mRNA_6237 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A835YS68_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS68_9STRA) HSP 1 Score: 456 bits (1173), Expect = 5.920e-160 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 3 Query: 81 MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGDTQQ 791 MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGDTQQ Sbjct: 1 MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGDTQQ 237
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A835YMP0_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP0_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.590e-74 Identity = 143/261 (54.79%), Postives = 177/261 (67.82%), Query Frame = 3 Query: 3 AVGTAIIVGTGTAATACWITKGGPEVMVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFML-GIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVAICLGD 782 AVGTA+IVG GTAA A IT G VA VWA + AM+ACLSHVC AHFNPA+S+A+K+L P +LSWR +G SQ LGA G+ TL AF+ P+AA E ++G +R F +RSA+ LA FYPNPNA Y +L G GA +PG A A A E G A LAFV FSL HPR++ G K LL GLT+ +++V+ PITMAGLNPARDI AR++ GWG A P G S++VYTVAP++GA+LGG +A LGD Sbjct: 4 AVGTAVIVGVGTAAGAVAITSGA-AFNVAAVWAWTITAMIACLSHVCGAHFNPAISIASKVLQPRSLSWRTVGLYCASQTLGAGAGSLFTLSAFAAPIAALEASQGALRAGFGGRRSAAILALFYPNPNALDYVILNGQGAPFPGMAAAAALEVAGTALLAFVAFSLGHPRSKVTQG-----AKPLLIGLTVASIITVLGPITMAGLNPARDIGARVIAYFGGWGSMALPHNGIIGSIVVYTVAPIVGAILGGKLAHRLGD 258
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A6N9GML6_9CHLR (Aquaporin family protein n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N9GML6_9CHLR) HSP 1 Score: 126 bits (317), Expect = 2.690e-30 Identity = 88/224 (39.29%), Postives = 112/224 (50.00%), Query Frame = 3 Query: 84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755 VA VW V + V AH NPA+SL+ + D RL +QL+GA I LI F+P + FET +VRG SQRSA A ++PNP + + AFA EA G A LAFV F+L RN G+ +G + G T+ L+S+ APIT G NPARD R++ AGWG A P GP VY + PL+GA LG Sbjct: 53 VAAVWGFGVTLAIYVSGAVSGAHLNPAVSLSFAIFRRDQFPLNRLFAYWAAQLIGAVIAGVVVLILFNPFIDRFETENDIVRGEAGSQRSAMAFGEYFPNPGMFDSAIFSVSP-----LHAFAVEAFGTAILAFVIFALTERRNAGIPTNGMV---PFFIGFTVAALISLFAPITQGGWNPARDFGPRIVSWLAGWGDIAIP--GPEGGFWVYILGPLVGAPLG 266
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A0L0FW34_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FW34_9EUKA) HSP 1 Score: 124 bits (311), Expect = 4.800e-30 Identity = 83/217 (38.25%), Postives = 119/217 (54.84%), Query Frame = 3 Query: 129 LSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVA-ICL 776 + HV AH NP++S A L+ WRR G L+Q +GA +G+ FS +A +E +VRG S+R+A ++PNP ++ IG G +AF E +G A LAFV FS+ P N + + A L G T+ ++S++AP+T AGLNPARD + RLL GWG A P GP +Y +AP+LGA +GG +A +C+ Sbjct: 7 VGHVSGAHLNPSISFAFALIDHKDFGWRRFGYYVLAQFVGAFLGSLLVWSLFSGAVAHYEGVNNMVRGQPGSERTAMMFGEYFPNPASYPNQNEVIGIG-----QAFWAEMLGTAFLAFVIFSVTAPCNNVIPPNFA----PLFIGFTVSIIISLIAPLTQAGLNPARDFSPRLLALILGWGDIAIP--GPRNGFWIYLLAPMLGAPIGGFLANVCI 212
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A1X7VQ25_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VQ25_AMPQE) HSP 1 Score: 125 bits (314), Expect = 1.870e-29 Identity = 84/220 (38.18%), Postives = 111/220 (50.45%), Query Frame = 3 Query: 108 VAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSVA 767 VA + +H AH NPA+SLA ++ W RLG L+Q LG+ IA+ + AFE AR + RG SQ SA A ++PNP F G AF E G L FV FS+ HP N ++ + G+ + GLT+ L+SV P+TMAGLNPARD R++ AGWG A P GP +Y V P +G +LGG + Sbjct: 116 VAISICISAHFSDAHLNPAVSLAFAVIRFKKFHWFRLGPYILAQFLGSLFAGLTVFIAYRGSINAFEDARNITRGEPGSQLSAMAFGEYFPNP---AVFNPNEFTGITSVFEAFLIETWGTFILVFVIFSVTHPSNAIISNN--KGLIPFVIGLTVAILISVYGPLTMAGLNPARDFGPRVIAAIAGWGTIAIP--GPRNGFWLYIVGPFIGGVLGGGAS 328
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A507DB14_9FUNG (Aquaporin n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DB14_9FUNG) HSP 1 Score: 124 bits (310), Expect = 2.620e-29 Identity = 88/224 (39.29%), Postives = 121/224 (54.02%), Query Frame = 3 Query: 84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755 VA VW +A + SH+ AH NPA++LA L + W ++ L+Q+LGA + AA L + +A FE + RG+ S RSA A ++PNP A + L AF E +G A LAF+ FSL RN+ +AG A L G T+ L+SV+AP+T A LNPARDI R++ AGWG AF GP + +VY V P++GA +G Sbjct: 73 VATVWGFGLALAIYVSSHISGAHLNPAMTLA--LAVWNEFPWNKVPGYILAQVLGALVAGAANLALYGSVIADFELQHNITRGSPESIRSAMAFGEYFPNPAAFSNPNL------VSTQVAFIAEVLGTAILAFMIFSLTDRRNKTLAGSEA--AIPFLIGFTVAVLISVIAPLTQACLNPARDIGPRIIAYYAGWGNVAF---GPSSTFIVYYVGPIVGAQIG 283
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A1X6NYN3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYN3_PORUM) HSP 1 Score: 122 bits (305), Expect = 5.670e-29 Identity = 88/246 (35.77%), Postives = 116/246 (47.15%), Query Frame = 3 Query: 18 IIVGTGTAATACWITKGGPEVMVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755 ++ G G TA VA VW VA + C + V AH NPA+SLA L PD W++L +Q G +G A L F P AA+E G+VRG S +A+A ++PNP F + A A A EA G L FV ++ R + M G + G T+ L+S+ AP+T AG NPARD R++ AGWG A P GP V+ V P +GA LG Sbjct: 3 VVFGVGVVCTATLTDSAAGLWQVATVWGFGVALAILCTASVSGAHLNPAVSLAFALFRPDDFPWKKLLPYWAAQYAGGVLGGALNLALFGPLFAAYEAREGIVRGEGGSVVTAAAFGEYFPNPG----FAKTVPPSAVSPAHALAVEAWGTGVLMFVILAIIDGRQKLMGGKEMI---PFYIGFTVAVLISLYAPLTQAGWNPARDFGPRIVAALAGWGSIAIP--GPRNGFWVFIVGPKIGAPLG 239
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A1E7EUJ1_9STRA (Major intrinsic protein family transmembrane channel n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUJ1_9STRA) HSP 1 Score: 122 bits (307), Expect = 2.200e-28 Identity = 80/228 (35.09%), Postives = 121/228 (53.07%), Query Frame = 3 Query: 84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPD-ALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSV 764 VA VW V + + + AH NPA+S+A ++ P + +WR++ ++SQL GA +G+ L+ +S +AAFET G++R + SA A ++ +P AF E++G LAFV F+L HP+N M G L GLT+G L+S++AP+T AG NPARD R++ AGW AF S VY +AP++GA +G ++ Sbjct: 133 VASVWIIAVTIAICATASISGAHLNPAISIAFAIVRPSKSFNWRKVIPYSISQLGGAILGSWLNLVLYSSTIAAFETKNGIIRSGVSGLASARAFGEYFVSPVTTV--------------TAFLAESIGTCILAFVIFALTHPKNDTMKS----GFVPPLIGLTVGALISIIAPLTQAGFNPARDFGPRIVAWFAGWKTVAFT------SSWVYIIAPIVGASIGAAL 336
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A6B0Z1Y7_9CHLR (Aquaporin (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0Z1Y7_9CHLR) HSP 1 Score: 119 bits (298), Expect = 2.410e-28 Identity = 83/199 (41.71%), Postives = 103/199 (51.76%), Query Frame = 3 Query: 159 PALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGAGYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLG 755 PA+SLA + D RL +QL+GA I LI F+P + FE G+VRG SQRSA A ++PNP M A AFA EA G A LAFV F+L RN G+ +G + G T+ L+S+ APIT AG NPARD R++ AGWG A P GP VY + PL+GA LG Sbjct: 1 PAVSLAFAIFRRDQFPVNRLFAYWGAQLIGAVIAGVVVLILFNPFIDRFEMENGIVRGELGSQRSAMAFGEYFPNPG-----MFDSAAFSVSPLHAFAVEAFGTAILAFVIFALTERRNAGIPTNGMV---PFFIGFTVAALISLFAPITQAGWNPARDFGPRIVSWLAGWGDIAIP--GPEGGFWVYILGPLIGAPLG 189
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Match: A0A3L7Q9X2_9BACT (Aquaporin family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7Q9X2_9BACT) HSP 1 Score: 119 bits (299), Expect = 8.790e-28 Identity = 88/241 (36.51%), Postives = 119/241 (49.38%), Query Frame = 3 Query: 84 VAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITLSQLLGAAIGAAATLIAFSPPLAAFETARGLVRGNFNSQRSASALAPFYPNPNAHTYFMLGIGA--------------GYPGAARAFATEAVGAAALAFVWFSLRHPRNRGMAGDGALGVKALLFGLTMGGLMSVMAPITMAGLNPARDIAARLLCCAAGWGRYAFPTGGPFCSLMVYTVAPLLGALLGGSV 764 VA VW + + + + AH NPA+++A L W+ +G QL GA + A I FSP LAA E +G+ RG S+ +A ++P P + LG G G PG +AF E +G A LAFV F++ RN G A G + GLT+ L+SV+AP+T A NPARD+ RL AGWG A P L VY VAP+ G+L+GG+V Sbjct: 46 VAIVWGVAIMLAIYSIGSISGAHINPAMTIA--LAVHRGFPWKNVGPYIAGQLTGAILAAGTLFILFSPHLAALEKLKGVERGQPGSEMTAMCYGEYFPAPGS-----LGSGTEPYSAEKHAELKAKGNPG--QAFLAELLGTAVLAFVVFAVTDDRNSGRP---AAGQAPIFIGLTVAVLISVIAPLTQACFNPARDLGPRLFAYFAGWGAIALPGFTDLSWLTVYIVAPMAGSLVGGAV 274 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349700 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6237 ID=mRNA_6237|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1069bp|location=Sequence derived from alignment at Contig_47:438356..441932- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGCAGTCGGCACCGCCATCATTGTTGGCACCGGCACAGCTGCCACAGCGback to top protein sequence of jgi.p|Trimin1|349700 >Trimin1|349700|estExt_Genemark1.C_Ctg_470061 ID=Trimin1|349700|estExt_Genemark1.C_Ctg_470061|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=238bp MVAGVWAAVVAAMVACLSHVCQAHFNPALSLATKLLTPDALSWRRLGRITback to top mRNA from alignment at Contig_47:438356..441932- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6237 ID=mRNA_6237|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3577bp|location=Sequence derived from alignment at Contig_47:438356..441932- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_47:438356..441932- >mRNA_6237 ID=mRNA_6237|Name=jgi.p|Trimin1|349700|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=714bp|location=Sequence derived from alignment at Contig_47:438356..441932- (Tribonema minus UTEX_B_3156 )back to top |