mRNA_6099 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166585
Unique NamemRNA_6099
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A836CCW1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW1_9STRA)

HSP 1 Score: 751 bits (1938), Expect = 3.700e-274
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1
Query:    1 MGLSRHDQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPGVGRTFKDLKRTKVAPPQLEYQCL 1104
            MGLSRHDQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPGVGRTFKDLKRTKVAPPQLEYQCL
Sbjct:    1 MGLSRHDQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPGVGRTFKDLKRTKVAPPQLEYQCL 368          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: D7FQR5_ECTSI (FAD binding / catalytic/ tRNA dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR5_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 5.160e-151
Identity = 213/345 (61.74%), Postives = 257/345 (74.49%), Query Frame = 1
Query:    4 GLSRHDQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSG-GAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPG 1035
             L R  +  SLAPMMEYTDRHMRY+LRL T + V+WTEM+P  +I+HN DDL R L Y++  EHPVVLQ+GGSD   VR AC LARPY+YD INLN GCPSE+VAGKGAFGAALMR P LV D+C AM++G+G     +VKCRIGVD++DSY  LA FV+ V+RG GV  FIVHARKAIL GLSP QNR +PPLKYD+VYRLV+DFP++ FTLNGGV TY      L+ GAHGVMVGR+    PWYWSQ+DS +FGA D  L RR+VL+ Y EY E  E   G +WL  RRRL KP+W++FHGE GGKKFR  L+GM+ +++ F  I+  +L  +P D VD  PG
Sbjct:   74 ALGRGREVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEEAVSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFGAKDPGLTRREVLERYAEYGERQEKACGEKWLACRRRLAKPIWHMFHGEKGGKKFRVALEGMLREDKSFGEIVQKSLLAMPQDQVDWLPG 418          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A4D9D156_9STRA (tRNA-dihydrouridine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D156_9STRA)

HSP 1 Score: 374 bits (961), Expect = 1.940e-125
Identity = 194/343 (56.56%), Postives = 242/343 (70.55%), Query Frame = 1
Query:   19 DQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGA-QTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFGATDA--ALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLD-GMITQERPFHAIINDALQELPPDVVDAPPG 1035
            D+R+SLAPMMEYTDRH+R++LRL +K+MV++TEMI   ++ HN +  DR L ++   EHPVVLQLGGSDP  +  A  LA PY+Y+ +NLN GCPSERV+GKG FGAALMREP  VA++C AM EGS G    +VKCRIGVDD+DSY  LA FV+ V+    V  F+VHARKAIL GLSP+QNR+VPPLKY +VYRL R+FP L FTLNGGV +Y  V E L  G HGVM+GRAV+ RP+YWS  D+RVFG+ D    L RR+VL  Y  YA+  EA  G R    RR L+KPV NLF GEP GK+FRA LD  ++        ++  A   +P  +++  PG
Sbjct:   22 DERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPGQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSRGKIPVTVKCRIGVDDDDSYEQLAHFVETVSGASPVRHFLVHARKAILGGLSPDQNRRVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRM---RRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVLPG 361          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A7S3USD9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USD9_HETAK)

HSP 1 Score: 352 bits (903), Expect = 6.600e-116
Identity = 182/347 (52.45%), Postives = 232/347 (66.86%), Query Frame = 1
Query:   31 SLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNAD-DLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPGVGRTFKDLKRT 1068
            SLAPMM+YTDRHMR+++RL +K MV++TEMI  G+IV+N + +L R L Y +SCEHPVVLQLGGSDP  +R A   A PY+YD +NLN GCPSE+VAGKG FGAALMRE  LV D+C  M         +VK RIGVDDEDSY  L  F++ VA    V  FIVHAR AIL GLSP QNR++PPLKYDYVY LV+D+PE  FT+NGG+T Y  ++E L  G HGVMVGRA+   P+ WSQ D  V+GA +  L RR++L+ Y EY + +    G R    R+ L K + N F G+  GKKFR  +D ++  E P   + ++A + L  + +DA PG    + D   T
Sbjct:   53 SLAPMMDYTDRHMRFLMRLLSKDMVLYTEMIASGTIVNNPENELGRWLDYSESCEHPVVLQLGGSDPGELRRAAARAAPYRYDAVNLNCGCPSEKVAGKGCFGAALMREAELVGDLCRGMA-AELDCPVTVKSRIGVDDEDSYEGLCNFIETVADRSPVRHFIVHARTAILGGLSPAQNRQIPPLKYDYVYNLVKDYPEFQFTINGGITEYEEIREHLGRGVHGVMVGRAINADPYKWSQVDELVYGAANPGLTRREILERYGEYCDEMVELWGPR---VRQTLKKHILNFFVGQRNGKKFRCAMDKLVRTELPLSKVFSNAAEILTDETLDAKPGEKVVYPDSSFT 395          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A7S2C7I3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I3_9STRA)

HSP 1 Score: 344 bits (882), Expect = 1.110e-112
Identity = 183/346 (52.89%), Postives = 238/346 (68.79%), Query Frame = 1
Query:   19 DQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFG-ATDAALNRRQVLQTYFEYAEGVEAEAGARWLTY----RRRLLKPVWNLFHGEPGGKKFRARLDGMI-TQERPFHAIINDALQELPPDVVDAPPGV 1038
            D   S+APMM+YTDRH RY+LRL + K V++TEM+   ++VHN D +DR L      E+PVVLQLGGSD E +RT+ + A  Y YD+INLN GCPS++VAGKG+FGA LM + + V  +C AM +  G   T VKCRIGVDD+DSY  LA FV  V++ GGV  FIVHARKAIL GLSPE+NR++PP+KYD+VY+LV DFP L F++NG V TY  V E L  G HGVMVGR+V+E+PW WS+ DSR++G A+D   +RR+VL+ Y +YAE   +    +   Y    +R +L+   NLF GEP G+KFR  LD  + T  R  H I+  A   L P+ +DA PG+
Sbjct:   73 DHAFSVAPMMDYTDRHFRYLLRLLSSKAVLYTEMVGASTLVHNPD-IDRWLRLSDDVENPVVLQLGGSDCEDLRTSVKRASAYNYDEINLNCGCPSDKVAGKGSFGATLMLDAKRVGQLCDAMAQECGKPIT-VKCRIGVDDQDSYEQLAEFVGTVSQTGGVEHFIVHARKAILGGLSPEENRRIPPIKYDHVYQLVADFPSLRFSMNGEVKTYEDVSEHLSRGLHGVMVGRSVIEQPWLWSEVDSRIYGLASDNVPSRRKVLEAYADYAEQEISRMLIKDPKYAPRLKRAILRHTANLFRGEPNGRKFRVVLDQQLNTPGRSPHEILQTASGALFPETLDAGPGM 416          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A0G4ELS3_VITBC (tRNA-dihydrouridine synthase n=2 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ELS3_VITBC)

HSP 1 Score: 321 bits (822), Expect = 4.060e-104
Identity = 178/355 (50.14%), Postives = 237/355 (66.76%), Query Frame = 1
Query:   25 RLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHN---------ADDL-DRILGYD-QSCEHPVVLQLGGSDPELVRTACELARPYQ-YDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDG--GAHGVMVGRAVLERPWYWSQSDSRVFGATDAALNRRQVLQTYFEYAEG-VEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQ-ERPFHAIINDALQELPPDVVDAPPGVG 1041
            R S+APMM+YTD+H R+++RL T+   ++TEM+   ++ +          AD +  R L  + +S E P VLQLGGSDP+++  A   A  Y  + ++NLN GCPSERVAGKGAFGAALMREP LVA++C AMR+G GG  T+VKCRIGVDD+DS+  L RF+  VA   GVS FI+H+RKAIL GLSPEQNRK+PPL Y+YVYRLV  FP L FTLNGGV TY  +    +      GVMVGRAVL+RP+YWS+ DSR++G  +  LNRR+VL  Y  Y +  +E    +R  + R  LLK   NLF GEP  +K++ RL+ +  + +    AI+ +A ++L   V++  PG G
Sbjct:   20 RFSVAPMMDYTDKHFRFLMRLLTRNATLYTEMMAANALHYTNRQAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRTASAYHPFTELNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQG-GGRPTTVKCRIGVDDQDSFEELQRFISTVAERAGVSHFIIHSRKAILTGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDMHFERCPTLTGVMVGRAVLDRPFYWSEVDSRLYGRDNLGLNRREVLAAYGSYCDAEMERTDPSRQRSLRNLLLKHALNLFAGEPMSRKYKQRLEALRQRGDVSVSAILREAEEQLHEGVLERRPGSG 373          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A2K1I9E4_PHYPA (Dus domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1I9E4_PHYPA)

HSP 1 Score: 315 bits (808), Expect = 4.670e-101
Identity = 170/361 (47.09%), Postives = 225/361 (62.33%), Query Frame = 1
Query:   25 RLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYW-SQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPGVGRTFKDLKRTKVA-PPQLEYQC 1101
            R S+APMM++TD H R + RL +K   ++TEM+   +I+H  D+LD+ L +++  +HP+VLQLGGSDPE +  A  LA  Y+YD+INLN GCPSE+VAG G FGA+LM E  LVA+  AA+ EGS G   +VKCRIGVDD DSY  L +FV  V+       F+VHARKAILKGLSP  NR +PPLKY+YVY L+RDFP L FTLNGGV     V EAL  G  GVM+GRA    PW      D+ V+G +   L RRQ+L+ Y EYA+    + G +  + R  L+KP+  +FH E G   +R  +D  +       A++ + L  LP  V+D+PP +  T   L       PP   ++C
Sbjct:   85 RFSVAPMMDWTDNHYRTLARLMSKHAWLYTEMVVADTIIHQQDNLDKFLKFNE-VQHPIVLQLGGSDPEKLLKASLLASVYEYDEINLNCGCPSEKVAGHGCFGASLMLESGLVAECMAAIAEGSPGTPVTVKCRIGVDDFDSYDLLHKFVTTVSSSSPTQHFVVHARKAILKGLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGGVVNTHQVNEALQEGVFGVMLGRAAYNYPWATLGNVDNSVYGDSTPRLTRRQILEKYVEYADAELHKYGPKKPSVRH-LVKPLLGIFHAESGAGVWRRAVDNSLRNAETVGALLKETLCVLPDFVLDSPPPLEATSVSLHANLAPLPPTPSFEC 443          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A9U5E7_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U5E7_PHYPA)

HSP 1 Score: 312 bits (800), Expect = 1.090e-100
Identity = 166/344 (48.26%), Postives = 220/344 (63.95%), Query Frame = 1
Query:   25 RLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYW-SQSDSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPGVGRTFK 1053
            R S+APMM++TD H R + RL +K   ++TEM+   +I+H  D+LD+ L +++  +HP+VLQLGGSDPE +  A  LA  Y+YD+INLN GCPSE+VAG G FGA+LM E  LVA+  AA+ EGS G   +VKCRIGVDD DSY  L +FV  V+       F+VHARKAILKGLSP  NR +PPLKY+YVY L+RDFP L FTLNGGV     V EAL  G  GVM+GRA    PW      D+ V+G +   L RRQ+L+ Y EYA+    + G +  + R  L+KP+  +FH E G   +R  +D  +       A++ + L  LP  V+D+PP +  T +
Sbjct:   25 RFSVAPMMDWTDNHYRTLARLMSKHAWLYTEMVVADTIIHQQDNLDKFLKFNE-VQHPIVLQLGGSDPEKLLKASLLASVYEYDEINLNCGCPSEKVAGHGCFGASLMLESGLVAECMAAIAEGSPGTPVTVKCRIGVDDFDSYDLLHKFVTTVSSSSPTQHFVVHARKAILKGLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGGVVNTHQVNEALQEGVFGVMLGRAAYNYPWATLGNVDNSVYGDSTPRLTRRQILEKYVEYADAELHKYGPKKPSVRH-LVKPLLGIFHAESGAGVWRRAVDNSLRNAETVGALLKETLCVLPDFVLDSPPPLEATHR 366          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A7S3X053_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X053_EMIHU)

HSP 1 Score: 312 bits (799), Expect = 6.730e-100
Identity = 177/361 (49.03%), Postives = 227/361 (62.88%), Query Frame = 1
Query:   19 DQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVH-NADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGV----------DDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTY--------AGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFGAT-DAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQER-PFHAIINDALQE-LPPDVVDAPPG 1035
            D  LS+APMM+YT+R +RY+LR  T++  ++TEM+   ++VH +  +L R L +D   EHPVVLQ+GGSDP ++R A  L   + YD INLN GCPS+RVAG G FGAALMREP LV D CAAM EG+ G   SVKCRIGV          D+++    LA FV  VA  GGVS F VHAR+A+L GLSP QNR+VPPL Y  V RL    P LSF+LNGGV           AG     DG   GVMVGRAV+ RPW W+ +DS ++GA  D A +RR++L+ Y  + + +EA    R    RR +L P  NLF GEP GKKFRA LD     +   F +++  A ++ L P+ +D+ PG
Sbjct:   41 DGALSVAPMMDYTNRFLRYLLRRVTRRTTLYTEMVTANTLVHCDPGELPRFLEHDGDNEHPVVLQIGGSDPAMLRRASALGASWGYDAINLNCGCPSDRVAGSGCFGAALMREPSLVGDCCAAMSEGAPGVPISVKCRIGVVGSAAEAIGADEDELLEQLASFVTTVAERGGVSHFAVHARQAVLGGLSPAQNRQVPPLHYGVVERLAAALPHLSFSLNGGVEDLDAARAILLAGADSPSDGRLSGVMVGRAVVSRPWRWATADSTLYGAAADPAQSRRRLLEEYAAWGDAIEATTPQR---IRRLVLAPALNLFAGEPRGKKFRAALDTRAKDDSLGFSSLLLGAAEDVLLPETLDSAPG 398          
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Match: A0A7R9YB36_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB36_9STRA)

HSP 1 Score: 310 bits (795), Expect = 2.110e-99
Identity = 174/352 (49.43%), Postives = 224/352 (63.64%), Query Frame = 1
Query:   31 SLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADD--LDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAIL-KGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFG----------ATDAAL----NRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNLFHGEPGGKKFRARLDGMITQ-ERPFHAIINDALQELPPDVVDAPP 1032
            S+APMM+YTDRH R++ RL +K+ V+WTEM+    +VH  DD  LDR L Y    E P+VLQLGGSDP++VR A  +A  + YD++NLN GCPSERVAGKG FGAALMRE  LVADI  A++EG  G   SVKCR+GVD+ DSY     FV  +    GV  F+VHARKA+L K  +PE NRK+P L+YD V RL++D P+L  T+NGG+TT+  +   L+ G  GVM+GRA + RP+YWS+ D  V+G          AT        +R  VLQ Y  YAE   A+   R    RR L KP+ NLF GE  GK++R  LD  I   E+ F  ++  A +ELP +V+ A P
Sbjct:   70 SVAPMMDYTDRHFRFLFRLLSKETVLWTEMVTAQKVVHAPDDALLDRFLAYSPQ-EEPLVLQLGGSDPDVVRGAARIASDFGYDEVNLNCGCPSERVAGKGCFGAALMREKDLVADIMQAVQEGMPGLPASVKCRVGVDEMDSYDEFRDFVATIHERAGVEHFVVHARKALLGKKFTPEDNRKIPKLQYDRVLRLMQDMPQLRVTINGGITTFEEIDRFLEAGCSGVMIGRAAIYRPFYWSRVDELVYGRDPPESGELVATPLGQFPERSRGAVLQQYCAYAEEQLADEEIR---IRRFLGKPLQNLFAGERSGKRYRKALDENICNPEQSFSQVVWAAAKELPEEVLAALP 417          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166585 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCW1_9STRA3.700e-274100.00tRNA-dihydrouridine synthase n=1 Tax=Tribonema min... [more]
D7FQR5_ECTSI5.160e-15161.74FAD binding / catalytic/ tRNA dihydrouridine synth... [more]
A0A4D9D156_9STRA1.940e-12556.56tRNA-dihydrouridine synthase n=3 Tax=Monodopsidace... [more]
A0A7S3USD9_HETAK6.600e-11652.45Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S2C7I3_9STRA1.110e-11252.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4ELS3_VITBC4.060e-10450.14tRNA-dihydrouridine synthase n=2 Tax=Vitrella bras... [more]
A0A2K1I9E4_PHYPA4.670e-10147.09Dus domain-containing protein n=4 Tax=Physcomitriu... [more]
A9U5E7_PHYPA1.090e-10048.26Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A7S3X053_EMIHU6.730e-10049.03Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7R9YB36_9STRA2.110e-9949.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:518328..521630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166585|e_gw1.45.147.1
BRITEko00000,ko01000,ko03016
KEGG koko:K05539,ko:K05542
EC1.3.1.88
DescriptiontRNA dihydrouridine synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0042@1|root,KOG2335@2759|Eukaryota
Evalue8.46e-152
Seed ortholog2880.D7FQR5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD binding / catalytic/ tRNA dihydrouridine synthase
Ec32 orthologEc-01_000230.1
TranscriptId166907
TrackFilteredModels1
ProteinId166585
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166585gene_6099Tribonema minus UTEX_B_3156 geneContig_45 518328..521630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166585Trimin1|166585|e_gw1.45.147.1Tribonema minus UTEX_B_3156 polypeptideContig_45 518328..521630 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6099_6exon_6099_6Tribonema minus UTEX_B_3156 exonContig_45 518328..518474 -
exon_6099_5exon_6099_5Tribonema minus UTEX_B_3156 exonContig_45 518943..519205 -
exon_6099_4exon_6099_4Tribonema minus UTEX_B_3156 exonContig_45 519517..519628 -
exon_6099_3exon_6099_3Tribonema minus UTEX_B_3156 exonContig_45 520049..520363 -
exon_6099_2exon_6099_2Tribonema minus UTEX_B_3156 exonContig_45 520862..521014 -
exon_6099_1exon_6099_1Tribonema minus UTEX_B_3156 exonContig_45 521514..521630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6099CDS_6099Tribonema minus UTEX_B_3156 CDSContig_45 521514..521630 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6099 ID=mRNA_6099|Name=jgi.p|Trimin1|166585|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1107bp|location=Sequence derived from alignment at Contig_45:518328..521630- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTAAGCAGGCACGACCAGAGGTTGTCTCTGGCGCCCATGATGGA
GTATACGGACAGGCATATGAGGTACATGCTGCGGCTATACACGAAGAAGA
TGGTCATGTGGACAGAGATGATCCCCATAGGCAGCATTGTACACAACGCG
GATGACTTGGATCGCATCCTGGGCTACGACCAGAGCTGTGAACACCCTGT
GGTGCTGCAACTGGGAGGCAGTGACCCTGAACTGGTGCGCACTGCATGTG
AGCTGGCGCGGCCTTATCAGTACGACCAAATAAACCTCAACGTCGGCTGC
CCGAGCGAGCGCGTGGCGGGCAAGGGCGCCTTCGGCGCGGCGCTCATGCG
TGAGCCGCGCCTCGTTGCCGACATCTGCGCCGCGATGCGCGAGGGCAGCG
GCGGCGCGCAGACGAGCGTCAAGTGCCGCATCGGCGTGGACGACGAGGAC
TCGTACGCGTCGCTCGCGCGCTTCGTCGACGTGGTCGCGCGCGGCGGCGG
CGTGAGCGACTTCATCGTCCACGCGCGCAAGGCGATCCTCAAGGGGCTCA
GCCCGGAGCAGAACAGGAAGGTGCCGCCGCTGAAGTATGACTACGTGTAC
CGGCTAGTGCGCGATTTCCCTGAGCTGAGCTTTACACTGAATGGCGGCGT
CACCACCTACGCGGGCGTGCAGGAGGCCTTGGACGGCGGAGCCCATGGTG
TGATGGTGGGCCGCGCCGTGCTGGAGCGGCCCTGGTACTGGAGTCAATCC
GACTCGCGCGTGTTCGGTGCGACAGACGCCGCGCTCAACCGCCGCCAGGT
GCTCCAGACATACTTCGAGTATGCCGAGGGCGTGGAGGCGGAGGCGGGGG
CGCGCTGGCTGACGTACAGGCGCCGCCTCCTGAAGCCGGTGTGGAACCTG
TTCCACGGCGAGCCGGGGGGGAAGAAGTTCCGCGCGCGGCTGGACGGGAT
GATCACTCAGGAGCGACCATTCCACGCCATCATCAACGATGCACTTCAAG
AACTGCCACCGGACGTGGTCGATGCACCACCTGGCGTCGGCAGGACCTTC
AAGGACCTGAAGCGCACCAAAGTAGCACCGCCACAGCTGGAGTATCAGTG
CTTGTGA
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protein sequence of jgi.p|Trimin1|166585

>Trimin1|166585|e_gw1.45.147.1 ID=Trimin1|166585|e_gw1.45.147.1|Name=jgi.p|Trimin1|166585|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=369bp
MGLSRHDQRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNA
DDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGC
PSERVAGKGAFGAALMREPRLVADICAAMREGSGGAQTSVKCRIGVDDED
SYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVY
RLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQS
DSRVFGATDAALNRRQVLQTYFEYAEGVEAEAGARWLTYRRRLLKPVWNL
FHGEPGGKKFRARLDGMITQERPFHAIINDALQELPPDVVDAPPGVGRTF
KDLKRTKVAPPQLEYQCL*
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mRNA from alignment at Contig_45:518328..521630-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6099 ID=mRNA_6099|Name=jgi.p|Trimin1|166585|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3303bp|location=Sequence derived from alignment at Contig_45:518328..521630- (Tribonema minus UTEX_B_3156 )
ATGGGGCTAAGCAGGCACGACCAGAGGTTGTCTCTGGCGCCCATGATGGA GTATACGGACAGGCATATGAGGTACATGCTGCGGCTATACACGAAGAAGA TGGTCATGTGGACAGAGGTGAGGCCTCACACGGCTTTCGTCACGCTGTGT TGATGCGATGGTTTGCTAATGGCCACGTCCGACCTGAACAGCTGCAAGGG CACTGCTGTTTGCACTTTAGCAACGCTGATGTTGTTATTCAGCATACCGT CGTCAAAGGCGTGTGCTTTACACACCGACAGACAACGGCGCATCGCTTGC TGCGTTTCCCATGCTGCGAGACTATAGCAATTGTGCATCCAGTGGCCTCG TCATATGTGCCAAAGATGCTCTTGCCTGATCGGTAATGCAGAGCATCTTT CACTGTCAGGGTCACTGCCAGCAGTATTCTAGGACCCCTGATGCAGTTGC ACTTGCTATGGCTAGCAATTACTAAGAATCGCTCCTCTTAGACTGCAGTA GCACTGTGCCATCAGTGCTGCATACCTATCATATGTCTGCGGAGTGCTGG TCTGCAAGGCATTCTCTACGCCAAGATGCCGATGGCAGTGGAACTGTTTC TGTGCTTTCTGTGCAGATGATCCCCATAGGCAGCATTGTACACAACGCGG ATGACTTGGATCGCATCCTGGGCTACGACCAGAGCTGTGAACACCCTGTG GTGCTGCAACTGGGAGGCAGTGACCCTGAACTGGTGCGCACTGCATGTGA GCTGGCGCGGCCTTATCAGGTGCGTGCCCGTGTCTGGTGGAGCATGTCCA AAGTCTTTCCGCTATAGCTACAGATCCACCCTCAAGTCACTCAATGGCGT ACTGTCAGATGCTGTAAGGCGCACAACTGTCTTTTTCCTTTGCGGCACGC GGTAGCTTCATTGTGCGCCGCTGGAAGAGCAGCCAAACATTGGAGCGTCT TCACACGTGCCTTCAGCGCTGTCGAGTATCCGTTGCACACCAGCAGCATC AGTTCCTGCAGACTCCCTGGAGCACGGTGCGTCAAGTGACACGAGTGCAT CCCCATTCTATAGCATTTCAGGAGCAAGTATGAGCATTGACAGCACAGGA TCGTCCGAGGCAGGATGGTGCGAGGTCATCAGCTTATACCTGTGCCCCAG AAAGCAGCAATCATGAGCTGGTTGCACTGTCACCACGCTCGAGGCTTGCA GATCGCCGTCCATAACCATGATACCCGCCCATACCCCCCCCCCCCCCCCC CCTCTGACGCACTCCAGTACGACCAAATAAACCTCAACGTCGGCTGCCCG AGCGAGCGCGTGGCGGGCAAGGGCGCCTTCGGCGCGGCGCTCATGCGTGA GCCGCGCCTCGTTGCCGACATCTGCGCCGCGATGCGCGAGGGCAGCGGCG GCGCGCAGACGAGCGTCAAGTGCCGCATCGGCGTGGACGACGAGGACTCG TACGCGTCGCTCGCGCGCTTCGTCGACGTGGTCGCGCGCGGCGGCGGCGT GAGCGACTTCATCGTCCACGCGCGCAAGGCGATCCTCAAGGGGCTCAGCC CGGAGCAGAACAGGAAGGTGCCGCCGCTGAAGGTGCGCGCGCGCAGAGGC GGCTTGGTCCTTTGTAGTATCATTCAATGCATTCACTTGACTGTGGCGTG TTGGCGATCGCGACGAGTCGGCGAACATCTCAGGCCGATATGCCACAATC AGTTGTGTTAATGCGGTCCCTGTGTCGCACTTTGCGAGGTCTGAAGATCA TGCGCGCAACTGCGCAGTCCAAAACTGATCCACGCCATACGCGCAGCTTG GTCATGCTGTAGCTTGCGTCCTATGCTGCAGTGTGCGCGGTGTTCATGAA CGCGATTCGCTGACTGCCTGCAGCAACCGTGACAGTAAAACGTGAAGATG ACAAGTCATGATGTCAATTGCGCTCGTTGTCCATGAAAAGAGCAACTGAG ATTACCGTCTCTAAACCACTGCGCCCTGCCGCTGCTGTTGTCACTGCTGC AGTATGACTACGTGTACCGGCTAGTGCGCGATTTCCCTGAGCTGAGCTTT ACACTGAATGGCGGCGTCACCACCTACGCGGGCGTGCAGGAGGCCTTGGA CGGCGGAGCCCATGGTGAGTGGGACACGTGTGCATGTACATACAGCGCAT CCATTCTAATCTAAAGCAACATGCCATTGCATACTCTCCTTTCTCTCTTG TATGCTGACCAAAGTGCCTGCATTGAAATCAGACACAATATCCCTCCCCC TCCAAAAAAGCTGAATTTGAGCTACATGATGATACCCCCGCACCCTCTTC ATTCGGAATGAACAGATGATGATGATGCCCTTAACACACTTAAGTGTGGA TGACCCCCCTCACCCCCCCATGTGGCCGGACAGTTAACAACGCCCTGCTC CCTCCTTCAACGTGAATTCATTCAGGTGTGATGGTGGGCCGCGCCGTGCT GGAGCGGCCCTGGTACTGGAGTCAATCCGACTCGCGCGTGTTCGGTGCGA CAGACGCCGCGCTCAACCGCCGCCAGGTGCTCCAGACATACTTCGAGTAT GCCGAGGGCGTGGAGGCGGAGGCGGGGGCGCGCTGGCTGACGTACAGGCG CCGCCTCCTGAAGCCGGTGTGGAACCTGTTCCACGGCGAGCCGGGGGGGA AGAAGTTCCGCGCGCGGCTGGACGGGATGATCACTCAGGTGAAAGCGATG AGCATGGCGCGTGAGCGATCTGCACAGGTCTCCATGAGTTGCCTGTTTAC GGTGCTGTGCTCATTTTGATGTTTGCTTGATTGGGCGTGTGGACGCTGCG TGTTGGACGTGGGCGGGTGCTGCGCGGATGGATGCACCGCTGTGCGCCGC GTGCCGCGTTGCGCGCCAGTGTCACGCCCGCCTCTGGGCGTTGCCTGCGA GCTTGATGGGCTTTGTCCAGTGCCACCAGGACGAAGGCACATGCACACGT CAAGCTGGGATAGTCGAGCTGAGATTATGCAACGATGTTGACTGGCGTTC ACTGCGCGATTGGATGACGTCCGAGGCGTGCTTGTTGGTGGTTTTCTCCC TCGCCCTGTGCTCGTGGAGTTAGTGTCCTGATCCCACTGCGGGGCATTGT GTGCGTTGCGCTGCTGAGTGTGTGCGCTGCGCGGCTGTCCTGCCATGTTC ACACAGGAGCGACCATTCCACGCCATCATCAACGATGCACTTCAAGAACT GCCACCGGACGTGGTCGATGCACCACCTGGCGTCGGCAGGACCTTCAAGG ACCTGAAGCGCACCAAAGTAGCACCGCCACAGCTGGAGTATCAGTGCTTG TGA
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Coding sequence (CDS) from alignment at Contig_45:518328..521630-

>mRNA_6099 ID=mRNA_6099|Name=jgi.p|Trimin1|166585|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1107bp|location=Sequence derived from alignment at Contig_45:518328..521630- (Tribonema minus UTEX_B_3156 )
ATGGGGCTAAGCAGGCACGACCAGAGGTTGTCTCTGGCGCCCATGATGGA
GTATACGGACAGGCATATGAGGTACATGCTGCGGCTATACACGAAGAAGA
TGGTCATGTGGACAGAGATGATCCCCATAGGCAGCATTGTACACAACGCG
GATGACTTGGATCGCATCCTGGGCTACGACCAGAGCTGTGAACACCCTGT
GGTGCTGCAACTGGGAGGCAGTGACCCTGAACTGGTGCGCACTGCATGTG
AGCTGGCGCGGCCTTATCAGTACGACCAAATAAACCTCAACGTCGGCTGC
CCGAGCGAGCGCGTGGCGGGCAAGGGCGCCTTCGGCGCGGCGCTCATGCG
TGAGCCGCGCCTCGTTGCCGACATCTGCGCCGCGATGCGCGAGGGCAGCG
GCGGCGCGCAGACGAGCGTCAAGTGCCGCATCGGCGTGGACGACGAGGAC
TCGTACGCGTCGCTCGCGCGCTTCGTCGACGTGGTCGCGCGCGGCGGCGG
CGTGAGCGACTTCATCGTCCACGCGCGCAAGGCGATCCTCAAGGGGCTCA
GCCCGGAGCAGAACAGGAAGGTGCCGCCGCTGAAGTATGACTACGTGTAC
CGGCTAGTGCGCGATTTCCCTGAGCTGAGCTTTACACTGAATGGCGGCGT
CACCACCTACGCGGGCGTGCAGGAGGCCTTGGACGGCGGAGCCCATGGTG
TGATGGTGGGCCGCGCCGTGCTGGAGCGGCCCTGGTACTGGAGTCAATCC
GACTCGCGCGTGTTCGGTGCGACAGACGCCGCGCTCAACCGCCGCCAGGT
GCTCCAGACATACTTCGAGTATGCCGAGGGCGTGGAGGCGGAGGCGGGGG
CGCGCTGGCTGACGTACAGGCGCCGCCTCCTGAAGCCGGTGTGGAACCTG
TTCCACGGCGAGCCGGGGGGGAAGAAGTTCCGCGCGCGGCTGGACGGGAT
GATCACTCAGGAGCGACCATTCCACGCCATCATCAACGATGCACTTCAAG
AACTGCCACCGGACGTGGTCGATGCACCACCTGGCGTCGGCAGGACCTTC
AAGGACCTGAAGCGCACCAAAGTAGCACCGCCACAGCTGGAGTATCAGTG
CTTGTGA
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