mRNA_6058 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A835YSR9_9STRA (MIR motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR9_9STRA) HSP 1 Score: 338 bits (866), Expect = 1.450e-117 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 Query: 1 MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCSTL 492 MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCSTL Sbjct: 1 MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCSTL 164
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: D8LG55_ECTSI (Similar to Stromal cell-derived factor 2 (SDF-2) (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG55_ECTSI) HSP 1 Score: 181 bits (458), Expect = 2.880e-55 Identity = 87/160 (54.37%), Postives = 110/160 (68.75%), Query Frame = 1 Query: 10 VATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCST 489 VA L L+A + AG +V VTCGS +KL+H T + LHSH ++WG GSGQQSVT +G DDQG ++IVKE LPCE G V CG +VRLEH+ T +NLH+H F SPL R QEVSAFG+ G+GD+GD+W V CV S +W +D V H++ S ST Sbjct: 10 VAALLLLAAACSVGAG-EVLVTCGSVIKLRHDTTRFHLHSHVIKWGGGSGQQSVTGHGGEDDQGSMWIVKEGDGALPCEVGQPVACGSVVRLEHVSTGRNLHSHNFKSPLTRGQEVSAFGDSGEGDAGDSWEVTCVHKGSETWARDESVRLKHVSTSNST 168
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A7S3DBZ2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBZ2_9EUKA) HSP 1 Score: 152 bits (385), Expect = 1.180e-43 Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = 1 Query: 70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGS-WLKDGKVSRLHLN 474 VTCGS++KL++ +G++LHSH V+WG+GSGQQSVT+ G+ DD L++V H C GT VKCG +RL H T+ NLH+H F SPL + QEVSAFG EG+GD+GDNW+V+C++ GS W + + H + Sbjct: 28 VTCGSSIKLKNRASGFRLHSHDVKWGSGSGQQSVTSTGSKDDPNSLWVVHAKHGDPMCPRGTPVKCGDTIRLMHSATRANLHSHLFRSPLSQQQEVSAFGVEGEGDTGDNWIVDCLNAQPGSNWDRKSAIRFRHAD 163
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A4D9DC59_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC59_9STRA) HSP 1 Score: 151 bits (382), Expect = 4.320e-43 Identity = 75/136 (55.15%), Postives = 92/136 (67.65%), Query Frame = 1 Query: 61 DVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLH 468 D +T GS VKLQHV + Y LHSHQ+ WG+GSGQQSVTA+G+ADD+G L++V E N E G+ V CG +RL HM T KNLH+H F SPL QEVS FG+ G GDSGDNW V C+ P + W + +V H Sbjct: 27 DDIMTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKH 162
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A7S3H152_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H152_9STRA) HSP 1 Score: 151 bits (382), Expect = 5.410e-43 Identity = 76/154 (49.35%), Postives = 99/154 (64.29%), Query Frame = 1 Query: 19 LFALSALAGLAAGRDVE-VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEE-GDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474 L + A L A +D + VTCGS +KL H +TG LHSH + WG+GSGQQSVT N +D+G L++VKE PCE G V+CG +RLEH+ T+KNLH+H F +PL QEVSAFG+E G+GD+GDNW V C + W + V H + Sbjct: 18 LLLILACVQLEAAKDNDPVTCGSVIKLIHKETGNNLHSHGIAWGSGSGQQSVTTNSVKNDKGSLWLVKEGFRAAPCEVGKPVQCGETIRLEHLDTRKNLHSHLFRAPLSGNQEVSAFGDENGNGDTGDNWQVHCDSSADAVWNRKKPVVFRHAD 171
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A812U349_SYMMI (Sdf2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U349_SYMMI) HSP 1 Score: 150 bits (380), Expect = 7.300e-43 Identity = 75/149 (50.34%), Postives = 98/149 (65.77%), Query Frame = 1 Query: 28 LSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474 LS+L L + D V+CGS VKL +V++ + LHSH + +G+GSGQQSVTA+G+ DDQG L+++ E CEAGT +KCG +RL HM T KNLH+H F SPL EVS FGE G GD+GDNW V+C WL+ V H++ Sbjct: 13 LSSLLCLISAEDQVVSCGSAVKLLNVQSNHHLHSHGIAYGSGSGQQSVTAHGSVDDQGSLWLLTEGEGSPLCEAGTPIKCGSRIRLRHMSTGKNLHSHMFKSPLSGNFEVSGFGENGHGDTGDNWEVQCR--KGPYWLRGEHVQLKHVD 159
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A7M5X577_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X577_9CNID) HSP 1 Score: 145 bits (367), Expect = 4.230e-41 Identity = 69/135 (51.11%), Postives = 98/135 (72.59%), Query Frame = 1 Query: 70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474 VTCGS++KL + + +LHSH V++G+GSGQQSVT + +ADDQ +IV+ H G C+ GTV+KCG +RL+H+ T++NLH+H F SP+ QEVSAFGE GDGDSGD+W V+C S+ +W ++ K+ H + Sbjct: 28 VTCGSSLKLFNNRQNIRLHSHDVKYGSGSGQQSVTGSRSADDQNSYWIVRGRH-GQKCDRGTVIKCGDKIRLQHLATKRNLHSHFFQSPITHNQEVSAFGEGGDGDSGDDWEVKC---STKNWNRNDKIRFKHAD 158
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: UPI00077EFE52 (stromal cell-derived factor 2-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI00077EFE52) HSP 1 Score: 144 bits (364), Expect = 1.470e-40 Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = 1 Query: 70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRS 480 VTCGST+KL +V +LHSH+V++G+GSGQQSVT N +D +++K P N L C G V+KCG +RLEH+ T+KNLH+H F SPL QEVSAFG+EG+GD+GD W V C W +D V H + S Sbjct: 22 VTCGSTLKLLNVHHKVRLHSHEVKYGSGSGQQSVTGNDHKEDVNSHWVIKGPTNKLVCPRGEVIKCGQEIRLEHLATKKNLHSHHFSSPLSNSQEVSAFGDEGEGDTGDVWTVVC---DGEYWSRDATVMFKHSDTS 155
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A0D2WV25_CAPO3 (Mannosyltransferase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WV25_CAPO3) HSP 1 Score: 143 bits (361), Expect = 6.680e-40 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 Query: 70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHL 471 VTCGS VKL H TG +LHSH+V++G GS QQSVT ADD + V+ PH+ CE G +KCG +VRL H+ T++NLH+H+F SPL L EVSAFGE G+GD+GDNW EC W+++ V H+ Sbjct: 43 VTCGSVVKLTHAPTGAKLHSHEVKYGTGSTQQSVTGFPQADDTNSYWTVRGPHDEY-CERGHPIKCGDVVRLTHLNTRRNLHSHQFQSPLSGLVEVSAFGEGGNGDAGDNWKAECT---GSHWMRNADVRLRHV 172
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: B7P701_IXOSC (Uncharacterized protein n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7P701_IXOSC) HSP 1 Score: 140 bits (352), Expect = 1.330e-39 Identity = 67/135 (49.63%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474 VTCGS +KLQ+ + G +LHSH +++G+GSGQQSVT DD +++K G C G V CG VRLEH+ T KNLH+H FVSPL QE+SAFG+ G+GD+GDNW V C SS W + V H++ Sbjct: 11 VTCGSVLKLQNTEHGVRLHSHDIKYGSGSGQQSVTGTDQMDDNNSHWVLKAKRGGS-CPRGEPVACGSTVRLEHLTTHKNLHSHHFVSPLSNNQEISAFGDSGEGDTGDNWTVVC---SSDFWERGATVRLKHVD 141 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6058 ID=mRNA_6058|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_45:220517..221702- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCAAGGGTGGCAACTTTGTTCGCTCTGAGCGCGCTGGCGGGTCTAGCback to top protein sequence of jgi.p|Trimin1|166539 >Trimin1|166539|e_gw1.45.126.1 ID=Trimin1|166539|e_gw1.45.126.1|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAback to top mRNA from alignment at Contig_45:220517..221702- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6058 ID=mRNA_6058|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1186bp|location=Sequence derived from alignment at Contig_45:220517..221702- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_45:220517..221702- >mRNA_6058 ID=mRNA_6058|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_45:220517..221702- (Tribonema minus UTEX_B_3156 )back to top |