mRNA_6022 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144030
Unique NamemRNA_6022
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A835Z4W2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W2_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.960e-56
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 234
            WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA
Sbjct:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 78          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A836CND7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.340e-30
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231
            WA +++ +PGR AKQCRERY+NHLDP L++ PWTPEEE  L+  C   N  WAE+ R+ PGRSYNDVKNRY L++RR
Sbjct:   42 WALVARSMPGRVAKQCRERYLNHLDPKLQRGPWTPEEEQVLLRLCEGQNRQWAEICRQLPGRSYNDVKNRYNLIQRR 118          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.000e-27
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231
            WA+I  H+PGR  KQCRERY+NHLDPSL+K PWTPEE+A L     + N  WA++ R+ PGR  NDVKNR+ L++RR
Sbjct:   78 WAQICMHMPGRVGKQCRERYLNHLDPSLKKTPWTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNRWNLIQRR 154          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.180e-25
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRK-APWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231
            W++++KH+PGR AKQCRERY+NHLDPSLRK  PWT +EEA L+  C      WAE+ R+  GRSYNDVKNR+ L++RR
Sbjct: 1056 WSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 1133          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 5.920e-25
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRK-APWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231
            W+++++H+PGR AKQCRERY+NHLDPSLRK  PWT +EEA L+  C      WAE+ R+  GRSYNDV+NR+ L++RR
Sbjct:  318 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQRR 395          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.610e-24
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231
            W++IS H+PGR  KQCRERY+NHLDPSLR  PWT EEE  L++     N  WAE+ R+ PGRS NDVKNR+ L+ RR
Sbjct:  649 WSQISDHMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRR 725          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.630e-24
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231
            W++IS H+PGR  KQCRERY+NHLDPSLR  PWT EEE  L++     N  WAE+ R+ PGRS NDVKNR+ L+ RR
Sbjct: 1037 WSQISDHMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRR 1113          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A836CML2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.770e-23
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 234
            W +I+K LPGR AKQ R RY NHLDP L KAPWTPEE+  LV     T   WA + R  PGRS NDVKNR++ +ER A
Sbjct:   56 WKKIAKLLPGRSAKQARTRYTNHLDPRLTKAPWTPEEDQLLVETVEGTGAGWAVIARSMPGRSDNDVKNRWHTIERYA 133          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A7S1G6Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6Z8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.330e-23
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 234
            W  ++  +PGR AKQCRER++N+LDP L+K PW+PEE+A LVA  +E   HW+E+ +  PGR  N VKNR+Y +  R+
Sbjct:  120 WGRVAASIPGRTAKQCRERWVNNLDPQLKKTPWSPEEDAILVAKQKEIGNHWSEIAQFLPGRPDNSVKNRWYCMINRS 197          
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A1E7EVM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.910e-23
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYY 216
            WA+I+ HLPGR  KQCRER++NHLDP L+K  WT +EEA L+A        WA + ++ PGRS NDVKN +Y
Sbjct:   54 WAKIAAHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIAMHELHGNRWANISKQLPGRSDNDVKNHWY 125          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4W2_9STRA1.960e-56100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A836CND7_9STRA1.340e-3062.34Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YSH7_9STRA1.000e-2759.74Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A6H5JMK3_9PHAE1.180e-2561.54MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FJZ9_ECTSI5.920e-2558.97Putative c-myb-like transcription factor n=1 Tax=E... [more]
D7G0Z5_ECTSI3.610e-2461.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2W7_9PHAE3.630e-2461.04MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A836CML2_9STRA1.770e-2358.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1G6Z8_9STRA2.330e-2351.28Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1E7EVM5_9STRA2.910e-2355.56Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:1022011..1022244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144030|gw1.33.106.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue9.7e-26
Seed ortholog2880.D7FJZ9
Hectar predicted targeting categoryother localisation
TranscriptId144352
TrackFilteredModels1
ProteinId144030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144030gene_6022Tribonema minus UTEX_B_3156 geneContig_33 1022011..1022244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6022_1exon_6022_1Tribonema minus UTEX_B_3156 exonContig_33 1022011..1022244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6022CDS_6022Tribonema minus UTEX_B_3156 CDSContig_33 1022011..1022244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144030Trimin1|144030|gw1.33.106.1Tribonema minus UTEX_B_3156 polypeptideContig_33 1022011..1022244 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6022 ID=mRNA_6022|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:1022011..1022244- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGGCCGAGATCTCCAAACACCTCCCCGGCCGCGACGCCAAGCAGTGCCG
CGAGCGCTACATCAACCACCTCGACCCATCCCTCCGCAAGGCGCCTTGGA
CGCCAGAAGAGGAGGCCGCGCTAGTGGCGCACTGCCGCGAGACCAACTGC
CACTGGGCGGAGGTCTGGCGGCGCTTTCCGGGGCGGTCGTACAACGACGT
GAAGAACAGGTACTACCTGCTGGAGCGGCGCGCG
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protein sequence of jgi.p|Trimin1|144030

>Trimin1|144030|gw1.33.106.1 ID=Trimin1|144030|gw1.33.106.1|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNC
HWAEVWRRFPGRSYNDVKNRYYLLERRA
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mRNA from alignment at Contig_33:1022011..1022244-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6022 ID=mRNA_6022|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:1022011..1022244- (Tribonema minus UTEX_B_3156 )
TGGGCCGAGATCTCCAAACACCTCCCCGGCCGCGACGCCAAGCAGTGCCG CGAGCGCTACATCAACCACCTCGACCCATCCCTCCGCAAGGCGCCTTGGA CGCCAGAAGAGGAGGCCGCGCTAGTGGCGCACTGCCGCGAGACCAACTGC CACTGGGCGGAGGTCTGGCGGCGCTTTCCGGGGCGGTCGTACAACGACGT GAAGAACAGGTACTACCTGCTGGAGCGGCGCGCG
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Coding sequence (CDS) from alignment at Contig_33:1022011..1022244-

>mRNA_6022 ID=mRNA_6022|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_33:1022011..1022244- (Tribonema minus UTEX_B_3156 )
TGGGCCGAGATCTCCAAACACCTCCCCGGCCGCGACGCCAAGCAGTGCCG
CGAGCGCTACATCAACCACCTCGACCCATCCCTCCGCAAGGCGCCTTGGA
CGCCAGAAGAGGAGGCCGCGCTAGTGGCGCACTGCCGCGAGACCAACTGC
CACTGGGCGGAGGTCTGGCGGCGCTTTCCGGGGCGGTCGTACAACGACGT
GAAGAACAGGTACTACCTGCTGGAGCGGCGCGCG
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