mRNA_6029 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349504
Unique NamemRNA_6029
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA)

HSP 1 Score: 576 bits (1484), Expect = 1.370e-206
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK 897
            MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK
Sbjct:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK 299          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.420e-46
Identity = 121/284 (42.61%), Postives = 148/284 (52.11%), Query Frame = 1
Query:   73 DVLELQVTRVA-PTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAA----ADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGN------KGEAGGKKAKAP--PAKSKLAKVNTKGMKSLATLFGKQ 885
            ++LELQV R   P    SFF+ QAVQ DGAV+ A+RVDP  LLLP++     RW PL Q + E     L   RHL ADK+CDVNDR+GPD +L R+NE   LAWL +KV+R        A GG      A         G A  F   AAP DA +     A  + RA         LE VC+Y+  EWA ++A R       L   R     KRK   T WE   E DRNL LS G+G       +  A   KAK P   A+  LAKVN KGMKS+++ FGK+
Sbjct:   18 NLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAXXXXXXXGAGFARDFQAIAAPMDARMQKEVEAECKQRA---------LEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRK---TVWEETAETDRNLELSHGSGGGQKAKTEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFFGKK 289          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.140e-30
Identity = 113/330 (34.24%), Postives = 162/330 (49.09%), Query Frame = 1
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMT-ACKDRWIPLGQQLQEAR----LAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEG--MAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKA-------PATA-------WEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSK--------------LAKVNTKGMKSLATLFGKQ 885
            + HPR+GE +K++           D+LELQ  +V+ + + SFF+  +V+SD  +++ TRVDP LLLLP +    + R++PL Q +  +        LL+CRHL  DKICDVND+LGP+ MLYRLNE K + WL  KV+R   HL   A     ADD   GA +    AAGF    AP     D +A AA+    +++  LR A+++V +Y    W   +        A +LE       K K        PATA       W+     D+ L  + G G+ G      A+  PAK K              L K    GMK++++ F K+
Sbjct:   47 LKHPRSGELLKYMA-------AGQDILELQ--KVSVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKICDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHL---ARVEPRADDPCGGAGDSASFAAGFQ---APR---TDASAGAADSGGVKKS--LRQAVQVVLEYTAERWRAPLLESLGLDEA-VLEPPSRKAAKSKQQGKADDEPATAGERRAQQWQDAATLDKALEYTQGLGSSG------AETDPAKKKQKLQATTRTTGNKKLTKGKVTGMKTISSFFQKK 349          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S3YG07_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG07_HETAK)

HSP 1 Score: 118 bits (295), Expect = 9.000e-28
Identity = 88/243 (36.21%), Postives = 123/243 (50.62%), Query Frame = 1
Query:   73 DVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAW------LLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLD---GGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVI--DPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAA-LLEARGGGGIKRKAPATAWEAC-REEDRNLSLS 762
            DV E+Q+ + +   + SFFVGQAVQSDG  Y+A+R+DP  ++LP+ +    R+ PL Q L    +A       +  C HL    ICDVNDRLGPD + YR+NEAK +AWL  K+ +V  HL    G +H                + G S  +   D+VI  DP                + A +++ +Y+  EW E+V   +    A  L EA G   +KRKA    WEA   E DR L+L+
Sbjct:    6 DVYEIQLLKAS--KYSSFFVGQAVQSDGNFYVASRIDPLFIVLPVFSKHGTRYSPLDQILSAGSVAGEHNFLQIASCNHLKLSNICDVNDRLGPDSIFYRINEAKVVAWLKMKIKQVYCHLKSEKGKSHMQVGGSFVRGFEATSKSTGSSSGSDTKDSVITTDPE--------------FKLAAKLIFEYICEEWQEKVLQSYSGLGAKDLEEASGAAPVKRKA----WEAPDAERDRLLALT 228          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.450e-21
Identity = 106/329 (32.22%), Postives = 154/329 (46.81%), Query Frame = 1
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTAC-KDRWIPLGQQLQ-EARLAWLL--RCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGF-------SGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNK--------------------------GEAGGKKAKAPPAKSKLAKVNTKGMKSLATLF 876
              HPR G   ++LL P     G L   ELQ  R + + F S+FV Q V SDG +Y+A+ VDP L+LLP++      R+ PL Q L  EA  A+L   +C+ L    +CDVND+LG D++LYRLN  K + WL  KV R    L       AA ++ N G   G AAGF        G +   D     A    +   A R    R A+E+V +Y+   WA ++  R      +  E R G G K++   +AW+   + ++  +++L  G +                             GG+      A+ KLAK N KG+KS+++ F
Sbjct:   45 FTHPRGGYPSQYLLSPA----GQL--CELQSFRPSGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQGLDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVALE---AAREEQNNGMGSGFAAGFVVEAGAIQGGSTGEDKRSTGAGGKVQTREATREEA-RLAVELVSEYLSEAWAVKLQHR---CGFSEEEMRQGAGAKKR---SAWDGDGDLEQGTAMALTQGKRXXXXXXXXXXXXXXXXXXXXXXXXMRSAQGGQSL----AQKKLAKTNLKGVKSISSFF 353          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S3HJE8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJE8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.410e-14
Identity = 75/231 (32.47%), Postives = 113/231 (48.92%), Query Frame = 1
Query:   82 ELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQL-QEARLAWL--LRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACRE-EDRNLSLS 762
            ELQ+T+  P  + S+F+ Q V S   +YMA   DP  L LP +     ++ PL Q +  +A+ A     R       ++CDVND+LG D++LYR NE K L WL  KV+  A  L       A++ +         A+GF+ +   + AV+  +AAAA+     R  ++  A+EI+ DY+    A+++   H   A  L        +KRK   T WE   E E   L+ S
Sbjct:    3 ELQITQ--PRKYSSWFINQRVSSGQDIYMANVFDPRFLCLPFLEKSAGKYSPLDQIVFMDAKYARFPFTRASSWKLGEMCDVNDKLGDDMILYRYNEVKMLEWLGRKVENTAKALMKQRLARASSQNTT------FASGFNIS-KQSTAVVASSAAAADAVTPSREDIV-LAVEIISDYLTPSAAQKLLQAHSVNATDLSTKNASASLKRK---TDWEQELELEKETLAFS 220          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A5A8DTM3_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTM3_CAFRO)

HSP 1 Score: 76.3 bits (186), Expect = 1.030e-11
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   13 RTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAW--------LLR-CRHLGA-DKICDVNDRLGPDLMLYRLNEAKALAWLLSKV 396
            R G  V  L    H    +  ++ L+   VA  S  SFFVG ++  DG+  + T VDP LL+LP++ A   + +P  Q +      W        LLR C   G   ++CDV++R+GP ++LYRL+  K  AWL  K+
Sbjct:   38 RDGTGVTRLFGLGHPSGPAGPLVALEFRLVASDSPSSFFVGNSIVGDGSALLGTPVDPLLLVLPVLEASSAKLVPGSQLVDSVGATWGPAKAWSRLLRGCLGQGLLGRVCDVDERMGPSMLLYRLSLPKTRAWLRRKL 175          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: R1CCT5_EMIHU (RNase_H2-Ydr279 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CCT5_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 1.640e-8
Identity = 83/243 (34.16%), Postives = 110/243 (45.27%), Query Frame = 1
Query:    7 HPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDR------------WIPLGQQL--QEARLAWLLRCRHLGADK----ICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNA-----APNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAA 666
            HPRT + +    R    +   L+V      + A  S+    + Q VQ DGA+Y+AT +DP LLLLPL+   +              + PL +     EA L   L  R  G  +    ICDVND+ G  ++  RL++   L WL  K + VAAHL   AH   AA+   AGA  G A    G A        D    PAAAA + A       L TA  +V +Y+P  WA R+ A  D   AA
Sbjct:   21 HPRTSDPMMLGRRA---DSAILEVHRHVPPKAAKASWLVAGLEQVVQ-DGALYLATPIDPLLLLLPLLERARGGASSLKRESSAGLYKPLSEAFGGDEAGLEQHLT-RLSGLSERLRAICDVNDKYGEPMV--RLSDPLVLGWLRRKAEAVAAHLR--AH---AAEQQAAGATAGAA----GRAMTQFDCEGDEAGAPAAAAHDAA-------LATACHLVGEYLPDGWAARLCASLDVPEAA 240          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: UPI00106D86B5 (ribonuclease H2 subunit B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D86B5)

HSP 1 Score: 58.9 bits (141), Expect = 3.480e-6
Identity = 74/311 (23.79%), Postives = 129/311 (41.48%), Query Frame = 1
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRH-LGADKICDVNDRLGP-DLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWE--ACREEDRNLSLSLGNGNKGEAGGKKAKAPP---------AKSKLAKVNTKGMKSLATLFGKQQKA 894
            + HP+TG   ++LL     E     + E+      P S+   F+  +V  DG +Y  T++D   ++LP + +   +++ L   LQE+    +    H +  + +C V D  G  DL++ +LN  K ++WL  KV +    L                      A    + A +   +      + ++R      L  A  +V DY+   W++++ A                GI  +   ++ E  AC++   + SL+            KAKA           A+  LAKVNTKGMKS+++ FG  +K+
Sbjct:   43 LPHPKTGHIQQYLLSKNKQE-----ISEILKFNETPRSW---FIDNSVLQDGNLYFGTKIDALFMVLPSLKSTSTKFMTLEHILQESDNNNICELSHCITKEDLCLVTDMKGEEDLIVCKLNHDKVISWLEKKVYQTEDQL--------------------KQASICTSGAQSSTFVR-----SSKSRGNTQDYLGYAFGLVSDYISDYWSQKLKASL--------------GINDEISGSSEEEPACKKVKLDESLAAKPNEDYSKFFAKAKATDQNTNVKLTAAQKSLAKVNTKGMKSISSFFGVPKKS 306          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A2P6U1T4_CHLSO (Ribonuclease H2 subunit B n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1T4_CHLSO)

HSP 1 Score: 58.5 bits (140), Expect = 3.650e-6
Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 1
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHL-------GADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHL 417
            +  P+TG+   +LL       GS     LQ        + S+F+G+ VQ DG +++AT VDP LL+LPL+   + +   + Q L++          HL       G    C  + +       YRLN+ + LAWL  KVD+  A +
Sbjct:   27 LPDPKTGQAAAYLLA------GSC----LQEINWFKQQYSSWFIGERVQQDGGLFLATPVDPLLLVLPLLEQARAQQ-NVFQDLEQILSMAASPSAHLLAPLLEQGGQLSCLCDAKAAGGQSYYRLNDDRVLAWLRLKVDQAKAAM 161          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A835YWZ7_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ7_9STRA)

HSP 1 Score: 1137 bits (2941), Expect = 0.000e+0
Identity = 811/811 (100.00%), Postives = 811/811 (100.00%), Query Frame = 1
Query:    1 MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG 2433
            MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG
Sbjct:    1 MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG 811          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: D7G8K9_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-5
Identity = 35/105 (33.33%), Postives = 47/105 (44.76%), Query Frame = 1
Query: 1624 RKRVPVLEWWRSQRLS----------------------------------VGPDSNGDE--WTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWF 1830
            R   PVL+WWRSQRL+                                  VG D+NG+E  WT+ Q   L++AQ  T P  + FW  VA  V G++  +C Q+WF
Sbjct:   28 RGAAPVLDWWRSQRLTKTPSVGVVGAARFPLGQPSTGNHADMDSACRLKTVGRDANGEEEPWTKAQMHSLRRAQAETAPSTSAFWSAVACNVDGRNPQECQQKWF 132          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835YS23_9STRA1.370e-206100.00Ribonuclease H2, subunit B n=1 Tax=Tribonema minus... [more]
D7FZK3_ECTSI3.420e-4642.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XY24_9STRA1.140e-3034.24Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japon... [more]
A0A7S3YG07_HETAK9.000e-2836.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9DAM5_9STRA2.450e-2132.22Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis ... [more]
A0A7S3HJE8_9STRA1.410e-1432.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5A8DTM3_CAFRO1.030e-1134.78Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
R1CCT5_EMIHU1.640e-834.16RNase_H2-Ydr279 domain-containing protein (Fragmen... [more]
UPI00106D86B53.480e-623.79ribonuclease H2 subunit B-like n=1 Tax=Dendronepht... [more]
A0A2P6U1T4_CHLSO3.650e-630.14Ribonuclease H2 subunit B n=1 Tax=Chlorella soroki... [more]

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BLAST of jgi.p|Trimin1|349504 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YWZ7_9STRA0.000e+0100.00Myb-like domain-containing protein n=1 Tax=Tribone... [more]
D7G8K9_ECTSI1.720e-533.33Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:14045..16464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349504|estExt_Genemark1.C_Ctg_450002
BRITEko00000,ko00001,ko00002,ko01000,ko03032
KEGG rclassRC00010,RC00074
KEGG ReactionR00571,R00573
KEGG ModuleM00052
KEGG Pathwayko00240,ko01100,ko03030,map00240,map01100,map03030
KEGG koko:K01937,ko:K10744
EC6.3.4.2
GOsGO:0000278,GO:0001701,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009117,GO:0009259,GO:0009636,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010389,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015036,GO:0016070,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032299,GO:0032501,GO:0032502,GO:0032991,GO:0033260,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0042127,GO:0042221,GO:0043009,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097237,GO:0098754,GO:0098869,GO:0140098,GO:1901135,GO:1901360,GO:1901361,GO:1901575,GO:1901576,GO:1901976,GO:1901987,GO:1901990,GO:1902749,GO:1902969,GO:1903047,GO:1903469,GO:1990748,GO:2000001,GO:2001020
Preferred nameRNASEH2B
DescriptionRNA catabolic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4705@1|root,KOG4705@2759|Eukaryota
Evalue1.78e-47
Seed ortholog2880.D7FZK3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease H2, subunit B
Ec32 orthologEc-01_010140.1
TranscriptId349826
TrackFilteredModels1
ProteinId349504
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349504gene_6029Tribonema minus UTEX_B_3156 geneContig_45 14045..16464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349504Trimin1|349504|estExt_Genemark1.C_Ctg_450002Tribonema minus UTEX_B_3156 polypeptideContig_45 14045..16343 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6029_1exon_6029_1Tribonema minus UTEX_B_3156 exonContig_45 14045..14063 +
exon_6029_2exon_6029_2Tribonema minus UTEX_B_3156 exonContig_45 14229..14436 +
exon_6029_3exon_6029_3Tribonema minus UTEX_B_3156 exonContig_45 14647..14741 +
exon_6029_4exon_6029_4Tribonema minus UTEX_B_3156 exonContig_45 15297..15500 +
exon_6029_5exon_6029_5Tribonema minus UTEX_B_3156 exonContig_45 15970..16464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6029CDS_6029Tribonema minus UTEX_B_3156 CDSContig_45 14045..14063 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6029UTR3_6029Tribonema minus UTEX_B_3156 three_prime_UTRContig_45 16344..16464 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6029 ID=mRNA_6029|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1021bp|location=Sequence derived from alignment at Contig_45:14045..16464+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATCCGAGAACAGGCGAGAAGGTGAAGTGGCTGCTGAGACCAAC
CCACGACGAACCAGGGAGCCTGGATGTGCTGGAGCTGCAGGTGACCAGGG
TGGCGCCCACGAGCTTCTGCAGCTTCTTCGTGGGGCAGGCGGTGCAGAGC
GACGGCGCCGTGTACATGGCGACGCGCGTGGACCCCGCGCTGCTGCTGCT
GCCGCTCATGACGGCGTGCAAAGACAGGTGGATTCCGTTGGGGCAGCAGC
TGCAGGAGGCGCGCTTGGCGTGGCTCTTGAGGTGCAGGCATCTCGGCGCG
GACAAGATCTGTGACGTCAACGACCGGCTCGGCCCCGACCTCATGCTGTA
CCGCCTGAACGAGGCAAAGGCGCTGGCGTGGCTGCTGAGCAAGGTGGACA
GAGTCGCGGCGCACCTGGACGGCGGCGCGCACGGCGGCGCCGCTGCTGAC
GATGCGAACGCCGGCGCTGTGGAGGGCATGGCGGCGGGGTTCAGCGGCAA
TGCGGCGCCGAATGATGCGGTGATTGACCCCGCCGCGGCCGCCGCGGAGC
GCGCGCGCGCGCGCCGCGCGCGGCTGCTGCGCACCGCGCTCGAGATCGTG
TGCGACTACGTGCCGGCGGAGTGGGCGGAGCGCGTCGCGGCGCGGCACGA
CGCGACGGCGGCGGCGCTGCTGGAGGCGCGCGGCGGCGGCGGCATCAAGC
GCAAGGCGCCTGCGACCGCATGGGAGGCGTGCCGGGAGGAGGACCGGAAC
CTGTCGCTGTCGCTGGGGAACGGGAACAAGGGGGAGGCGGGGGGGAAGAA
GGCGAAGGCGCCCCCCGCCAAGAGCAAGCTCGCCAAGGTCAACACCAAGG
GGATGAAGAGCCTCGCGACGCTGTTCGGGAAGCAGCAGAAGGCGAAATAG
CGCGCGCGGAGGGCGCCGCGCGTCGTGACGCTCTGGTGTGCTGCGTACAA
CAGTCTGTTGACCTTGAGATGTTATGCCTGTAAGCAGAGGTTGTCTAAAT
GTACGCTGATTTTACTGGTGA
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protein sequence of jgi.p|Trimin1|349504

>Trimin1|349504|estExt_Genemark1.C_Ctg_450002 ID=Trimin1|349504|estExt_Genemark1.C_Ctg_450002|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=300bp
MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQS
DGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGA
DKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAAD
DANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIV
CDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRN
LSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK*
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mRNA from alignment at Contig_45:14045..16464+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6029 ID=mRNA_6029|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2420bp|location=Sequence derived from alignment at Contig_45:14045..16464+ (Tribonema minus UTEX_B_3156 )
ATGGCTCATCCGAGAACAGGTACAGACGTTCGCGTTCGTGTATCTGCTAC ACAAGTCAGTCGTGAACGCTGCATTGTGTTCTGTTCTCTGGGACACACCA ACTTCAAATGCGTCCTCTTGAAACAAAAAGCTGCATGACACCTCGTCGCC TCGAATGTGGCTGATTTCATTGCTCGTGTCGCAGGCGAGAAGGTGAAGTG GCTGCTGAGACCAACCCACGACGAACCAGGGAGCCTGGATGTGCTGGAGC TGCAGGTGACCAGGGTGGCGCCCACGAGCTTCTGCAGCTTCTTCGTGGGG CAGGCGGTGCAGAGCGACGGCGCCGTGTACATGGCGACGCGCGTGGACCC CGCGCTGCTGCTGCTGCCGCTCATGACGGCGTGCAAAGACAGGTGCTCAC GACTGCGGCCGCGGCACTGGCAACAACATTCATCGCGTGTGTCGCGCCTC AGAGCCAGACCGAAAGCGCTGCATCTCCCCGCTGTGTGATGCGGTTGTGA CAGAGCTTGCCATTGGCTGTGCGCAGGCATGCGCGGCATTGCATCTGCTG ATGAAGCAACACCGTGATGTGGAATGCGCTGCTCGCTGCTCGGCCGGCGC AGGTGGATTCCGTTGGGGCAGCAGCTGCAGGAGGCGCGCTTGGCGTGGCT CTTGAGGTGCAGGCATCTCGGCGCGGACAAGATCTGTGACGTCAACGGTG CGTGCCGCGGTGAACAACTTGGGTGGCGGACATACTGTGCTTCAGTGTTC AGCGCTTTAATGATGGTGACCTCCTGTAGTCAAACATGCGCTGTCCACGC TGGAGAGGCCCGTTTGGCATTGTGCTTTCAGATACCGGCGTGGTGGCCAG GTACTCTGCATCTCCCAATCAGTGTAGAGAGAGCAGGCGTCTCGCATGCG TGCCGACAAGGCAGCGTCGGCACTGCCGCAGCTGCAGGAGATCGTCTGCT ACATACAGCTGACGCGGCGGCAGTCGATACCATGCGCATGGTTCGAGCTT CAATTTTGAGTCCTACAATAGCCTCTGCCAAGCATGCAGCACACTTGTGA GCTGTGCTGATGTGCCAGTTCCCCCAAACACGCGCATCGGTGGACATGAT CATAGGGCACTTCTACTGTACTATGCGCAAACACGCTTCACTCTTGCGTT GCATGCGAGAAGACTAAGTAGAGCGGACTGCGCCGCAGTGCGTCAGCGAC CACCTCCTTCCACATTCCCACATGGCACATCTTCGTCGTTTGTCCATCGC AGACCGGCTCGGCCCCGACCTCATGCTGTACCGCCTGAACGAGGCAAAGG CGCTGGCGTGGCTGCTGAGCAAGGTGGACAGAGTCGCGGCGCACCTGGAC GGCGGCGCGCACGGCGGCGCCGCTGCTGACGATGCGAACGCCGGCGCTGT GGAGGGCATGGCGGCGGGGTTCAGCGGCAATGCGGCGCCGAATGATGCGG TGATTGGTACGTGCCACTGGCATGCTCCGCTGCTCTTTGCGGAGGGGGAG GGGGGAAGACGGTCTTCGTTTGCGCAATGCTCAACGGTCGTGGAGGCGCA TGCAGTTATCACATCACGCGCATTGCTAATGTTGCAGGGTCGCGCTATCG ACCCGAGTGAATGAAATGATTGTAATGCAGCCAACCAGAGCATCACCGAC CATCAGGTCAACGAGGGTCGGCTGAACTTGCGGAAGACCCACGTTGACGC AGCGCCGCAGAGGCTGATGTCTACTCTGCGTATCAGGCAGAAGACAGCCC TCAGCAGAACACACACAGCACACGTCCCTGCTGTGCGCGTCCTGCACTTG TCACGCGGCGCGCTGCACTCATCGAACCCCCCCGGCCCCCCCTGCAAACC CCCACGACGCGCGCTGGCGGCTGACGCGGCGCCTCCCGCCGCTGCACCCC CCTGCTGCTGCGCTGCAACGCGCAGACCCCGCCGCGGCCGCCGCGGAGCG CGCGCGCGCGCGCCGCGCGCGGCTGCTGCGCACCGCGCTCGAGATCGTGT GCGACTACGTGCCGGCGGAGTGGGCGGAGCGCGTCGCGGCGCGGCACGAC GCGACGGCGGCGGCGCTGCTGGAGGCGCGCGGCGGCGGCGGCATCAAGCG CAAGGCGCCTGCGACCGCATGGGAGGCGTGCCGGGAGGAGGACCGGAACC TGTCGCTGTCGCTGGGGAACGGGAACAAGGGGGAGGCGGGGGGGAAGAAG GCGAAGGCGCCCCCCGCCAAGAGCAAGCTCGCCAAGGTCAACACCAAGGG GATGAAGAGCCTCGCGACGCTGTTCGGGAAGCAGCAGAAGGCGAAATAGC GCGCGCGGAGGGCGCCGCGCGTCGTGACGCTCTGGTGTGCTGCGTACAAC AGTCTGTTGACCTTGAGATGTTATGCCTGTAAGCAGAGGTTGTCTAAATG TACGCTGATTTTACTGGTGA
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Coding sequence (CDS) from alignment at Contig_45:14045..16464+

>mRNA_6029 ID=mRNA_6029|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=900bp|location=Sequence derived from alignment at Contig_45:14045..16464+ (Tribonema minus UTEX_B_3156 )
ATGGCTCATCCGAGAACAGGCGAGAAGGTGAAGTGGCTGCTGAGACCAAC
CCACGACGAACCAGGGAGCCTGGATGTGCTGGAGCTGCAGGTGACCAGGG
TGGCGCCCACGAGCTTCTGCAGCTTCTTCGTGGGGCAGGCGGTGCAGAGC
GACGGCGCCGTGTACATGGCGACGCGCGTGGACCCCGCGCTGCTGCTGCT
GCCGCTCATGACGGCGTGCAAAGACAGGTGGATTCCGTTGGGGCAGCAGC
TGCAGGAGGCGCGCTTGGCGTGGCTCTTGAGGTGCAGGCATCTCGGCGCG
GACAAGATCTGTGACGTCAACGACCGGCTCGGCCCCGACCTCATGCTGTA
CCGCCTGAACGAGGCAAAGGCGCTGGCGTGGCTGCTGAGCAAGGTGGACA
GAGTCGCGGCGCACCTGGACGGCGGCGCGCACGGCGGCGCCGCTGCTGAC
GATGCGAACGCCGGCGCTGTGGAGGGCATGGCGGCGGGGTTCAGCGGCAA
TGCGGCGCCGAATGATGCGGTGATTGACCCCGCCGCGGCCGCCGCGGAGC
GCGCGCGCGCGCGCCGCGCGCGGCTGCTGCGCACCGCGCTCGAGATCGTG
TGCGACTACGTGCCGGCGGAGTGGGCGGAGCGCGTCGCGGCGCGGCACGA
CGCGACGGCGGCGGCGCTGCTGGAGGCGCGCGGCGGCGGCGGCATCAAGC
GCAAGGCGCCTGCGACCGCATGGGAGGCGTGCCGGGAGGAGGACCGGAAC
CTGTCGCTGTCGCTGGGGAACGGGAACAAGGGGGAGGCGGGGGGGAAGAA
GGCGAAGGCGCCCCCCGCCAAGAGCAAGCTCGCCAAGGTCAACACCAAGG
GGATGAAGAGCCTCGCGACGCTGTTCGGGAAGCAGCAGAAGGCGAAATAG
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