mRNA_6058 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166539
Unique NamemRNA_6058
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A835YSR9_9STRA (MIR motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR9_9STRA)

HSP 1 Score: 338 bits (866), Expect = 1.450e-117
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
Query:    1 MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCSTL 492
            MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCSTL
Sbjct:    1 MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCSTL 164          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: D8LG55_ECTSI (Similar to Stromal cell-derived factor 2 (SDF-2) (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG55_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.880e-55
Identity = 87/160 (54.37%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   10 VATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRSCST 489
            VA L  L+A   + AG +V VTCGS +KL+H  T + LHSH ++WG GSGQQSVT +G  DDQG ++IVKE    LPCE G  V CG +VRLEH+ T +NLH+H F SPL R QEVSAFG+ G+GD+GD+W V CV   S +W +D  V   H++ S ST
Sbjct:   10 VAALLLLAAACSVGAG-EVLVTCGSVIKLRHDTTRFHLHSHVIKWGGGSGQQSVTGHGGEDDQGSMWIVKEGDGALPCEVGQPVACGSVVRLEHVSTGRNLHSHNFKSPLTRGQEVSAFGDSGEGDAGDSWEVTCVHKGSETWARDESVRLKHVSTSNST 168          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A7S3DBZ2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBZ2_9EUKA)

HSP 1 Score: 152 bits (385), Expect = 1.180e-43
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGS-WLKDGKVSRLHLN 474
            VTCGS++KL++  +G++LHSH V+WG+GSGQQSVT+ G+ DD   L++V   H    C  GT VKCG  +RL H  T+ NLH+H F SPL + QEVSAFG EG+GD+GDNW+V+C++   GS W +   +   H +
Sbjct:   28 VTCGSSIKLKNRASGFRLHSHDVKWGSGSGQQSVTSTGSKDDPNSLWVVHAKHGDPMCPRGTPVKCGDTIRLMHSATRANLHSHLFRSPLSQQQEVSAFGVEGEGDTGDNWIVDCLNAQPGSNWDRKSAIRFRHAD 163          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A4D9DC59_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC59_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.320e-43
Identity = 75/136 (55.15%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   61 DVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLH 468
            D  +T GS VKLQHV + Y LHSHQ+ WG+GSGQQSVTA+G+ADD+G L++V E  N    E G+ V CG  +RL HM T KNLH+H F SPL   QEVS FG+ G GDSGDNW V C+ P +  W +  +V   H
Sbjct:   27 DDIMTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKH 162          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A7S3H152_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H152_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.410e-43
Identity = 76/154 (49.35%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   19 LFALSALAGLAAGRDVE-VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEE-GDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474
            L  + A   L A +D + VTCGS +KL H +TG  LHSH + WG+GSGQQSVT N   +D+G L++VKE     PCE G  V+CG  +RLEH+ T+KNLH+H F +PL   QEVSAFG+E G+GD+GDNW V C   +   W +   V   H +
Sbjct:   18 LLLILACVQLEAAKDNDPVTCGSVIKLIHKETGNNLHSHGIAWGSGSGQQSVTTNSVKNDKGSLWLVKEGFRAAPCEVGKPVQCGETIRLEHLDTRKNLHSHLFRAPLSGNQEVSAFGDENGNGDTGDNWQVHCDSSADAVWNRKKPVVFRHAD 171          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A812U349_SYMMI (Sdf2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U349_SYMMI)

HSP 1 Score: 150 bits (380), Expect = 7.300e-43
Identity = 75/149 (50.34%), Postives = 98/149 (65.77%), Query Frame = 1
Query:   28 LSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474
            LS+L  L +  D  V+CGS VKL +V++ + LHSH + +G+GSGQQSVTA+G+ DDQG L+++ E      CEAGT +KCG  +RL HM T KNLH+H F SPL    EVS FGE G GD+GDNW V+C       WL+   V   H++
Sbjct:   13 LSSLLCLISAEDQVVSCGSAVKLLNVQSNHHLHSHGIAYGSGSGQQSVTAHGSVDDQGSLWLLTEGEGSPLCEAGTPIKCGSRIRLRHMSTGKNLHSHMFKSPLSGNFEVSGFGENGHGDTGDNWEVQCR--KGPYWLRGEHVQLKHVD 159          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A7M5X577_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X577_9CNID)

HSP 1 Score: 145 bits (367), Expect = 4.230e-41
Identity = 69/135 (51.11%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474
            VTCGS++KL + +   +LHSH V++G+GSGQQSVT + +ADDQ   +IV+  H G  C+ GTV+KCG  +RL+H+ T++NLH+H F SP+   QEVSAFGE GDGDSGD+W V+C   S+ +W ++ K+   H +
Sbjct:   28 VTCGSSLKLFNNRQNIRLHSHDVKYGSGSGQQSVTGSRSADDQNSYWIVRGRH-GQKCDRGTVIKCGDKIRLQHLATKRNLHSHFFQSPITHNQEVSAFGEGGDGDSGDDWEVKC---STKNWNRNDKIRFKHAD 158          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: UPI00077EFE52 (stromal cell-derived factor 2-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI00077EFE52)

HSP 1 Score: 144 bits (364), Expect = 1.470e-40
Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLNRS 480
            VTCGST+KL +V    +LHSH+V++G+GSGQQSVT N   +D    +++K P N L C  G V+KCG  +RLEH+ T+KNLH+H F SPL   QEVSAFG+EG+GD+GD W V C       W +D  V   H + S
Sbjct:   22 VTCGSTLKLLNVHHKVRLHSHEVKYGSGSGQQSVTGNDHKEDVNSHWVIKGPTNKLVCPRGEVIKCGQEIRLEHLATKKNLHSHHFSSPLSNSQEVSAFGDEGEGDTGDVWTVVC---DGEYWSRDATVMFKHSDTS 155          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: A0A0D2WV25_CAPO3 (Mannosyltransferase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WV25_CAPO3)

HSP 1 Score: 143 bits (361), Expect = 6.680e-40
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1
Query:   70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHL 471
            VTCGS VKL H  TG +LHSH+V++G GS QQSVT    ADD    + V+ PH+   CE G  +KCG +VRL H+ T++NLH+H+F SPL  L EVSAFGE G+GD+GDNW  EC       W+++  V   H+
Sbjct:   43 VTCGSVVKLTHAPTGAKLHSHEVKYGTGSTQQSVTGFPQADDTNSYWTVRGPHDEY-CERGHPIKCGDVVRLTHLNTRRNLHSHQFQSPLSGLVEVSAFGEGGNGDAGDNWKAECT---GSHWMRNADVRLRHV 172          
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Match: B7P701_IXOSC (Uncharacterized protein n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7P701_IXOSC)

HSP 1 Score: 140 bits (352), Expect = 1.330e-39
Identity = 67/135 (49.63%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   70 VTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 474
            VTCGS +KLQ+ + G +LHSH +++G+GSGQQSVT     DD    +++K    G  C  G  V CG  VRLEH+ T KNLH+H FVSPL   QE+SAFG+ G+GD+GDNW V C   SS  W +   V   H++
Sbjct:   11 VTCGSVLKLQNTEHGVRLHSHDIKYGSGSGQQSVTGTDQMDDNNSHWVLKAKRGGS-CPRGEPVACGSTVRLEHLTTHKNLHSHHFVSPLSNNQEISAFGDSGEGDTGDNWTVVC---SSDFWERGATVRLKHVD 141          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166539 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSR9_9STRA1.450e-117100.00MIR motif-containing protein n=1 Tax=Tribonema min... [more]
D8LG55_ECTSI2.880e-5554.38Similar to Stromal cell-derived factor 2 (SDF-2) (... [more]
A0A7S3DBZ2_9EUKA1.180e-4350.74Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A4D9DC59_9STRA4.320e-4355.15Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S3H152_9STRA5.410e-4349.35Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812U349_SYMMI7.300e-4350.34Sdf2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7M5X577_9CNID4.230e-4151.11Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
UPI00077EFE521.470e-4051.09stromal cell-derived factor 2-like n=1 Tax=Lepeoph... [more]
A0A0D2WV25_CAPO36.680e-4051.49Mannosyltransferase n=1 Tax=Capsaspora owczarzaki ... [more]
B7P701_IXOSC1.330e-3949.63Uncharacterized protein n=1 Tax=Ixodes scapularis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:220517..221702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166539|e_gw1.45.126.1
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1928@1|root,KOG3358@2759|Eukaryota
Evalue4.72e-56
Seed ortholog2880.D8LG55
Hectar predicted targeting categorysignal peptide
TranscriptId166861
TrackFilteredModels1
ProteinId166539
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166539gene_6058Tribonema minus UTEX_B_3156 geneContig_45 220517..221702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166539Trimin1|166539|e_gw1.45.126.1Tribonema minus UTEX_B_3156 polypeptideContig_45 220517..221702 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6058_3exon_6058_3Tribonema minus UTEX_B_3156 exonContig_45 220517..220636 -
exon_6058_2exon_6058_2Tribonema minus UTEX_B_3156 exonContig_45 221065..221197 -
exon_6058_1exon_6058_1Tribonema minus UTEX_B_3156 exonContig_45 221461..221702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6058CDS_6058Tribonema minus UTEX_B_3156 CDSContig_45 221461..221702 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6058 ID=mRNA_6058|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_45:220517..221702- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGGGTGGCAACTTTGTTCGCTCTGAGCGCGCTGGCGGGTCTAGC
AGCCGGGCGAGATGTAGAGGTCACTTGCGGTTCGACCGTTAAGCTGCAGC
ACGTGAAGACAGGTTACCAATTGCATTCGCACCAGGTGCGGTGGGGGGCG
GGCTCAGGGCAGCAGAGTGTCACTGCCAACGGCGCTGCGGACGACCAAGG
GGAGCTGTTTATTGTGAAGGAGCCGCACAATGGGCTGCCATGCGAGGCGG
GCACCGTGGTGAAGTGCGGCGGGATCGTGCGGCTGGAGCACATGTTTACG
CAGAAGAACCTGCACACGCACCGCTTCGTCAGCCCGCTGCTGAGGCTGCA
GGAGGTCTCTGCCTTCGGAGAGGAGGGCGACGGCGACAGCGGCGACAACT
GGGTAGTGGAATGCGTGGACCCCAGCTCTGGCAGCTGGCTGAAAGATGGC
AAGGTGAGCAGGCTGCACTTGAATCGCAGTTGCAGCACCCTGTGA
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protein sequence of jgi.p|Trimin1|166539

>Trimin1|166539|e_gw1.45.126.1 ID=Trimin1|166539|e_gw1.45.126.1|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
MARVATLFALSALAGLAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGA
GSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFT
QKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDG
KVSRLHLNRSCSTL*
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mRNA from alignment at Contig_45:220517..221702-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6058 ID=mRNA_6058|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1186bp|location=Sequence derived from alignment at Contig_45:220517..221702- (Tribonema minus UTEX_B_3156 )
ATGGCAAGGGTGGCAACTTTGTTCGCTCTGAGCGCGCTGGCGGGTCTAGC AGCCGGGCGAGATGTAGAGGTCACTTGCGGTTCGACCGTTAAGCTGCAGC ACGTGAAGACAGGTTACCAATTGCATTCGCACCAGGTGCGGTGGGGGGCG GGCTCAGGGCAGCAGAGTGTCACTGCCAACGGCGCTGCGGACGACCAAGG GGAGCTGTTTATTGTGAAGGAGCCGCACAATGGGCTGCCATGGTGAGTGC GAATGCGTCTAGGAGTTCAGTCCTGTTAGAGGGTCATCACTGCACATGCT TGTCCGGCATACACATTGGCGCCAGCCCTGATGCTCAAGCAGTTCAGAAA TGGATCTCTGTTGTCAGACGTTCATTTTCATAAGTGCGTGGAAAGTAGTG CAGCAGCGTGTTTGAGTTGACTGGTGCAACGAAGCTGGCTGAAACCTAGC TGCTCTGTGTTGCTCATGCATCGCCTCTGCCTACCCAATTGCAATCGCTG AGCAGCGAGGCGGGCACCGTGGTGAAGTGCGGCGGGATCGTGCGGCTGGA GCACATGTTTACGCAGAAGAACCTGCACACGCACCGCTTCGTCAGCCCGC TGCTGAGGCTGCAGGAGGTCTCTGCCTTCGGAGAGGAGGTGAGGCAGCAG GCGTTGTGCATCCGCAACACTCACTCAGTGCTTGGCGCACCGTGACTGCC ACGCTGCCACAGTCAGCTCTGCGTCAGGCGCCGCATGCAGACCCCGCCGC TTGCTCATCGCTGTAGCTTGTGCAAGTTCGCCAGCTGCCACAGAAGTGGT GCTACCGGCACATGACAGTTAAATGCTTGGGTAGCCAGGTTGTACAGATG AGCTTGCGGCAGCTCCAAGATGCAAACAGTATGGTCAGTTTATGAGCATT GGCACAGCTTCAGGATGAGACCAGAATGGCAAGTGGACTACGCATGTAGA CCCAAATACAGCACATATATACCCCAGCACTCATGTACAGCACTGCCGAC CCTCGCCAGCATCACTGTATGGATGCGTCGAACTCAAGTACCGTGGCCTT GTCGTGCTGTGCGCAGGGCGACGGCGACAGCGGCGACAACTGGGTAGTGG AATGCGTGGACCCCAGCTCTGGCAGCTGGCTGAAAGATGGCAAGGTGAGC AGGCTGCACTTGAATCGCAGTTGCAGCACCCTGTGA
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Coding sequence (CDS) from alignment at Contig_45:220517..221702-

>mRNA_6058 ID=mRNA_6058|Name=jgi.p|Trimin1|166539|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_45:220517..221702- (Tribonema minus UTEX_B_3156 )
ATGGCAAGGGTGGCAACTTTGTTCGCTCTGAGCGCGCTGGCGGGTCTAGC
AGCCGGGCGAGATGTAGAGGTCACTTGCGGTTCGACCGTTAAGCTGCAGC
ACGTGAAGACAGGTTACCAATTGCATTCGCACCAGGTGCGGTGGGGGGCG
GGCTCAGGGCAGCAGAGTGTCACTGCCAACGGCGCTGCGGACGACCAAGG
GGAGCTGTTTATTGTGAAGGAGCCGCACAATGGGCTGCCATGCGAGGCGG
GCACCGTGGTGAAGTGCGGCGGGATCGTGCGGCTGGAGCACATGTTTACG
CAGAAGAACCTGCACACGCACCGCTTCGTCAGCCCGCTGCTGAGGCTGCA
GGAGGTCTCTGCCTTCGGAGAGGAGGGCGACGGCGACAGCGGCGACAACT
GGGTAGTGGAATGCGTGGACCCCAGCTCTGGCAGCTGGCTGAAAGATGGC
AAGGTGAGCAGGCTGCACTTGAATCGCAGTTGCAGCACCCTGTGA
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