mRNA_6304 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA) HSP 1 Score: 560 bits (1444), Expect = 1.380e-202 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1 Query: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 774 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW Sbjct: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 258
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA) HSP 1 Score: 421 bits (1083), Expect = 4.100e-145 Identity = 193/257 (75.10%), Postives = 220/257 (85.60%), Query Frame = 1 Query: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYS 771 GAKFQTV KYQ V+ LPG+Y+YLV+P+L+AG++VVL+TEF DGSY +LQAIGDG FD LNKFID+W+ADGNR VWIRPMHEFNGDWY GTYR GNS FKRA++HV VF+NRGANAKFQL YNC N RND SF WWPG VDM++CSGYNRAGLD++HQ WQSFSDVYSSGY KMAAL G KPLG+AE SSTTWQSYSKPQWI+DAF+A+V KFTRV Q NWFLINK+G+WGLNSD ER AFGDS+N+YS Sbjct: 74 GAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYS 330
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA) HSP 1 Score: 388 bits (996), Expect = 4.740e-134 Identity = 177/258 (68.60%), Postives = 207/258 (80.23%), Query Frame = 1 Query: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 774 GA F +VKYQ+++ L G+Y+YLVK YLD GK V Y+NLQ I DG FD LN FIDD + GN+Q+WIR +HEFNGDWY WGTYR+GN FKRAF+HV VF+ RGAN KFQL YNC NP +DG SF +W+PGGDVVDMILCSGYNRAG+DS+H SWQSFS+V+SSGYYKMA+LDGGKPLGVAETSST+W K QWI+DAF+A+VN+FTRVEQCNWFLINK G+W LNSD ERHAFGDS+N+YSW Sbjct: 19 GANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 275
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA) HSP 1 Score: 402 bits (1033), Expect = 3.110e-133 Identity = 195/292 (66.78%), Postives = 219/292 (75.00%), Query Frame = 1 Query: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRV----------------------------------EQCNWFLINKDG-NWGLNSDDERHAFGDSINQYS 771 GAKFQ VVKYQ V LPG+YKYL+KP+LDA ++VVLV EF DGSYANLQAIGDG FD LNKFID+WKADGNR +WIRPMHEFNGDWYSWGTYR+GN +A F+RAF+HVAYVFKNRGA AK QL YNC N R + +F+ W+PG DVVDM+LCSGYNRAG DS H SW+SF+DV++ GY +MAAL G KPLGVAETSSTTWQS SKPQWIKDAF A+VNKFTR+ Q NWFLINK NWGLNSD ER AFGDSIN+YS Sbjct: 292 GAKFQVVVKYQKVKELPGKYKYLLKPHLDANRTVVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSGNDRAKFQRAFKHVAYVFKNRGAQAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVNKFTRIXXXXXXXXXXXXXXEQFDCIYINKGDTFNCGLDTSQHNWFLINKGSLNWGLNSDAERKAFGDSINKYS 583
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA) HSP 1 Score: 296 bits (759), Expect = 1.460e-98 Identity = 138/240 (57.50%), Postives = 176/240 (73.33%), Query Frame = 1 Query: 58 YKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 774 Y VKP LD VVLV +F Y NLQ IGDG++D +LN+FID WK DGNR++ IRPMHEFNGDWY WGT+R G NS+ FKRAFQHVA VFK RGAN K QL YNC + +NDG+ F++W+PG DVVD+ILCS YNR+GL+ + W+SF +V+ GY +MA++ G KPLG+ ET ST W KP WI DAFN LV K+TRV++C+W L NK+G+W LN+D + AFGD + ++ + Sbjct: 2 YWNTVKPALDKVDDVVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGGGNSKDNFKRAFQHVAGVFKRRGANVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEGH--GWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGG-DKPAWISDAFNQLVYKYTRVQECHWLLENKEGDWDLNTDGDVWAFGDGMRKFEF 238
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA) HSP 1 Score: 300 bits (767), Expect = 1.070e-97 Identity = 141/261 (54.02%), Postives = 188/261 (72.03%), Query Frame = 1 Query: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGS-YANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTS-FSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINK-DGNWGLNSDDERHAFGDSINQYS 771 GAKFQ VVK+QSV + +Y +LVKP+LDAG V+V EF+D + + NL+ I +G +D L KF+D+ DGNR+VW+RP+HEFNGDWY WGTYR G N++ +FKRA++HV ++ N+GAN KFQL YNCVN +ND T+ F +WWPG VDM++CSGYNRAG D++HQ W +F +V+ + Y +M L G KPLGV ETS ++ K QWI+DAF VN + R+E WFL NK DG W LNS +E AFG+S+ +Y+ Sbjct: 88 GAKFQAVVKFQSVQKM--RYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYT 346
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA) HSP 1 Score: 295 bits (754), Expect = 1.140e-97 Identity = 135/228 (59.21%), Postives = 171/228 (75.00%), Query Frame = 1 Query: 100 VVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGN--WGLNSDDERHAFGDSINQYSW 774 VVLV + Y +LQA+G+G++D LN FID+WKADGNR++ IRPMHEFNGDWY WGTYR G NS+A FKRA+ HV+ +F+ RGANA QL YNCVNP +D TSF W+PG + VDM+LCS YNRAG+DS+HQ W++F V+ GY +MAAL G K LGVAE +T+W +SK QWI+DAF ALVN++TRVE+ W L NKDG+ W LN+ E AFG S+ +Y + Sbjct: 2 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 229
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA) HSP 1 Score: 295 bits (755), Expect = 5.730e-93 Identity = 148/261 (56.70%), Postives = 179/261 (68.58%), Query Frame = 1 Query: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYA-NLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTS-FSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKD-GNWGLNSDDERHAFGDSINQYS 771 GA+FQ VVK+Q V + +Y +LVKPYLD G VV+VTEF+D NLQ IGDG +D L +FID+ K DGNR VWIRPMHEFNGDWY WGTY G N+ F RA+QH+ VF + AN KFQL YNC N ++D T+ F+ WWPG + VDM++CSGYNRAG D NH W +F DVY++ Y +MAAL G KPLGV E S + Y K QWI+DAF FTRV Q WFL NKD G W LN+ DE AFGD + +Y+ Sbjct: 53 GAQFQVVVKFQPVQQM--RYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYT 311
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA) HSP 1 Score: 274 bits (700), Expect = 5.180e-88 Identity = 139/259 (53.67%), Postives = 168/259 (64.86%), Query Frame = 1 Query: 4 AKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDG-TSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKD-GNWGLNSDDERHAFGDSINQYS 771 A+FQ V K+ + + +Y +LVK YLD G VVLV +F+D NL+ IGDG +D L KF D+ DGNR+VW+RPMHEFNGDWY WGTY G N+ F RA++HV V +GAN KFQLGYNCVN ND T FS WWPG DVVDM++CS YNRAG D H WQ++ DV+ GY +MAAL PLGV E + K WI+DAF A + RVEQ WFL +KD G W LNS DE AF DS+ QY+ Sbjct: 47 AQFQVVTKFGFIKTM--RYPFLVKNYLDQGFKVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYT 303
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA) HSP 1 Score: 288 bits (738), Expect = 9.090e-86 Identity = 142/262 (54.20%), Postives = 180/262 (68.70%), Query Frame = 1 Query: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSY-ANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTS-FSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINK--DGNWGLNSDDERHAFGDSINQYS 771 GA+FQ VVK+Q V + +Y +LVKPYLD G VV+VTEF+D NL IG GK+D L +F+D+ KADGN++VWIRPMHEFNGDWY WGTY G N++ F RA++HV VF + AN KFQL YNC N ++D T+ F++WWPG + VDM++CSGYNRAG D NH W +F DVY + Y +M AL G KPLGV E S ++ Y K QWI DAF VN + RV+Q WFL NK DG W LNS ++ AF + + Y+ Sbjct: 1056 GAQFQVVVKFQPVQSM--RYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYT 1315 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144809 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6304 ID=mRNA_6304|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_47:893991..895865+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGCCAAGTTCCAGACGGTCGTAAAGTACCAGTCGGTGACGGGCCTGCCback to top protein sequence of jgi.p|Trimin1|144809 >Trimin1|144809|gw1.47.145.1 ID=Trimin1|144809|gw1.47.145.1|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAback to top mRNA from alignment at Contig_47:893991..895865+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6304 ID=mRNA_6304|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1875bp|location=Sequence derived from alignment at Contig_47:893991..895865+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_47:893991..895865+ >mRNA_6304 ID=mRNA_6304|Name=jgi.p|Trimin1|144809|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_47:893991..895865+ (Tribonema minus UTEX_B_3156 )back to top |