mRNA_601 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|157030
Unique Name	mRNA_601
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: A0A835Z3Q6_9STRA (HNHc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q6_9STRA)

HSP 1 Score: 319 bits (818), Expect = 9.710e-111
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query:    1 MVDAEQHWCVRAHPSAFVGGVSGYSVSQFGGWVQFPTGQFSNGHQQHGRHSIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATGPCYNRREQQARARDGTLPPPPRTHVLSQRDEDTDVSV 447
            MVDAEQHWCVRAHPSAFVGGVSGYSVSQFGGWVQFPTGQFSNGHQQHGRHSIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATGPCYNRREQQARARDGTLPPPPRTHVLSQRDEDTDVSV
Sbjct:    1 MVDAEQHWCVRAHPSAFVGGVSGYSVSQFGGWVQFPTGQFSNGHQQHGRHSIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATGPCYNRREQQARARDGTLPPPPRTHVLSQRDEDTDVSV 149

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: A0A835Z5J3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.430e-36
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 1

Query:   46 AFVGGVSGYSVSQFGGWVQFPTGQFSNGHQQH-GRHSIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATGPCYNRR 354
            AF+ G  GYSVSQFGGWV+ PTG+ S GH+++ GR  I IG   Y V+RLVA  HL P DDP KT+VNH+DGNPSN+++ NLEWVT GEN RHA ATG C NRR
Sbjct:  190 AFINGAVGYSVSQFGGWVKLPTGRLSQGHKRYDGRRKIGIGTNVYLVYRLVASAHLAPADDPTKTMVNHIDGNPSNSNYRNLEWVTAGENIRHAQATGLCKNRR 293

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: A0A835YZ13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ13_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.980e-25
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1

Query:   46 AFVGGVSGYSVSQFGGWVQFPTGQFSNGHQQHG-RHSIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFT 282
            AF+ G  GYSVSQFGGWV+ PTG+ S GH+++  RH+I IG K Y V+RLVA  HL P DDP KT+VNH+DGN SN+D+T
Sbjct:  148 AFINGAVGYSVSQFGGWVKLPTGKLSQGHKRYDTRHTIGIGNKSYLVYRLVASAHLAPPDDPTKTMVNHIDGNASNSDYT 227

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: A0A835YM77_9STRA (HNHc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM77_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.590e-15
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1

Query:  211 PPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATGPCYNRR 354
            PP DDPNKT+VNH+D NP NN+FTNLEWVT G N+RH H T  C  RR
Sbjct:    1 PPADDPNKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRR 48

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: A0A812ILR6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ILR6_9DINO)

HSP 1 Score: 72.4 bits (176), Expect = 4.670e-12
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1

Query:   91 GWVQFPTGQFSNGHQQ-HGRHSIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHAT 333
            G V   TG+  NG+    G     IGGK Y VHRLVA   L P  DPN   VNH+DG+PSNN  +NL++VT  EN RH+ AT
Sbjct:   41 GRVSNTTGKVHNGYLTCSGYRKARIGGKLYNVHRLVAAAFLGPPADPNCWQVNHLDGDPSNNHLSNLQYVTPAENQRHSWAT 122

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: UPI000AC1197C (HNH endonuclease n=1 Tax=Neglectibacter timonensis TaxID=1776382 RepID=UPI000AC1197C)

HSP 1 Score: 70.1 bits (170), Expect = 1.470e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1

Query:  169 KHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATG 336
            KH+YVHRLVA   +P  +  N  +VNH+DGNPSNND TNLEW T  EN +HA+ TG
Sbjct:   53 KHFYVHRLVAEAFIP--NPYNLPMVNHLDGNPSNNDVTNLEWCTAKENVQHAYRTG 106

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: UPI001952826D (helix-turn-helix domain-containing protein n=2 Tax=Mammaliicoccus sciuri TaxID=1296 RepID=UPI001952826D)

HSP 1 Score: 69.7 bits (169), Expect = 2.620e-11
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1

Query:  169 KHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATG 336
            KH+YVHRL+A   +P  +  NK  VNH DGNPSNND  NLEWVT  EN +HA+ TG
Sbjct:   60 KHFYVHRLLAQAFIP--NPLNKPQVNHKDGNPSNNDLNNLEWVTASENVQHAYDTG 113

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: A0A2H4FQU5_9CAUD (HNH endonuclease n=32 Tax=root TaxID=1 RepID=A0A2H4FQU5_9CAUD)

HSP 1 Score: 66.6 bits (161), Expect = 1.080e-10
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1

Query:   91 GWVQFPTGQFSNGHQQHGRHSIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATG 336
            G  Q   G++       GR    IG K  + HR+VA T LP  +  NK  VNH+DGNP NN+  NLEW T  EN +HA+ATG
Sbjct:   36 GSTQLRKGRWLKPKINQGRVLYNIGAKWTFAHRIVAMTFLPNPE--NKPQVNHIDGNPLNNNVNNLEWCTQSENIKHAYATG 115

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: A0A8F0WBL5_9CAUD (Uncharacterized protein n=1 Tax=CrAss-like virus sp. TaxID=2831617 RepID=A0A8F0WBL5_9CAUD)

HSP 1 Score: 65.5 bits (158), Expect = 1.790e-10
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1

Query:  154 IMIGGKHYY--VHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATG 336
            + + G  YY  VHRLVA T++P  D  NK +VNH DGN SNN +TNLEWV+  ENN HA   G
Sbjct:   42 LNVEGNVYYKRVHRLVAETYIPNPD--NKLMVNHKDGNKSNNHYTNLEWVSGSENNIHAIRNG 102

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BLAST of jgi.p|Trimin1|157030 vs. uniprot
Match: UPI001F0B9423 (HNH endonuclease n=1 Tax=Bacillus albus TaxID=2026189 RepID=UPI001F0B9423)

HSP 1 Score: 63.5 bits (153), Expect = 4.950e-10
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1

Query:  169 KHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATG 336
            KH  VHRLVA   +P  +   K  VNH DGN +NND +NLEWVT  EN +HAH TG
Sbjct:   11 KHIAVHRLVAKAFIP--NPAGKPQVNHKDGNKTNNDISNLEWVTASENIKHAHVTG 64

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|157030 vs. uniprot

BLAST of jgi.p|Trimin1|157030 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z3Q6_9STRA	9.710e-111	100.00	HNHc domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835Z5J3_9STRA	2.430e-36	64.42	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YZ13_9STRA	9.980e-25	62.50	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YM77_9STRA	5.590e-15	68.75	HNHc domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A812ILR6_9DINO	4.670e-12	51.22	Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP...	[more]
UPI000AC1197C	1.470e-11	60.71	HNH endonuclease n=1 Tax=Neglectibacter timonensis...	[more]
UPI001952826D	2.620e-11	60.71	helix-turn-helix domain-containing protein n=2 Tax...	[more]
A0A2H4FQU5_9CAUD	1.080e-10	46.34	HNH endonuclease n=32 Tax=root TaxID=1 RepID=A0A2H...	[more]
A0A8F0WBL5_9CAUD	1.790e-10	55.56	Uncharacterized protein n=1 Tax=CrAss-like virus s...	[more]
UPI001F0B9423	4.950e-10	57.14	HNH endonuclease n=1 Tax=Bacillus albus TaxID=2026...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_2	contig	Contig_2:699155..699604 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|157030\|e_gw1.2.21.1
Description	HNH endonuclease
COG category	L
Max annot lvl	91061\|Bacilli
EggNOG OGs	2DR9Y@1\|root,33AUY@2\|Bacteria,1VEP1@1239\|Firmicutes,4HIWW@91061\|Bacilli,4GZZG@90964\|Staphylococcaceae
Evalue	5.18e-10
Seed ortholog	861530.ALOZ01000074_gene990
Hectar predicted targeting category	other localisation
TranscriptId	157352
Track	FilteredModels1
ProteinId	157030

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|157030	gene_601	Tribonema minus UTEX_B_3156	gene	Contig_2 699155..699604 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_601_1	exon_601_1	Tribonema minus UTEX_B_3156	exon	Contig_2 699155..699604 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_601	CDS_601	Tribonema minus UTEX_B_3156	CDS	Contig_2 699155..699604 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|157030	Trimin1\|157030\|e_gw1.2.21.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_2 699155..699604 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_2:699155..699604-
coding sequence from alignment at Contig_2:699155..699604-

spliced messenger RNA

>mRNA_601 ID=mRNA_601|Name=jgi.p|Trimin1|157030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=450bp|location=Sequence derived from alignment at Contig_2:699155..699604- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACGCCGAGCAACACTGGTGCGTTCGGGCCCATCCATCTGCGTT
CGTCGGAGGCGTATCTGGATACAGTGTCAGCCAGTTCGGAGGCTGGGTTC
AATTTCCAACTGGTCAGTTTTCAAATGGTCATCAGCAACATGGTCGACAC
AGCATCATGATTGGGGGGAAACACTATTATGTGCACCGACTGGTGGCCCA
CACCCACCTTCCACCTACTGATGACCCGAACAAGACCATCGTCAATCACA
TGGACGGCAATCCCAGCAACAACGATTTCACAAACCTTGAGTGGGTTACA
ACAGGCGAGAACAACAGGCACGCGCACGCGACGGGACCCTGTTACAACAG
GCGAGAACAACAGGCACGCGCACGCGACGGGACTCTGCCACCACCGCCCC
GTACACATGTACTCTCTCAGAGGGACGAAGACACGGACGTTTCTGTCTGA

protein sequence of jgi.p|Trimin1|157030

>Trimin1|157030|e_gw1.2.21.1 ID=Trimin1|157030|e_gw1.2.21.1|Name=jgi.p|Trimin1|157030|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=150bp
MVDAEQHWCVRAHPSAFVGGVSGYSVSQFGGWVQFPTGQFSNGHQQHGRH
SIMIGGKHYYVHRLVAHTHLPPTDDPNKTIVNHMDGNPSNNDFTNLEWVT
TGENNRHAHATGPCYNRREQQARARDGTLPPPPRTHVLSQRDEDTDVSV*

mRNA from alignment at Contig_2:699155..699604-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_601 ID=mRNA_601|Name=jgi.p|Trimin1|157030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=450bp|location=Sequence derived from alignment at Contig_2:699155..699604- (Tribonema minus UTEX_B_3156 )
ATGGTGGACGCCGAGCAACACTGGTGCGTTCGGGCCCATCCATCTGCGTT
CGTCGGAGGCGTATCTGGATACAGTGTCAGCCAGTTCGGAGGCTGGGTTC
AATTTCCAACTGGTCAGTTTTCAAATGGTCATCAGCAACATGGTCGACAC
AGCATCATGATTGGGGGGAAACACTATTATGTGCACCGACTGGTGGCCCA
CACCCACCTTCCACCTACTGATGACCCGAACAAGACCATCGTCAATCACA
TGGACGGCAATCCCAGCAACAACGATTTCACAAACCTTGAGTGGGTTACA
ACAGGCGAGAACAACAGGCACGCGCACGCGACGGGACCCTGTTACAACAG
GCGAGAACAACAGGCACGCGCACGCGACGGGACTCTGCCACCACCGCCCC
GTACACATGTACTCTCTCAGAGGGACGAAGACACGGACGTTTCTGTCTGA

Coding sequence (CDS) from alignment at Contig_2:699155..699604-

>mRNA_601 ID=mRNA_601|Name=jgi.p|Trimin1|157030|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=450bp|location=Sequence derived from alignment at Contig_2:699155..699604- (Tribonema minus UTEX_B_3156 )
ATGGTGGACGCCGAGCAACACTGGTGCGTTCGGGCCCATCCATCTGCGTT
CGTCGGAGGCGTATCTGGATACAGTGTCAGCCAGTTCGGAGGCTGGGTTC
AATTTCCAACTGGTCAGTTTTCAAATGGTCATCAGCAACATGGTCGACAC
AGCATCATGATTGGGGGGAAACACTATTATGTGCACCGACTGGTGGCCCA
CACCCACCTTCCACCTACTGATGACCCGAACAAGACCATCGTCAATCACA
TGGACGGCAATCCCAGCAACAACGATTTCACAAACCTTGAGTGGGTTACA
ACAGGCGAGAACAACAGGCACGCGCACGCGACGGGACCCTGTTACAACAG
GCGAGAACAACAGGCACGCGCACGCGACGGGACTCTGCCACCACCGCCCC
GTACACATGTACTCTCTCAGAGGGACGAAGACACGGACGTTTCTGTCTGA