGGTGACGTCGTCGACATG
ATCCTGTGCAGCGGCTACAACCGCGCTGGCCTCGACTCGAACCACCAGTC
GTGGCAGAGCTTCAGCGACGTGTACAGCAGCGGCTACTACAAAATGGCAG
CGCTCGACGGCGGCAAGCCCCTGGGCGTCGCCGAGACAAGCTCCACGACG
TGGCAGTCGTACAGCAAGCCGCAGTGGATCAAGGACGCGTTCAACGCCCT
CGTCAACAAGTTCACGCGCGTTGAGCAGTGCAACTGGTTCCTCATCAACA
AGGACGGCAACTGGGGGCTCAACAGCGACGACGAGCGCCACGCCTTTGGC
GACTCCATCAACCAGTACAGCTGG
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protein sequence of jgi.p|Trimin1|144809

>Trimin1|144809|gw1.47.145.1 ID=Trimin1|144809|gw1.47.145.1|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQA
IGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQA
LFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDM
ILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTT
WQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFG
DSINQYSW
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mRNA from alignment at Contig_47:893991..895865+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6304 ID=mRNA_6304|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1875bp|location=Sequence derived from alignment at Contig_47:893991..895865+ (Tribonema minus UTEX_B_3156 )
GGCGCCAAGTTCCAGACGGTCGTAAAGTACCAGTCGGTGACGGGCCTGCC GGGCCAGTACAAGTACCTCGTCAAGCCGTACCTCGACGCGGGCAAGAGCG TCGTGCTCGTGACGGAGTTCATCGACGGCAGCTACGCGAACCTGCAGGCG ATCGGCGACGGCAAGTTCGACTGGGCGCTCAACAAATTCATCGACGACTG GAAGGCCGACGGCAACCGCCAAGTGTGGATTCGCCCCATGCACGAGTTCA ACGGTGAGAGCGTCAGCTCTTGAACTTCATCATCAACTTGAACTTTAGCA GCGCCTTCAGCGTAGGGCGACCGCGTCGCGCGCAGGTGCTCTGCGTACAC GTTCAACGGTACCGCAGCAGTGCTCGCCCATCATCATTCCACTCGCCAGC TTCCTCGGAGGCGCAGCTCCGTACAGACACCGCAATTCACTCGCGCGCAC TCATGCCCCCCTCCCCCCCCCCCTTCCCCCCCCTTCCGCCCTCGCAACAG GCGACTGGTACAGCTGGGGTACGTACCGCAACGGCAACTCGCAGGCCCTG TTCAAGCGCGCCTTCCAGCACGTCGCGTACGTCTTCAAGAACCGCGGCGC CAACGCCAAGTTCCAGCTGGGCTACAACTGTGTGAACCCGCGCAACGACG GCACGTCCTTCAGCAACTGGTGGCCGGGAGGTGACGTCGTCGACATGATC CTGTGCAGCGGGTGAGTACAGCTGAACTCGTTTGGGGCGCGTCTGCACTG CTGGTGCACTCGTGGTGTGCCTCATAGAGTGTGTGGTGTCCGGTTGAGAG CGCGCGTGTGCCCATGTCCTGTATCTGCACTGTTGTTGTAGTTGTGGTGA TTTACATGCCGTATGTTCATTGATGAATATACATGTGGTACAGGCAATGT GACATCACCTCACCACCACCCTCTTCTACACCCCCTGAGACGCAAGCACC GCCGCAGCCGCCACCGTCTCAGCCACTCTGACCTCCCCTCGCGCTGCCCC CCCCCCCCCCCCCCCCCCCCCCCGCGCTGATCGCTGCCCCCGACGCAGCT ACAACCGCGCTGGCCTCGACTCGAACCACCAGTCGTGGCAGAGCTTCAGC GACGTGTACAGCAGCGGCTACTACAAAATGGCAGCGCTCGACGGCGGCAA GCCCCTGGGCGTCGCCGAGACAAGCTCCACGACGTGGCAGTCGTACAGCA AGCCGCAGTGGATCAAGGACGCGTTCAACGCCCTCGTCAACAAGTTCACG CGCGTTGAGCAGTGGTGAGTCTGAGTCGCATTTATGAGTTTTCAGTCGCA GCTCACGAGTCGTTTGCACTTGTTGTGAGTGTAGTCGCAGCTCAGCTCAT GCACTTGTGGCGCGTTCAACGCCCTCGTCAACAAGTTTACGCGCGTCGAG CAGTGGTGAGTCGAAGTCGCATTCCTGAGTACCAGTCGCAGCCCACAAGT CACTTGCACTTGGGAGGTGTTCAACGCCTCGTCAACAAGTTCACGCGCGT CGAGCGGTGGTGAGTCACGCAGCGGCGCACATCACAGAACTGTAACCCGT GCGCCTTCGCGGGGCATGTATGCATCATGCCACATGTGCCAGTGCAACGA TGTTCAATCGGGCCCATGCACATTGCCCCAGTCGACAATGACTGTGCTCA CCATCTCTCCACCGCGTTTGCAACACCGCCAGCACCCACTGAGCATCCCG CTGTCGCGTGATTATCAGATGAAAGCTCACATCCCCCCCCCCCCCCCCCC CCCCCCTTCTCCCCCCTCTCGCCCGCCGCAGCAACTGGTTCCTCATCAAC AAGGACGGCAACTGGGGGCTCAACAGCGACGACGAGCGCCACGCCTTTGG CGACTCCATCAACCAGTACAGCTGG
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Coding sequence (CDS) from alignment at Contig_47:893991..895865+

>mRNA_6304 ID=mRNA_6304|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_47:893991..895865+ (Tribonema minus UTEX_B_3156 )
GGCGCCAAGTTCCAGACGGTCGTAAAGTACCAGTCGGTGACGGGCCTGCC
GGGCCAGTACAAGTACCTCGTCAAGCCGTACCTCGACGCGGGCAAGAGCG
TCGTGCTCGTGACGGAGTTCATCGACGGCAGCTACGCGAACCTGCAGGCG
ATCGGCGACGGCAAGTTCGACTGGGCGCTCAACAAATTCATCGACGACTG
GAAGGCCGACGGCAACCGCCAAGTGTGGATTCGCCCCATGCACGAGTTCA
ACGGCGACTGGTACAGCTGGGGTACGTACCGCAACGGCAACTCGCAGGCC
CTGTTCAAGCGCGCCTTCCAGCACGTCGCGTACGTCTTCAAGAACCGCGG
CGCCAACGCCAAGTTCCAGCTGGGCTACAACTGTGTGAACCCGCGCAACG
ACGGCACGTCCTTCAGCAACTGGTGGCCGGGAGGTGACGTCGTCGACATG
ATCCTGTGCAGCGGCTACAACCGCGCTGGCCTCGACTCGAACCACCAGTC
GTGGCAGAGCTTCAGCGACGTGTACAGCAGCGGCTACTACAAAATGGCAG
CGCTCGACGGCGGCAAGCCCCTGGGCGTCGCCGAGACAAGCTCCACGACG
TGGCAGTCGTACAGCAAGCCGCAGTGGATCAAGGACGCGTTCAACGCCCT
CGTCAACAAGTTCACGCGCGTTGAGCAGTGCAACTGGTTCCTCATCAACA
AGGACGGCAACTGGGGGCTCAACAGCGACGACGAGCGCCACGCCTTTGGC
GACTCCATCAACCAGTACAGCTGG
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