mRNA_6237 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349700
Unique NamemRNA_6237
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A835YS68_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS68_9STRA)

HSP 1 Score: 456 bits (1173), Expect = 5.920e-160
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 3
Query:   81 MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGDTQQ 791
            MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGDTQQ
Sbjct:    1 MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGDTQQ 237          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A835YMP0_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP0_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.590e-74
Identity = 143/261 (54.79%), Postives = 177/261 (67.82%), Query Frame = 3
Query:    3 AVGTAIIVGTGTAATACWITKGGPEVMVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFML-GIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGD 782
            AVGTA+IVG GTAA A  IT G     VA VWA  + AM+ACLSHVC AHFNPA+S+A+K+L P +LSWR +G    SQ LGA  G+  TL AF+ P+AA E ++G +R  F  +RSA+ LA FYPNPNA  Y +L G GA +PG A A A E  G A LAFV FSL HPR++   G      K LL GLT+  +++V+ PITMAGLNPARDI AR++    GWG  A P  G   S++VYTVAP++GA+LGG +A  LGD
Sbjct:    4 AVGTAVIVGVGTAAGAVAITSGA-AFNVAAVWAWTITAMIACLSHVCGAHFNPAISIASKVLQPRSLSWRTVGLYCASQTLGAGAGSLFTLSAFAAPIAALEASQGALRAGFGGRRSAAILALFYPNPNALDYVILNGQGAPFPGMAAAAALEVAGTALLAFVAFSLGHPRSKVTQG-----AKPLLIGLTVASIITVLGPITMAGLNPARDIGARVIAYFGGWGSMALPHNGIIGSIVVYTVAPIVGAILGGKLAHRLGD 258          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A6N9GML6_9CHLR (Aquaporin family protein n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N9GML6_9CHLR)

HSP 1 Score: 126 bits (317), Expect = 2.690e-30
Identity = 88/224 (39.29%), Postives = 112/224 (50.00%), Query Frame = 3
Query:   84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755
            VA VW   V   +     V  AH NPA+SL+  +   D     RL     +QL+GA I     LI F+P +  FET   +VRG   SQRSA A   ++PNP      +  +         AFA EA G A LAFV F+L   RN G+  +G +       G T+  L+S+ APIT  G NPARD   R++   AGWG  A P  GP     VY + PL+GA LG
Sbjct:   53 VAAVWGFGVTLAIYVSGAVSGAHLNPAVSLSFAIFRRDQFPLNRLFAYWAAQLIGAVIAGVVVLILFNPFIDRFETENDIVRGEAGSQRSAMAFGEYFPNPGMFDSAIFSVSP-----LHAFAVEAFGTAILAFVIFALTERRNAGIPTNGMV---PFFIGFTVAALISLFAPITQGGWNPARDFGPRIVSWLAGWGDIAIP--GPEGGFWVYILGPLVGAPLG 266          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A0L0FW34_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FW34_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 4.800e-30
Identity = 83/217 (38.25%), Postives = 119/217 (54.84%), Query Frame = 3
Query:  129 LSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVA-ICL 776
            + HV  AH NP++S A  L+      WRR G   L+Q +GA +G+      FS  +A +E    +VRG   S+R+A     ++PNP ++      IG G     +AF  E +G A LAFV FS+  P N  +  + A     L  G T+  ++S++AP+T AGLNPARD + RLL    GWG  A P  GP     +Y +AP+LGA +GG +A +C+
Sbjct:    7 VGHVSGAHLNPSISFAFALIDHKDFGWRRFGYYVLAQFVGAFLGSLLVWSLFSGAVAHYEGVNNMVRGQPGSERTAMMFGEYFPNPASYPNQNEVIGIG-----QAFWAEMLGTAFLAFVIFSVTAPCNNVIPPNFA----PLFIGFTVSIIISLIAPLTQAGLNPARDFSPRLLALILGWGDIAIP--GPRNGFWIYLLAPMLGAPIGGFLANVCI 212          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A1X7VQ25_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VQ25_AMPQE)

HSP 1 Score: 125 bits (314), Expect = 1.870e-29
Identity = 84/220 (38.18%), Postives = 111/220 (50.45%), Query Frame = 3
Query:  108 VAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVA 767
            VA  +   +H   AH NPA+SLA  ++      W RLG   L+Q LG+        IA+   + AFE AR + RG   SQ SA A   ++PNP     F      G      AF  E  G   L FV FS+ HP N  ++ +   G+   + GLT+  L+SV  P+TMAGLNPARD   R++   AGWG  A P  GP     +Y V P +G +LGG  +
Sbjct:  116 VAISICISAHFSDAHLNPAVSLAFAVIRFKKFHWFRLGPYILAQFLGSLFAGLTVFIAYRGSINAFEDARNITRGEPGSQLSAMAFGEYFPNP---AVFNPNEFTGITSVFEAFLIETWGTFILVFVIFSVTHPSNAIISNN--KGLIPFVIGLTVAILISVYGPLTMAGLNPARDFGPRVIAAIAGWGTIAIP--GPRNGFWLYIVGPFIGGVLGGGAS 328          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A507DB14_9FUNG (Aquaporin n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DB14_9FUNG)

HSP 1 Score: 124 bits (310), Expect = 2.620e-29
Identity = 88/224 (39.29%), Postives = 121/224 (54.02%), Query Frame = 3
Query:   84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755
            VA VW   +A  +   SH+  AH NPA++LA  L   +   W ++    L+Q+LGA +  AA L  +   +A FE    + RG+  S RSA A   ++PNP A +   L           AF  E +G A LAF+ FSL   RN+ +AG  A      L G T+  L+SV+AP+T A LNPARDI  R++   AGWG  AF   GP  + +VY V P++GA +G
Sbjct:   73 VATVWGFGLALAIYVSSHISGAHLNPAMTLA--LAVWNEFPWNKVPGYILAQVLGALVAGAANLALYGSVIADFELQHNITRGSPESIRSAMAFGEYFPNPAAFSNPNL------VSTQVAFIAEVLGTAILAFMIFSLTDRRNKTLAGSEA--AIPFLIGFTVAVLISVIAPLTQACLNPARDIGPRIIAYYAGWGNVAF---GPSSTFIVYYVGPIVGAQIG 283          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A1X6NYN3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYN3_PORUM)

HSP 1 Score: 122 bits (305), Expect = 5.670e-29
Identity = 88/246 (35.77%), Postives = 116/246 (47.15%), Query Frame = 3
Query:   18 IIVGTGTAATACWITKGGPEVMVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755
            ++ G G   TA           VA VW   VA  + C + V  AH NPA+SLA  L  PD   W++L     +Q  G  +G A  L  F P  AA+E   G+VRG   S  +A+A   ++PNP     F   +       A A A EA G   L FV  ++   R + M G   +       G T+  L+S+ AP+T AG NPARD   R++   AGWG  A P  GP     V+ V P +GA LG
Sbjct:    3 VVFGVGVVCTATLTDSAAGLWQVATVWGFGVALAILCTASVSGAHLNPAVSLAFALFRPDDFPWKKLLPYWAAQYAGGVLGGALNLALFGPLFAAYEAREGIVRGEGGSVVTAAAFGEYFPNPG----FAKTVPPSAVSPAHALAVEAWGTGVLMFVILAIIDGRQKLMGGKEMI---PFYIGFTVAVLISLYAPLTQAGWNPARDFGPRIVAALAGWGSIAIP--GPRNGFWVFIVGPKIGAPLG 239          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A1E7EUJ1_9STRA (Major intrinsic protein family transmembrane channel n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUJ1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.200e-28
Identity = 80/228 (35.09%), Postives = 121/228 (53.07%), Query Frame = 3
Query:   84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPD-ALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSV 764
            VA VW   V   +   + +  AH NPA+S+A  ++ P  + +WR++   ++SQL GA +G+   L+ +S  +AAFET  G++R   +   SA A   ++ +P                   AF  E++G   LAFV F+L HP+N  M      G    L GLT+G L+S++AP+T AG NPARD   R++   AGW   AF       S  VY +AP++GA +G ++
Sbjct:  133 VASVWIIAVTIAICATASISGAHLNPAISIAFAIVRPSKSFNWRKVIPYSISQLGGAILGSWLNLVLYSSTIAAFETKNGIIRSGVSGLASARAFGEYFVSPVTTV--------------TAFLAESIGTCILAFVIFALTHPKNDTMKS----GFVPPLIGLTVGALISIIAPLTQAGFNPARDFGPRIVAWFAGWKTVAFT------SSWVYIIAPIVGASIGAAL 336          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A6B0Z1Y7_9CHLR (Aquaporin (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0Z1Y7_9CHLR)

HSP 1 Score: 119 bits (298), Expect = 2.410e-28
Identity = 83/199 (41.71%), Postives = 103/199 (51.76%), Query Frame = 3
Query:  159 PALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755
            PA+SLA  +   D     RL     +QL+GA I     LI F+P +  FE   G+VRG   SQRSA A   ++PNP      M    A       AFA EA G A LAFV F+L   RN G+  +G +       G T+  L+S+ APIT AG NPARD   R++   AGWG  A P  GP     VY + PL+GA LG
Sbjct:    1 PAVSLAFAIFRRDQFPVNRLFAYWGAQLIGAVIAGVVVLILFNPFIDRFEMENGIVRGELGSQRSAMAFGEYFPNPG-----MFDSAAFSVSPLHAFAVEAFGTAILAFVIFALTERRNAGIPTNGMV---PFFIGFTVAALISLFAPITQAGWNPARDFGPRIVSWLAGWGDIAIP--GPEGGFWVYILGPLIGAPLG 189          
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A3L7Q9X2_9BACT (Aquaporin family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7Q9X2_9BACT)

HSP 1 Score: 119 bits (299), Expect = 8.790e-28
Identity = 88/241 (36.51%), Postives = 119/241 (49.38%), Query Frame = 3
Query:   84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGA--------------GYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSV 764
            VA VW   +   +  +  +  AH NPA+++A  L       W+ +G     QL GA + A    I FSP LAA E  +G+ RG   S+ +A     ++P P +     LG G               G PG  +AF  E +G A LAFV F++   RN G     A G   +  GLT+  L+SV+AP+T A  NPARD+  RL    AGWG  A P       L VY VAP+ G+L+GG+V
Sbjct:   46 VAIVWGVAIMLAIYSIGSISGAHINPAMTIA--LAVHRGFPWKNVGPYIAGQLTGAILAAGTLFILFSPHLAALEKLKGVERGQPGSEMTAMCYGEYFPAPGS-----LGSGTEPYSAEKHAELKAKGNPG--QAFLAELLGTAVLAFVVFAVTDDRNSGRP---AAGQAPIFIGLTVAVLISVIAPLTQACFNPARDLGPRLFAYFAGWGAIALPGFTDLSWLTVYIVAPMAGSLVGGAV 274          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS68_9STRA5.920e-160100.00Aquaporin-like protein n=1 Tax=Tribonema minus Tax... [more]
A0A835YMP0_9STRA1.590e-7454.79Aquaporin-like protein n=1 Tax=Tribonema minus Tax... [more]
A0A6N9GML6_9CHLR2.690e-3039.29Aquaporin family protein n=3 Tax=Chloroflexi bacte... [more]
A0A0L0FW34_9EUKA4.800e-3038.25Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A1X7VQ25_AMPQE1.870e-2938.18Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A507DB14_9FUNG2.620e-2939.29Aquaporin n=2 Tax=Synchytrium endobioticum TaxID=2... [more]
A0A1X6NYN3_PORUM5.670e-2935.77Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1E7EUJ1_9STRA2.200e-2835.09Major intrinsic protein family transmembrane chann... [more]
A0A6B0Z1Y7_9CHLR2.410e-2841.71Aquaporin (Fragment) n=1 Tax=Chloroflexi bacterium... [more]
A0A3L7Q9X2_9BACT8.790e-2836.51Aquaporin family protein n=1 Tax=Planctomycetes ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:438356..441932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349700|estExt_Genemark1.C_Ctg_470061
DescriptionMajor intrinsic protein
COG categoryG
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG0580@1|root,KOG0224@2759|Eukaryota,3AM3T@33154|Opisthokonta,3BZ7A@33208|Metazoa
Evalue1.62e-31
Seed ortholog400682.PAC_15726441
Hectar predicted targeting categorysignal peptide
TranscriptId350022
TrackFilteredModels1
ProteinId349700
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349700gene_6237Tribonema minus UTEX_B_3156 geneContig_47 438356..441932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349700Trimin1|349700|estExt_Genemark1.C_Ctg_470061Tribonema minus UTEX_B_3156 polypeptideContig_47 438631..441130 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6237_5exon_6237_5Tribonema minus UTEX_B_3156 exonContig_47 438356..438793 -
exon_6237_4exon_6237_4Tribonema minus UTEX_B_3156 exonContig_47 439234..439313 -
exon_6237_3exon_6237_3Tribonema minus UTEX_B_3156 exonContig_47 440057..440438 -
exon_6237_2exon_6237_2Tribonema minus UTEX_B_3156 exonContig_47 441042..441171 -
exon_6237_1exon_6237_1Tribonema minus UTEX_B_3156 exonContig_47 441894..441932 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6237UTR3_6237Tribonema minus UTEX_B_3156 three_prime_UTRContig_47 438356..438630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6237CDS_6237Tribonema minus UTEX_B_3156 CDSContig_47 441042..441130 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6237UTR5_6237Tribonema minus UTEX_B_3156 five_prime_UTRContig_47 441894..441932 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6237 ID=mRNA_6237|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1069bp|location=Sequence derived from alignment at Contig_47:438356..441932- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCAGTCGGCACCGCCATCATTGTTGGCACCGGCACAGCTGCCACAGCG
TGCTGGATAACAAAGGGCGGACCGGAGGTGATGGTGGCGGGTGTGTGGGC
GGCAGTTGTAGCGGCCATGGTGGCGTGCCTGTCGCACGTGTGCCAGGCGC
ACTTCAATCCGGCTCTCAGCCTGGCCACGAAGCTTCTGACCCCCGACGCG
CTATCATGGCGGCGGCTCGGCCGCATCACCCTGAGCCAGCTGCTCGGCGC
AGCCATCGGCGCCGCAGCAACGCTCATCGCCTTCTCCCCCCCCCTCGCCG
CCTTCGAAACGGCACGGGGGCTCGTGCGTGGCAACTTCAACAGCCAGCGC
TCAGCGTCAGCGCTGGCCCCCTTCTACCCTAACCCCAACGCGCACACTTA
CTTCATGTTGGGGATTGGGGCGGGGTACCCCGGGGCGGCGCGCGCATTTG
CGACAGAGGCGGTGGGCGCGGCGGCGCTGGCGTTTGTGTGGTTCTCGCTG
CGGCACCCGCGGAACAGGGGGATGGCGGGGGACGGCGCGCTGGGGGTCAA
GGCTCTGCTGTTTGGGCTGACCATGGGGGGTCTGATGAGCGTCATGGCGC
CCATCACAATGGCGGGGCTCAATCCTGCAAGGGACATCGCCGCACGCCTG
CTGTGCTGCGCCGCCGGCTGGGGGCGCTACGCATTCCCCACGGGGGGTCC
CTTCTGCAGCTTGATGGTGTATACGGTGGCGCCGTTGCTGGGCGCACTGC
TCGGTGGCAGCGTGGCGATTTGCCTCGGGGATACACAGCAGTGAGAGAGC
GGACCGCAAGCGGGTGAAGTGGAGCACAGGCGCGGCAGACATCTGGTGCA
ACGACGGTGTCGTGTATGTGTATATCTGTGTGATGCAAGTGGTTCCGGTA
AATGTACATGCGTTGCATTGAGCGCGCACACAATCCATGAAAGAGAGGGC
TTTTCGCGCCCCACGAAATCAATACAAGTACATATACTGCTCGTTAGCAC
CGAGAGGTGCGGCAGCACTCGCGGTGGCGCTGATGGTGGCGAGGGTGCAT
CAGGCAGCAAGGGGATGGG
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protein sequence of jgi.p|Trimin1|349700

>Trimin1|349700|estExt_Genemark1.C_Ctg_470061 ID=Trimin1|349700|estExt_Genemark1.C_Ctg_470061|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=238bp
MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRIT
LSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYP
NPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAG
DGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRY
AFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGDTQQ*
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mRNA from alignment at Contig_47:438356..441932-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6237 ID=mRNA_6237|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3577bp|location=Sequence derived from alignment at Contig_47:438356..441932- (Tribonema minus UTEX_B_3156 )
AAGCAGTCGGCACCGCCATCATTGTTGGCACCGGCACAGGCAAGTCACAA TAACCTGTGCCCTGTTGGCAACGCATATGATCGAGGCACACTGAAGCTGG CATTGTTGTTGGTGCTGTGCGTGCTGCACTTATGACAAAAAATCAAAAGA TCGTAGAGCTCTAGGTGACAAGAAAAGGTTAGCCGCAAGTGCCTTCCACC AATAACCGTGGTCGCCGCTGCTGCAGCAATTGGCCACGAGTCAAACAGTA CCACCGTATCCACTAGCCGAAAAGACTTCTGTGTGCAAGCTTTTAGGTTC GAAGCACTAATAGTTGACCATGAGACTCTACTGTTGATGCTTGGCAAGCG CACGCTCCATGGAACGGTGACCTCGCATATTTTGAGGGGCACCAGTTTGT TGCTTGTGACTATTCTTTGCACCGGCACACATTTGTGAGCATTCCGAATG CTCATGGTTTAGGCTTTGCACCTGTGCCACCAACTAGAATGACGTGGCAC TGATCTGAACTGTCTACTTTCAGCAGAACCATGGAAGTATGATAGCAGGC CGGGAAGAATGTAGAAGCCCACCGTCGCTTTACTGTCCTGCGGCAGCTGC TGCCCCGTACAGCATCATCAAGTGTTATGGTGCATGAAGCTGCCGATGCT ACCGCTGCTGTGTGTGCTAAGCAACAAAGTGTATGTTCCAGCAGCTGCTC TGCAGCGCGTTTCTTTCCTGGACCTGTGTGTATGCCGCTGGTGCATGTGT GTATGCCGCAGCTGCCACAGCGTGCTGGATAACAAAGGGCGGACCGGAGG TGATGGTGGCGGGTGTGTGGGCGGCAGTTGTAGCGGCCATGGTGGCGTGC CTGTCGCACGTGTGCCAGGCGCACTTCAATCCGGCTCTCAGGTGACCGCG AACGATTTCTCCAAAACGGCATTTTGTGTATATCTCAAATTCAAATCTTG TTTTTGGCATCGTAAAGCCGTATTTAGGTTATCAATACCACATTGGACGC TTTCGACCGCTGCATTTTCGTGAAATGAGGCACTTCACATCGCCCAATGA CACGTGCACCGATGCATGCGTAGACGCCGTGCATCAGTCGTCAGTGTTGA AATGTACGCTGGCGTTGCAGTGCTCAGACCCAAATCCTGGTCCTGGCCGT CCGGAGTGTGTTGACTTCAATTTTCGTTGTTGAAATTCTCGCTTAGGCTT GAAGATACCTACTTATATTTGTCTTTCGCTTGCAAGGCGGAAACCTTAAG AATGCTTTGAAGTCTGCAAGACTTGCAGCTCTAAGACGTATGCTTGCGCA GTGCGTGTGCTCGCTGCGCATCTGTAAGCTCAGCTGTAATGCAAGCGCTA CCCACTTTCAGCCCGGCCAGCTACAGCTAACCCCTCGGAGGACTTCGAGT TGTCCGCCGTGGCCCCTACACCCTGGCACAGTACCAGTACGTAAAACTCA CAGTGCCCCCCCTCCCTCCCCCCCCTCGCCCCCCCCCCCCCCAGCCTGGC CACGAAGCTTCTGACCCCCGACGCGCTATCATGGCGGCGGCTCGGCCGCA TCACCCTGAGCCAGCTGCTCGGCGCAGCCATCGGCGCCGCAGCAACGCTC ATCGCCTTCTCCCCCCCCCTCGCCGCCTTCGAAACGGCACGGGGGCTCGT GCGTGGCAACTTCAACAGCCAGCGCTCAGCGTCAGCGCTGGCCCCCTTCT ACCCTAACCCCAACGCGCACACTTACTTCATGTTGGGGATTGGGGCGGGG TACCCCGGGGCGGCGCGCGCATTTGCGACAGAGGCGGTGGGCGCGGCGGC GCTGGCGTTTGTGTGGTTCTCGCTGCGGCACCCGCGGAACAGGGGGATGG CGGGGGACGGCGCGCTGGGGGTCAAGGTACGTGAAGTTGAAGTTGAAGTT TGTCCGTTCACTTTGAGAGTCAGGGTCGTTTTTGCTGCGGCAGCCGCAGA ACCGGGTAATGGAAGGGGTGGCACGATGGGGGTCAATGTACGTGCACTTG AAGTTGAAGTTTGCCTGTGCTCTCTCTGTTCAAAAGTTTGAAGCAGGGTG GATCTTGCTGCGGCAGCCGCGTAACCGGGGGGATGGAGGGGGGCGGCGCA TTGAGGTACAAGGTACCAGCATGTCGATCGCATCAGGTCCTGAAGGGGCG CGAGTGAGCAAAGTTGAAGTAAAAGTACAGATCGCTTACTTCAAGAAAGG GTGGGGGGGCTCACTTGAGGCACTTGCGAAGAGGGGGTAGGAGGGGGACG GCGCGTTGGGGCTCAATCAAGGTAGTAGCAGTCCGTTGCATCTTAGCTAG TAGCTTCAACGGGCCACTCCAGAAGCGTGGTGGGTCACTCTTGAACAAGA GACAGGAAGTACTGTGAACTAACTTCCGTTTGAGGGCGGGAAACCTATGA TATGTGTGCTCTTGTACTTGCGCAATGCGTGTGCTCACAGCACATCTCTA AGCTCAGTTGAAAGCGAGCGCTAGGCCAGCTAGAGATAGGCCTCCAGGCG GACTTCGTCCACTGTGCCCCCTGCATGTAGGCCCAAGCTCAAATAATATT CTATACCTGTACGACCTCCCACGTAGCGTCACAAAGCTGTCCATTTGTGT GCCACCGCCCCCTCTGCAGGCTCTGCTGTTTGGGCTGACCATGGGGGGTC TGATGAGCGTCATGGCGCCCATCACAATGGCGGGGCTCAATCCTGCAAGG TTCGCCCCCTTCTTTGAGCCCAAACGTTTGATGAATGCGCCCAATGTGTG GGTCAATGTCGTGGTTTCGCGGCGCAAACGTGCTGCATTGGACCGTGTGT ACTTTGTTTGCTTCCTCGTGTACTCATGTGCTACATGGCGTCCGTGGTTC TCATGTAGGTATGTGCAGGGTGTTTTTTTGAAGAATTGGGCACCACGTCT ATGTCACATTGCCGAGGCTCGCAGTTCTGAGGTATACTTCAACTATACAC TGCAGAAAAGGTGTGTATCACTTGTTTCCTGAAATATCAGTAAATGCTCA GCGCTATGTCAGGGTTGGGTATATAAATCACGCATCAGCATTAGCAAGCT CTGCACCCCAGTGCTCAGCAGCAGTGCGCACCTCAGCGCTCAGCGCTCAA CTGAGGTCATGACCGAACAACGCGTGTGCTGCGCCGCAGGGACATCGCCG CACGCCTGCTGTGCTGCGCCGCCGGCTGGGGGCGCTACGCATTCCCCACG GGGGGTCCCTTCTGCAGCTTGATGGTGTATACGGTGGCGCCGTTGCTGGG CGCACTGCTCGGTGGCAGCGTGGCGATTTGCCTCGGGGATACACAGCAGT GAGAGAGCGGACCGCAAGCGGGTGAAGTGGAGCACAGGCGCGGCAGACAT CTGGTGCAACGACGGTGTCGTGTATGTGTATATCTGTGTGATGCAAGTGG TTCCGGTAAATGTACATGCGTTGCATTGAGCGCGCACACAATCCATGAAA GAGAGGGCTTTTCGCGCCCCACGAAATCAATACAAGTACATATACTGCTC GTTAGCACCGAGAGGTGCGGCAGCACTCGCGGTGGCGCTGATGGTGGCGA GGGTGCATCAGGCAGCAAGGGGATGGG
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Coding sequence (CDS) from alignment at Contig_47:438356..441932-

>mRNA_6237 ID=mRNA_6237|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=714bp|location=Sequence derived from alignment at Contig_47:438356..441932- (Tribonema minus UTEX_B_3156 )
ATGGTGGCGGGTGTGTGGGCGGCAGTTGTAGCGGCCATGGTGGCGTGCCT
GTCGCACGTGTGCCAGGCGCACTTCAATCCGGCTCTCAGCCTGGCCACGA
AGCTTCTGACCCCCGACGCGCTATCATGGCGGCGGCTCGGCCGCATCACC
CTGAGCCAGCTGCTCGGCGCAGCCATCGGCGCCGCAGCAACGCTCATCGC
CTTCTCCCCCCCCCTCGCCGCCTTCGAAACGGCACGGGGGCTCGTGCGTG
GCAACTTCAACAGCCAGCGCTCAGCGTCAGCGCTGGCCCCCTTCTACCCT
AACCCCAACGCGCACACTTACTTCATGTTGGGGATTGGGGCGGGGTACCC
CGGGGCGGCGCGCGCATTTGCGACAGAGGCGGTGGGCGCGGCGGCGCTGG
CGTTTGTGTGGTTCTCGCTGCGGCACCCGCGGAACAGGGGGATGGCGGGG
GACGGCGCGCTGGGGGTCAAGGCTCTGCTGTTTGGGCTGACCATGGGGGG
TCTGATGAGCGTCATGGCGCCCATCACAATGGCGGGGCTCAATCCTGCAA
GGGACATCGCCGCACGCCTGCTGTGCTGCGCCGCCGGCTGGGGGCGCTAC
GCATTCCCCACGGGGGGTCCCTTCTGCAGCTTGATGGTGTATACGGTGGC
GCCGTTGCTGGGCGCACTGCTCGGTGGCAGCGTGGCGATTTGCCTCGGGG
ATACACAGCAGTGA
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