mRNA_6257 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349710
Unique NamemRNA_6257
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A835Z0V4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V4_9STRA)

HSP 1 Score: 350 bits (898), Expect = 1.510e-119
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 3
Query:   60 MADDSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDSLPP 581
            MADDSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDSLPP
Sbjct:    1 MADDSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDSLPP 174          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A067CEZ1_SAPPC (Methyltransf_25 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEZ1_SAPPC)

HSP 1 Score: 184 bits (467), Expect = 3.210e-54
Identity = 88/170 (51.76%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   66 DDSDEDNPLP-RWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDS 572
            DD   +N  P  WLEGDSLAPPCQ+ YD+VQA+++FA V   D+V+DLGCGDGR C  AA + G R+ GIEIE  L+  F  ++    LQ +VR++H DL++ DLS+AT+IV YLLPEAL LL PKL   L+RGC +V NTWG+  + P  +  VG ++   L +YT  S
Sbjct:    8 DDEGYENEQPFMWLEGDSLAPPCQSDYDIVQAIIDFANVQPTDVVFDLGCGDGRICIGAARQHGCRAVGIEIEAPLIAKFEQSIAKYKLQDKVRMLHADLMDADLSEATVIVTYLLPEALTLLAPKLEAALTRGCRIVSNTWGIPGMTPAARVDVGQYANVPLYLYTLQS 177          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: M4BRJ3_HYAAE (Methyltranfer_dom domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRJ3_HYAAE)

HSP 1 Score: 182 bits (461), Expect = 3.190e-53
Identity = 92/177 (51.98%), Postives = 121/177 (68.36%), Query Frame = 3
Query:   54 ATMADDSDEDNPLP-RWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELS---RGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDS 572
            AT + D +E +P    W+EGDSLAPPCQ+  DVV  ++E A +T  D+++DLGCGDGR C EAA++FGAR+ G+EIEE L++ FR  V  K LQQ V V HGDLLE+DLSDAT+IV YLLPEAL  L  KLI+ L+   +   ++CNTWG++ L P  +   GP+    L +Y   S
Sbjct:    2 ATQSSDDEEADPGAFMWIEGDSLAPPCQSDRDVVAKIVEIACLTCDDVLFDLGCGDGRICIEAAKRFGARARGVEIEEFLIERFRRLVAVKDLQQLVSVSHGDLLEEDLSDATVIVTYLLPEALEQLSAKLIKLLNQPDKNVRIICNTWGIRDLTPDERHDTGPYGNVPLFVYRSSS 178          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A1V9YP44_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YP44_9STRA)

HSP 1 Score: 181 bits (460), Expect = 3.970e-53
Identity = 90/167 (53.89%), Postives = 113/167 (67.66%), Query Frame = 3
Query:   66 DDSDEDNPLP-RWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYT 563
            DD   +N  P  WLEGDSLAPPCQ+ YD+VQA+++FAGV   D+V+DLGCGDGR C  AA + G R+ GIEIE  L+  F  ++   GL   V V+H DL+E DLS AT+IV YLLPEAL LL PKL   L+RG  +V NTWG+  LVP  +A VG +    L +Y+
Sbjct:   12 DDEGYENEQPFMWLEGDSLAPPCQSDYDIVQAIVDFAGVQPTDVVFDLGCGDGRICIGAARQHGCRAVGIEIEAPLIAKFEQSIAKYGLADLVSVLHADLMEADLSSATVIVTYLLPEALTLLAPKLEAALARGARIVSNTWGVPGLVPTARADVGQYQNVPLYLYS 178          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A1W0A447_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A447_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.270e-53
Identity = 87/171 (50.88%), Postives = 119/171 (69.59%), Query Frame = 3
Query:   63 ADDSDE--DNPLP-RWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTR 566
            +D+ DE  +N  P  WLEGDSLAPPCQ+ Y++VQ++++FA VT  D+VYDLGCGDGR C  AA ++G R+ GIEIEE L+  F+ ++    LQ +VR VH DL+E DLS AT+IV YLLPEAL LL  KL + + +GC +V NTWG+  + P  +  VG +    L +Y++
Sbjct:    8 SDEEDEGYENEQPFMWLEGDSLAPPCQSDYEIVQSIVDFAKVTPSDVVYDLGCGDGRICIGAARRYGCRAVGIEIEEHLIAKFQQSIVKYNLQDKVRFVHADLMEADLSAATVIVTYLLPEALTLLSKKLEKAIEQGCRIVSNTWGIPGMTPKARIDVGQYQNVPLYLYSQ 178          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A2P4XRJ9_9STRA (Methyltranfer_dom domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRJ9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.970e-52
Identity = 90/168 (53.57%), Postives = 117/168 (69.64%), Query Frame = 3
Query:   69 DSDEDNPLP-RWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELS---RGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMY 560
            D DE NP    W+EGDSLAPPCQ+  DVV  ++E A ++  D+++DLGCGDGR C EAAE+FGAR+ G+EIEE L++ FR  + A GLQQ V V HGDLLE+DLSDAT+IV YLLP+AL  L PK  + LS   +   ++CNTWG++ L P  +   GP+    L +Y
Sbjct:    6 DDDELNPGAFMWIEGDSLAPPCQSDRDVVSKIVEIAKLSPHDVLFDLGCGDGRICIEAAERFGARARGVEIEEFLIKRFRELIVANGLQQLVSVSHGDLLEEDLSDATVIVTYLLPDALDQLTPKFTKLLSQTDKDVRIICNTWGIRGLTPDERIDAGPYGNVPLFVY 173          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A425C4H3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C4H3_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.050e-52
Identity = 85/169 (50.30%), Postives = 122/169 (72.19%), Query Frame = 3
Query:   63 ADDSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELS---RGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMY 560
            +D++++++ +  W+EGDSLAPPCQ+  DVV  ++E A VT  D+V+DLGCGDGR C EAA++FGAR+ G+EIEE L++ FR  + A  +QQ V V HGDLLE+DLS+AT+IV YLLP+AL  L PK ++ L+   +   ++CNTWG++ L P  +  VGP+    L +Y
Sbjct:   12 SDENEQNSGVFMWIEGDSLAPPCQSDRDVVSKIVEIARVTPDDVVFDLGCGDGRICIEAAKRFGARARGVEIEEFLIERFRKLIVANEIQQLVSVSHGDLLEEDLSEATVIVTYLLPDALDQLTPKFVKLLNQSDKNVRIICNTWGIRGLTPDERYDVGPYDNVPLFVY 180          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A485LFZ9_9STRA (Aste57867_19079 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFZ9_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.900e-52
Identity = 88/169 (52.07%), Postives = 111/169 (65.68%), Query Frame = 3
Query:   69 DSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDSL 575
            D + D     WLEGDSLAPPCQ+ YDVV  +L FA VT+ D+V+DLGCGDGR C  AA KFGA + G+EIE+ L+Q F+  +    L+ RV V HGDL+E DLS AT+IV YLLPEAL +L  KL   L RGC +V N+W +  +    +  VGPF+   L +Y  D L
Sbjct:   10 DDEGDESTYMWLEGDSLAPPCQSEYDVVYDILRFAKVTSSDVVFDLGCGDGRICIAAARKFGASAVGVEIEDHLIQKFQQKITRYALEDRVHVRHGDLMETDLSRATVIVTYLLPEALVMLTDKLKACLDRGCRIVSNSWHIPGMDAQAKINVGPFNNVPLFLYVNDPL 178          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A024UAF7_9STRA (rADc domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAF7_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.570e-51
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = 3
Query:   54 ATMADDSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTR 566
            A  +DD  +++    WLEGDSLAPPCQ+ YDVV  +L+ A VTA D+V+DLGCGDGR C  AA K+GA + GIEIEE L+  F+  ++   L  RVRV+HGDLL+ DLS AT+IV YLLPEALA L       L+RGC +V N+W L   V   +  VGPF    L +Y +
Sbjct:    6 AEWSDDEGDESTF-MWLEGDSLAPPCQSEYDVVHEILKLANVTANDVVFDLGCGDGRICIAAARKYGASAVGIEIEEHLIAKFQGKIDRYNLHDRVRVLHGDLLDADLSSATVIVTYLLPEALAQLTHTFEAALARGCRIVSNSWHLSGFVHCDKKDVGPFDNVPLYLYHK 175          
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Match: A0A662WR70_9STRA (Methyltranfer_dom domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WR70_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.210e-51
Identity = 86/164 (52.44%), Postives = 112/164 (68.29%), Query Frame = 3
Query:   99 WLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELS---RGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDSLPP 581
            W+EGDSLAPPCQ+  DVV  ++  A VT  D++ DLGCGDGR C EAA++FGAR+ G+EIEE L++ FR  + A GLQ+ V V HGDL E+DLSDAT+IV YLLPEAL  L PK  + LS   R   ++CNTWG++ L P  +   GP+    L +Y   ++ P
Sbjct:   31 WMEGDSLAPPCQSDRDVVSKIVAIANVTPDDVLIDLGCGDGRICIEAAKRFGARARGVEIEEFLIERFRQLIAADGLQELVSVSHGDLREEDLSDATVIVTYLLPEALDELTPKFTKLLSQKGRDVRIICNTWGIRGLTPTERHDAGPYGNVPLFVYRSSAVSP 194          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349710 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0V4_9STRA1.510e-119100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A067CEZ1_SAPPC3.210e-5451.76Methyltransf_25 domain-containing protein n=2 Tax=... [more]
M4BRJ3_HYAAE3.190e-5351.98Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A1V9YP44_9STRA3.970e-5353.89Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A1W0A447_9STRA5.270e-5350.88Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A2P4XRJ9_9STRA1.970e-5253.57Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A425C4H3_9STRA3.050e-5250.30Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A485LFZ9_9STRA4.900e-5252.07Aste57867_19079 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UAF7_9STRA1.570e-5152.05rADc domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A662WR70_9STRA2.210e-5152.44Methyltranfer_dom domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:604860..607019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349710|estExt_Genemark1.C_Ctg_470079
DescriptionMycolic acid cyclopropane synthetase
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0500@1|root,2RY3R@2759|Eukaryota
Evalue5.78e-55
Seed ortholog2880.D7FUC1
Hectar predicted targeting categoryother localisation
TranscriptId350032
TrackFilteredModels1
ProteinId349710
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349710gene_6257Tribonema minus UTEX_B_3156 geneContig_47 604860..607019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349710Trimin1|349710|estExt_Genemark1.C_Ctg_470079Tribonema minus UTEX_B_3156 polypeptideContig_47 604919..606619 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6257_1exon_6257_1Tribonema minus UTEX_B_3156 exonContig_47 604860..605126 +
exon_6257_2exon_6257_2Tribonema minus UTEX_B_3156 exonContig_47 605661..605774 +
exon_6257_3exon_6257_3Tribonema minus UTEX_B_3156 exonContig_47 606417..607019 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6257UTR5_6257Tribonema minus UTEX_B_3156 five_prime_UTRContig_47 604860..604918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6257CDS_6257Tribonema minus UTEX_B_3156 CDSContig_47 604919..605126 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6257UTR3_6257Tribonema minus UTEX_B_3156 three_prime_UTRContig_47 606620..607019 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6257 ID=mRNA_6257|Name=jgi.p|Trimin1|349710|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_47:604860..607019+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGCAATCATCCTTCAGTGAGCATATGCATGCTGCAGGCGCAGTTGATT
TGAGCCACCATGGCAGATGATAGCGATGAGGACAACCCGCTGCCGCGATG
GCTGGAGGGCGACTCTCTGGCACCGCCATGCCAGGCCGGATACGACGTGG
TACAAGCATTGCTGGAGTTCGCTGGGGTGACAGCGAAGGATATTGTCTAT
GATCTGGGCTGTGGCGATGGGCGCTTCTGCACAGAGGCCGCTGAGAAGTT
CGGCGCGAGGTCATGCGGCATTGAAATCGAGGAGGACCTGGTGCAGTCGT
TCAGAGCCGCTGTAGAGGCGAAAGGATTGCAGCAACGTGTGCGCGTGGTA
CACGGCGACCTGCTGGAGCAGGACCTATCGGATGCCACCATCATCGTCAT
GTACCTGCTGCCTGAGGCCCTGGCCCTGCTCGAGCCAAAGCTCATCCGTG
AGCTGTCCCGTGGCTGCGTCGTGGTGTGCAACACCTGGGGCCTCAAGAGC
CTCGTGCCTGTCAGGCAGGCGGCAGTTGGGCCCTTCTCGCAGACCAACCT
GCTGATGTACACGCGCGACAGCTTGCCACCATGACTATACGGCTAGTCTT
CAGAGAGCTGATATGTGGCTGGTGGCCAGTCTGGTTGGGGTCAGGGGCAC
GGGAGTGGTGGCAAGCTGACTCTGTTGAAGGCACGCAAAGCAACGCAGGG
CGTTGTCAGTGTGGCTACAGAGAAACTACATGCGAGTTGGTGCTTCACGC
GCAGTATATGCGCATAAGCGCAGGTGACTCTCCCTCCCTGACGCTCACTG
CAAATGGAGCGCAGCCTCAGGCACACGCATGTTGTTGTCACAGCTGGGCA
GGCAGTGATGTGCTCTCATGCACCAACTTGAACTTGAAGATGCAGCTCGA
TCTACCCTGCAGGCTAGGGTATGGCAGGGTATTTGAAGGTGCAGCGTCAG
TTCATTCCAGTCAATGCATCAGACATTGTTTCAA
back to top

protein sequence of jgi.p|Trimin1|349710

>Trimin1|349710|estExt_Genemark1.C_Ctg_470079 ID=Trimin1|349710|estExt_Genemark1.C_Ctg_470079|Name=jgi.p|Trimin1|349710|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MADDSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLG
CGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGD
LLEQDLSDATIIVMYLLPEALALLEPKLIRELSRGCVVVCNTWGLKSLVP
VRQAAVGPFSQTNLLMYTRDSLPP*
back to top

mRNA from alignment at Contig_47:604860..607019+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6257 ID=mRNA_6257|Name=jgi.p|Trimin1|349710|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2160bp|location=Sequence derived from alignment at Contig_47:604860..607019+ (Tribonema minus UTEX_B_3156 )
CAGGCAATCATCCTTCAGTGAGCATATGCATGCTGCAGGCGCAGTTGATT TGAGCCACCATGGCAGATGATAGCGATGAGGACAACCCGCTGCCGCGATG GCTGGAGGGCGACTCTCTGGCACCGCCATGCCAGGCCGGATACGACGTGG TACAAGCATTGCTGGAGTTCGCTGGGGTGACAGCGAAGGATATTGTCTAT GATCTGGGCTGTGGCGATGGGCGCTTCTGCACAGAGGCCGCTGAGAAGTT CGGCGCGAGGTCATGCGGTAAGTAAATCAGTTTGCCGTGATTTGTTTCGT ATTTCTATTTCGTGTAATATAGTGAAGGACATCCACTGGAAATACGGACA AGTGTGCTCGATTGGCTCTCTGGTTTTTGTTGGAGGTGCCACGCATCCTG GAGTTTCAGCTGCCACCAAACCACACCTGAGCAGTGTGTCGTGGTCCAAC TCGTGGAGAGCAGTTGTTTGTGTTGAGCTCTGCGTTGAGATGCGCGAGAT CACCATTTCTGCCACTACATGCATATCGCAGTAAATTTTCTTACGATCCA GAAGTGCACAATGGTCGCAGGCGCTCATGACCCTCATGCTGCTATCTGTG TGCAGCTCGTGCTATGAGCAGTGGTGCTGCTGTACTCCATGGTTGCCCTC TGCATGAGTTAAAGTGTGCCATTGTATGTCAGTCAGATTTGCGCGGCAAT TATCGCGATTGAGCGCCACTGGATTGCTGTTGACCATTTTGTTCTTAGCA GGGCCTTTAACAATCAGCGTGATCAAAGTGCGCGTTGCTGTTATGCTACA GGCATTGAAATCGAGGAGGACCTGGTGCAGTCGTTCAGAGCCGCTGTAGA GGCGAAAGGATTGCAGCAACGTGTGCGCGTGGTACACGGCGACCTGCTGG AGCAGGACCTATCGGGTAGGTACAGACGGGCACCCCCCCCCCTCTAGTGG GCAGCACACGCCGGACTGATGGCATGCCCAACATGTGATTATCATGTCTA CAAGTATGACACGTGTTACCTTTTGAAGTGGTTGCAATGAGCTCGAAGTA TATGTGCGCAGTGTATGTGTGACGCGCAAGCGACCTGTAGTGTAGCATTG GGTACATATGTATCAGCAGCGTTGATCACCGGGCTTCACCGAAGTCTGCA CTCCTGGTGATCGTGCATATGACAACTTGACTGCACCACAATAGAGCGCG GTTGTACAGCTGGCAACTAGCGAAGCGAGCACAGTTTGTGCTCCAGACTT GCGCACCATAGTATAGGCACTTGGCTCATCGCTGTGTAGCACCCTGACCT TGAGCACTTCAATTTGGCGAGATGCTGCGGGCCATGTGTATACAATGTGT CAATAGGAACATCACACGGTATGAGGCGCCGTTGCCATCACTGCCTTGTA AGGATGGAACTGATGATGAAAGCTCGACCATTATTCGCAAACTCTTGGTG GTTTTTCTATGACTGCATGAGACTCAGTTGCGTGCACATGAAAGCACTTA CACGGTGCCTTTCAGCTCTTGGAACTGACACACTCTGCTTCTCTTGCGCC ACTGCAGATGCCACCATCATCGTCATGTACCTGCTGCCTGAGGCCCTGGC CCTGCTCGAGCCAAAGCTCATCCGTGAGCTGTCCCGTGGCTGCGTCGTGG TGTGCAACACCTGGGGCCTCAAGAGCCTCGTGCCTGTCAGGCAGGCGGCA GTTGGGCCCTTCTCGCAGACCAACCTGCTGATGTACACGCGCGACAGCTT GCCACCATGACTATACGGCTAGTCTTCAGAGAGCTGATATGTGGCTGGTG GCCAGTCTGGTTGGGGTCAGGGGCACGGGAGTGGTGGCAAGCTGACTCTG TTGAAGGCACGCAAAGCAACGCAGGGCGTTGTCAGTGTGGCTACAGAGAA ACTACATGCGAGTTGGTGCTTCACGCGCAGTATATGCGCATAAGCGCAGG TGACTCTCCCTCCCTGACGCTCACTGCAAATGGAGCGCAGCCTCAGGCAC ACGCATGTTGTTGTCACAGCTGGGCAGGCAGTGATGTGCTCTCATGCACC AACTTGAACTTGAAGATGCAGCTCGATCTACCCTGCAGGCTAGGGTATGG CAGGGTATTTGAAGGTGCAGCGTCAGTTCATTCCAGTCAATGCATCAGAC ATTGTTTCAA
back to top

Coding sequence (CDS) from alignment at Contig_47:604860..607019+

>mRNA_6257 ID=mRNA_6257|Name=jgi.p|Trimin1|349710|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_47:604860..607019+ (Tribonema minus UTEX_B_3156 )
ATGGCAGATGATAGCGATGAGGACAACCCGCTGCCGCGATGGCTGGAGGG
CGACTCTCTGGCACCGCCATGCCAGGCCGGATACGACGTGGTACAAGCAT
TGCTGGAGTTCGCTGGGGTGACAGCGAAGGATATTGTCTATGATCTGGGC
TGTGGCGATGGGCGCTTCTGCACAGAGGCCGCTGAGAAGTTCGGCGCGAG
GTCATGCGGCATTGAAATCGAGGAGGACCTGGTGCAGTCGTTCAGAGCCG
CTGTAGAGGCGAAAGGATTGCAGCAACGTGTGCGCGTGGTACACGGCGAC
CTGCTGGAGCAGGACCTATCGGATGCCACCATCATCGTCATGTACCTGCT
GCCTGAGGCCCTGGCCCTGCTCGAGCCAAAGCTCATCCGTGAGCTGTCCC
GTGGCTGCGTCGTGGTGTGCAACACCTGGGGCCTCAAGAGCCTCGTGCCT
GTCAGGCAGGCGGCAGTTGGGCCCTTCTCGCAGACCAACCTGCTGATGTA
CACGCGCGACAGCTTGCCACCATGA
back to top