mRNA_6193 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145800
Unique NamemRNA_6193
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: A0A835YR85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR85_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.770e-48
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKHADGLSKGFD 225
            RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKHADGLSKGFD
Sbjct:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKHADGLSKGFD 75
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: D7FKE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE9_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 4.070e-21
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFL 189
            RFVW   LH  FV A+FDVGLK ASP++LL+MMP   GLT+EH+KSHLQK+RLHR +SREEFL
Sbjct:  133 RFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFL 195
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.760e-21
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFL 189
            RFVWPD LH  FV AIFDVGLK ASP+ +L+MM + + LT +H+KSHLQK+RLHR+++REEFL
Sbjct:   78 RFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFL 140
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.010e-21
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKHADGLSK 216
            RF WPD LH  FV AIFDVGLK +SP  +L+ MP  + +T+E VKSHLQK+R+HR KS++EF++ + +GL K
Sbjct:   85 RFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKKEFMSSYDEGLKK 156
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.080e-20
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFL 189
            RFVWPD LH  FV AIFDVGLK ASP+ +++MM + + LT +H+KSHLQK+RLHR+++REEFL
Sbjct:   57 RFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFL 119
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: T0Q2V8_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q2V8_SAPDV)

HSP 1 Score: 90.5 bits (223), Expect = 1.570e-19
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDP---QGLTTEHVKSHLQKFRLHRDKSREEFLTKHADGLS 213
            RF+WPD LH  FV A+FDVGLK ASP+ LL +M +P    GLTTEH+KSHLQK+RL+ D+SR EFL  + + +S
Sbjct:   74 RFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPACSNGLTTEHLKSHLQKYRLNYDRSRVEFLKFYDESVS 147
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: A0A397B8B0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B8B0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.750e-19
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDP---QGLTTEHVKSHLQKFRLHRDKSREEFL 189
            RF+WPD LH  FV A+FDVGLK ASP+ LL +M  P    GLTTEH+KSHLQK+RL+ D+SR EFL
Sbjct:  117 RFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGTPACTNGLTTEHLKSHLQKYRLNYDRSRVEFL 182
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BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: A0A1V9Y769_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y769_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.750e-19
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDP---QGLTTEHVKSHLQKFRLHRDKSREEFL 189
            RF+WPD LH  FV A+FDVGLK ASP+ LL +M +P    GLTTEH+KSHLQK+RL+ D+SR EFL
Sbjct:   66 RFIWPDELHRLFVAAVFDVGLKNASPKALLTLMGNPATSSGLTTEHLKSHLQKYRLNYDRSRVEFL 131
[Close]
BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: A0A024TY79_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY79_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.040e-19
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDP---QGLTTEHVKSHLQKFRLHRDKSREEFLTKHADGLS 213
            RF+WPD LH  FV A+FDVGLK ASP+ LL +M +P    GLTTEH+KSHLQK+RL+ D+SR EFL    + +S
Sbjct:   73 RFIWPDELHRLFVAAVFDVGLKNASPKALLALMGNPACMNGLTTEHLKSHLQKYRLNYDRSRVEFLKYFDESVS 146
[Close]
BLAST of jgi.p|Trimin1|145800 vs. uniprot
Match: A0A485KRE8_9STRA (Aste57867_10584 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRE8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.070e-19
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDP---QGLTTEHVKSHLQKFRLHRDKSREEFL 189
            RF+WPD LH  FV A+FDVGLK ASP+ LL++M  P    GLTTEH+KSHLQK+RL+ D+SR EFL
Sbjct:  117 RFIWPDELHRLFVAAVFDVGLKNASPKALLNLMGTPACMSGLTTEHLKSHLQKYRLNYDRSRVEFL 182
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145800 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YR85_9STRA2.770e-48100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FKE9_ECTSI4.070e-2169.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S6I5N2_9STRA6.760e-2166.67Phosphorus starvation response 1 n=1 Tax=Nannochlo... [more]
A0A7S3LD31_9STRA9.010e-2156.94Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
W7U4E9_9STRA1.080e-2065.08Two-component response regulator arr12 n=2 Tax=Mon... [more]
T0Q2V8_SAPDV1.570e-1959.46Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A397B8B0_9STRA1.750e-1965.15Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9Y769_9STRA3.750e-1965.15Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024TY79_9STRA4.040e-1959.46Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485KRE8_9STRA4.070e-1965.15Aste57867_10584 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:158113..158337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145800|gw1.47.156.1
GOsGO:0000156,GO:0000160,GO:0001101,GO:0001763,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007623,GO:0008150,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009653,GO:0009719,GO:0009723,GO:0009725,GO:0009735,GO:0009736,GO:0009755,GO:0009873,GO:0009888,GO:0009889,GO:0009909,GO:0009933,GO:0009966,GO:0009987,GO:0010014,GO:0010015,GO:0010016,GO:0010033,GO:0010035,GO:0010073,GO:0010074,GO:0010075,GO:0010082,GO:0010119,GO:0010150,GO:0010223,GO:0010346,GO:0010380,GO:0010468,GO:0010492,GO:0010556,GO:0010646,GO:0019219,GO:0019222,GO:0019827,GO:0022622,GO:0023051,GO:0023052,GO:0031323,GO:0031326,GO:0031537,GO:0032501,GO:0032502,GO:0032870,GO:0035556,GO:0040008,GO:0042221,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048509,GO:0048511,GO:0048518,GO:0048532,GO:0048580,GO:0048583,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051193,GO:0051239,GO:0051252,GO:0051716,GO:0060089,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071368,GO:0071369,GO:0071495,GO:0080022,GO:0080036,GO:0080050,GO:0080090,GO:0080113,GO:0090056,GO:0090506,GO:0090693,GO:0098727,GO:0099402,GO:0140110,GO:1901401,GO:1901463,GO:1901700,GO:1903506,GO:1905392,GO:1905393,GO:2000026,GO:2000112,GO:2000241,GO:2000280,GO:2001141
Preferred namePCL1
DescriptionDNA-binding transcription factor activity
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGs2C4RN@1|root,2RIEW@2759|Eukaryota
Evalue2.58e-20
Seed ortholog112098.XP_008614581.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionG2-like domain Myb transcription factor
Ec32 orthologEc-12_002320.1
TranscriptId146122
TrackFilteredModels1
ProteinId145800
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145800gene_6193Tribonema minus UTEX_B_3156 geneContig_47 158113..158337 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6193_1exon_6193_1Tribonema minus UTEX_B_3156 exonContig_47 158113..158337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6193CDS_6193Tribonema minus UTEX_B_3156 CDSContig_47 158113..158337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145800Trimin1|145800|gw1.47.156.1Tribonema minus UTEX_B_3156 polypeptideContig_47 158113..158337 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6193 ID=mRNA_6193|Name=jgi.p|Trimin1|145800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_47:158113..158337- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGATTTGTCTGGCCGGATGCCCTCCATGCTGCTTTCGTGACTGCCATCTT
CGACGTCGGCTTAAAGTTGGCTAGCCCCAGGGTGTTACTGGACATGATGC
CCGACCCTCAGGGCTTGACGACGGAGCACGTAAAATCCCACTTACAAAAG
TTCAGATTGCACAGAGACAAGAGCCGGGAGGAGTTCCTGACTAAGCATGC
TGACGGGCTCAGCAAGGGCTTCGAC
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protein sequence of jgi.p|Trimin1|145800

>Trimin1|145800|gw1.47.156.1 ID=Trimin1|145800|gw1.47.156.1|Name=jgi.p|Trimin1|145800|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp
RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQK
FRLHRDKSREEFLTKHADGLSKGFD
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mRNA from alignment at Contig_47:158113..158337-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6193 ID=mRNA_6193|Name=jgi.p|Trimin1|145800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_47:158113..158337- (Tribonema minus UTEX_B_3156 )
CGATTTGTCTGGCCGGATGCCCTCCATGCTGCTTTCGTGACTGCCATCTT
CGACGTCGGCTTAAAGTTGGCTAGCCCCAGGGTGTTACTGGACATGATGC
CCGACCCTCAGGGCTTGACGACGGAGCACGTAAAATCCCACTTACAAAAG
TTCAGATTGCACAGAGACAAGAGCCGGGAGGAGTTCCTGACTAAGCATGC
TGACGGGCTCAGCAAGGGCTTCGAC
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Coding sequence (CDS) from alignment at Contig_47:158113..158337-

>mRNA_6193 ID=mRNA_6193|Name=jgi.p|Trimin1|145800|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_47:158113..158337- (Tribonema minus UTEX_B_3156 )
CGATTTGTCTGGCCGGATGCCCTCCATGCTGCTTTCGTGACTGCCATCTT
CGACGTCGGCTTAAAGTTGGCTAGCCCCAGGGTGTTACTGGACATGATGC
CCGACCCTCAGGGCTTGACGACGGAGCACGTAAAATCCCACTTACAAAAG
TTCAGATTGCACAGAGACAAGAGCCGGGAGGAGTTCCTGACTAAGCATGC
TGACGGGCTCAGCAAGGGCTTCGAC
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