mRNA_6029 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA) HSP 1 Score: 576 bits (1484), Expect = 1.370e-206 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1 Query: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK 897 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK Sbjct: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK 299
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI) HSP 1 Score: 167 bits (424), Expect = 3.420e-46 Identity = 121/284 (42.61%), Postives = 148/284 (52.11%), Query Frame = 1 Query: 73 DVLELQVTRVA-PTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAA----ADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGN------KGEAGGKKAKAP--PAKSKLAKVNTKGMKSLATLFGKQ 885 ++LELQV R P SFF+ QAVQ DGAV+ A+RVDP LLLP++ RW PL Q + E L RHL ADK+CDVNDR+GPD +L R+NE LAWL +KV+R A GG A G A F AAP DA + A + RA LE VC+Y+ EWA ++A R L R KRK T WE E DRNL LS G+G + A KAK P A+ LAKVN KGMKS+++ FGK+ Sbjct: 18 NLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAXXXXXXXGAGFARDFQAIAAPMDARMQKEVEAECKQRA---------LEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRK---TVWEETAETDRNLELSHGSGGGQKAKTEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFFGKK 289
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.140e-30 Identity = 113/330 (34.24%), Postives = 162/330 (49.09%), Query Frame = 1 Query: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMT-ACKDRWIPLGQQLQEAR----LAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEG--MAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKA-------PATA-------WEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSK--------------LAKVNTKGMKSLATLFGKQ 885 + HPR+GE +K++ D+LELQ +V+ + + SFF+ +V+SD +++ TRVDP LLLLP + + R++PL Q + + LL+CRHL DKICDVND+LGP+ MLYRLNE K + WL KV+R HL A ADD GA + AAGF AP D +A AA+ +++ LR A+++V +Y W + A +LE K K PATA W+ D+ L + G G+ G A+ PAK K L K GMK++++ F K+ Sbjct: 47 LKHPRSGELLKYMA-------AGQDILELQ--KVSVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKICDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHL---ARVEPRADDPCGGAGDSASFAAGFQ---APR---TDASAGAADSGGVKKS--LRQAVQVVLEYTAERWRAPLLESLGLDEA-VLEPPSRKAAKSKQQGKADDEPATAGERRAQQWQDAATLDKALEYTQGLGSSG------AETDPAKKKQKLQATTRTTGNKKLTKGKVTGMKTISSFFQKK 349
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S3YG07_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG07_HETAK) HSP 1 Score: 118 bits (295), Expect = 9.000e-28 Identity = 88/243 (36.21%), Postives = 123/243 (50.62%), Query Frame = 1 Query: 73 DVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAW------LLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLD---GGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVI--DPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAA-LLEARGGGGIKRKAPATAWEAC-REEDRNLSLS 762 DV E+Q+ + + + SFFVGQAVQSDG Y+A+R+DP ++LP+ + R+ PL Q L +A + C HL ICDVNDRLGPD + YR+NEAK +AWL K+ +V HL G +H + G S + D+VI DP + A +++ +Y+ EW E+V + A L EA G +KRKA WEA E DR L+L+ Sbjct: 6 DVYEIQLLKAS--KYSSFFVGQAVQSDGNFYVASRIDPLFIVLPVFSKHGTRYSPLDQILSAGSVAGEHNFLQIASCNHLKLSNICDVNDRLGPDSIFYRINEAKVVAWLKMKIKQVYCHLKSEKGKSHMQVGGSFVRGFEATSKSTGSSSGSDTKDSVITTDPE--------------FKLAAKLIFEYICEEWQEKVLQSYSGLGAKDLEEASGAAPVKRKA----WEAPDAERDRLLALT 228
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.450e-21 Identity = 106/329 (32.22%), Postives = 154/329 (46.81%), Query Frame = 1 Query: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTAC-KDRWIPLGQQLQ-EARLAWLL--RCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGF-------SGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNK--------------------------GEAGGKKAKAPPAKSKLAKVNTKGMKSLATLF 876 HPR G ++LL P G L ELQ R + + F S+FV Q V SDG +Y+A+ VDP L+LLP++ R+ PL Q L EA A+L +C+ L +CDVND+LG D++LYRLN K + WL KV R L AA ++ N G G AAGF G + D A + A R R A+E+V +Y+ WA ++ R + E R G G K++ +AW+ + ++ +++L G + GG+ A+ KLAK N KG+KS+++ F Sbjct: 45 FTHPRGGYPSQYLLSPA----GQL--CELQSFRPSGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQGLDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVALE---AAREEQNNGMGSGFAAGFVVEAGAIQGGSTGEDKRSTGAGGKVQTREATREEA-RLAVELVSEYLSEAWAVKLQHR---CGFSEEEMRQGAGAKKR---SAWDGDGDLEQGTAMALTQGKRXXXXXXXXXXXXXXXXXXXXXXXXMRSAQGGQSL----AQKKLAKTNLKGVKSISSFF 353
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S3HJE8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJE8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.410e-14 Identity = 75/231 (32.47%), Postives = 113/231 (48.92%), Query Frame = 1 Query: 82 ELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQL-QEARLAWL--LRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACRE-EDRNLSLS 762 ELQ+T+ P + S+F+ Q V S +YMA DP L LP + ++ PL Q + +A+ A R ++CDVND+LG D++LYR NE K L WL KV+ A L A++ + A+GF+ + + AV+ +AAAA+ R ++ A+EI+ DY+ A+++ H A L +KRK T WE E E L+ S Sbjct: 3 ELQITQ--PRKYSSWFINQRVSSGQDIYMANVFDPRFLCLPFLEKSAGKYSPLDQIVFMDAKYARFPFTRASSWKLGEMCDVNDKLGDDMILYRYNEVKMLEWLGRKVENTAKALMKQRLARASSQNTT------FASGFNIS-KQSTAVVASSAAAADAVTPSREDIV-LAVEIISDYLTPSAAQKLLQAHSVNATDLSTKNASASLKRK---TDWEQELELEKETLAFS 220
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A5A8DTM3_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTM3_CAFRO) HSP 1 Score: 76.3 bits (186), Expect = 1.030e-11 Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 13 RTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAW--------LLR-CRHLGA-DKICDVNDRLGPDLMLYRLNEAKALAWLLSKV 396 R G V L H + ++ L+ VA S SFFVG ++ DG+ + T VDP LL+LP++ A + +P Q + W LLR C G ++CDV++R+GP ++LYRL+ K AWL K+ Sbjct: 38 RDGTGVTRLFGLGHPSGPAGPLVALEFRLVASDSPSSFFVGNSIVGDGSALLGTPVDPLLLVLPVLEASSAKLVPGSQLVDSVGATWGPAKAWSRLLRGCLGQGLLGRVCDVDERMGPSMLLYRLSLPKTRAWLRRKL 175
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: R1CCT5_EMIHU (RNase_H2-Ydr279 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CCT5_EMIHU) HSP 1 Score: 65.9 bits (159), Expect = 1.640e-8 Identity = 83/243 (34.16%), Postives = 110/243 (45.27%), Query Frame = 1 Query: 7 HPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDR------------WIPLGQQL--QEARLAWLLRCRHLGADK----ICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNA-----APNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAA 666 HPRT + + R + L+V + A S+ + Q VQ DGA+Y+AT +DP LLLLPL+ + + PL + EA L L R G + ICDVND+ G ++ RL++ L WL K + VAAHL AH AA+ AGA G A G A D PAAAA + A L TA +V +Y+P WA R+ A D AA Sbjct: 21 HPRTSDPMMLGRRA---DSAILEVHRHVPPKAAKASWLVAGLEQVVQ-DGALYLATPIDPLLLLLPLLERARGGASSLKRESSAGLYKPLSEAFGGDEAGLEQHLT-RLSGLSERLRAICDVNDKYGEPMV--RLSDPLVLGWLRRKAEAVAAHLR--AH---AAEQQAAGATAGAA----GRAMTQFDCEGDEAGAPAAAAHDAA-------LATACHLVGEYLPDGWAARLCASLDVPEAA 240
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: UPI00106D86B5 (ribonuclease H2 subunit B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D86B5) HSP 1 Score: 58.9 bits (141), Expect = 3.480e-6 Identity = 74/311 (23.79%), Postives = 129/311 (41.48%), Query Frame = 1 Query: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRH-LGADKICDVNDRLGP-DLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWE--ACREEDRNLSLSLGNGNKGEAGGKKAKAPP---------AKSKLAKVNTKGMKSLATLFGKQQKA 894 + HP+TG ++LL E + E+ P S+ F+ +V DG +Y T++D ++LP + + +++ L LQE+ + H + + +C V D G DL++ +LN K ++WL KV + L A + A + + + ++R L A +V DY+ W++++ A GI + ++ E AC++ + SL+ KAKA A+ LAKVNTKGMKS+++ FG +K+ Sbjct: 43 LPHPKTGHIQQYLLSKNKQE-----ISEILKFNETPRSW---FIDNSVLQDGNLYFGTKIDALFMVLPSLKSTSTKFMTLEHILQESDNNNICELSHCITKEDLCLVTDMKGEEDLIVCKLNHDKVISWLEKKVYQTEDQL--------------------KQASICTSGAQSSTFVR-----SSKSRGNTQDYLGYAFGLVSDYISDYWSQKLKASL--------------GINDEISGSSEEEPACKKVKLDESLAAKPNEDYSKFFAKAKATDQNTNVKLTAAQKSLAKVNTKGMKSISSFFGVPKKS 306
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A2P6U1T4_CHLSO (Ribonuclease H2 subunit B n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1T4_CHLSO) HSP 1 Score: 58.5 bits (140), Expect = 3.650e-6 Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 1 Query: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHL-------GADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHL 417 + P+TG+ +LL GS LQ + S+F+G+ VQ DG +++AT VDP LL+LPL+ + + + Q L++ HL G C + + YRLN+ + LAWL KVD+ A + Sbjct: 27 LPDPKTGQAAAYLLA------GSC----LQEINWFKQQYSSWFIGERVQQDGGLFLATPVDPLLLVLPLLEQARAQQ-NVFQDLEQILSMAASPSAHLLAPLLEQGGQLSCLCDAKAAGGQSYYRLNDDRVLAWLRLKVDQAKAAM 161
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A835YWZ7_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ7_9STRA) HSP 1 Score: 1137 bits (2941), Expect = 0.000e+0 Identity = 811/811 (100.00%), Postives = 811/811 (100.00%), Query Frame = 1 Query: 1 MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG 2433 MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG Sbjct: 1 MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG 811
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: D7G8K9_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K9_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 1.720e-5 Identity = 35/105 (33.33%), Postives = 47/105 (44.76%), Query Frame = 1 Query: 1624 RKRVPVLEWWRSQRLS----------------------------------VGPDSNGDE--WTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWF 1830 R PVL+WWRSQRL+ VG D+NG+E WT+ Q L++AQ T P + FW VA V G++ +C Q+WF Sbjct: 28 RGAAPVLDWWRSQRLTKTPSVGVVGAARFPLGQPSTGNHADMDSACRLKTVGRDANGEEEPWTKAQMHSLRRAQAETAPSTSAFWSAVACNVDGRNPQECQQKWF 132 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
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BLAST of jgi.p|Trimin1|349504 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6029 ID=mRNA_6029|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1021bp|location=Sequence derived from alignment at Contig_45:14045..16464+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCTCATCCGAGAACAGGCGAGAAGGTGAAGTGGCTGCTGAGACCAACback to top protein sequence of jgi.p|Trimin1|349504 >Trimin1|349504|estExt_Genemark1.C_Ctg_450002 ID=Trimin1|349504|estExt_Genemark1.C_Ctg_450002|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=300bp MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSback to top mRNA from alignment at Contig_45:14045..16464+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6029 ID=mRNA_6029|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2420bp|location=Sequence derived from alignment at Contig_45:14045..16464+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_45:14045..16464+ >mRNA_6029 ID=mRNA_6029|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=900bp|location=Sequence derived from alignment at Contig_45:14045..16464+ (Tribonema minus UTEX_B_3156 )back to top |