mRNA_6002 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348973
Unique NamemRNA_6002
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348973 vs. uniprot
Match: A0A835YX20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX20_9STRA)

HSP 1 Score: 429 bits (1104), Expect = 8.840e-149
Identity = 234/255 (91.76%), Postives = 234/255 (91.76%), Query Frame = 2 
Query:  371 MSHEARRGAARVRRRAGGRQDSXXXXXXXXXXXXXXXXXXXXXKCMLRDLLNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCKRMRVE 1135
            MSHEARRGAARVRRRAGGRQDS                     KCMLRDLLNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCKRMRVE
Sbjct:    1 MSHEARRGAARVRRRAGGRQDSAAVEMDRAKEAAAASTAAMIAKCMLRDLLNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCKRMRVE 255
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BLAST of jgi.p|Trimin1|348973 vs. uniprot
Match: A0A835YWN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWN1_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.670e-70
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 2 
Query:    2 SQYVTFAGLRACSALGLLGPCCHXXXXXXWSKSLKRVGGDAGDRPPKLPGYLELAAMWDELRTENTVQFYRGAFGAYEVDDFSGYRVRRVAELLGRGGAPAAVKMEREKEAAAASTAAMIA 364
            SQYVTFAGLRACSALGLLGPCCHXXXXXXWSKSLKRVGGDAGDRPPKLPGYLELAAMWDELRTENTVQFYRGAFGAYEVDDFSGYRVRRVAELLGRGGAPAAVKMEREKEAAAASTAAMIA
Sbjct:  167 SQYVTFAGLRACSALGLLGPCCHXXXXXXWSKSLKRVGGDAGDRPPKLPGYLELAAMWDELRTENTVQFYRGAFGAYEVDDFSGYRVRRVAELLGRGGAPAAVKMEREKEAAAASTAAMIA 287
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BLAST of jgi.p|Trimin1|348973 vs. uniprot
Match: A0A835YMX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.760e-27
Identity = 73/154 (47.40%), Postives = 91/154 (59.09%), Query Frame = 2 
Query:  608 AVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLR 1069
            A+ +AA    N  GAR LLEAGM  +V+ LD D+Q ++LAY SG + L+FVLDNICSIFPRVP  ML   VA L PP  DD        D      P+ P +     MQAV+ +FD++ S   A  L  R+EP+I IQ A R   ARRC  +LR
Sbjct:  237 ALHMAAIAYGNVAGARTLLEAGMVGEVSYLDGDVQLLKLAYFSGAEPLQFVLDNICSIFPRVPHYMLATVVAHLTPPTYDDVCYEDGAYD------PLAPRVHDAAAMQAVLHSFDVEMSFANACALRKRKEPVIIIQCAVRAALARRCATVLR 384
[Close]
BLAST of jgi.p|Trimin1|348973 vs. uniprot
Match: A0A836CG35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG35_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.680e-17
Identity = 66/170 (38.82%), Postives = 89/170 (52.35%), Query Frame = 2 
Query:  650 ARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLR---------RRGRLRHALWEVDTQCKRMRV 1132
            A IL+ AGM  +   LD +++ + LAY SG D L+FVLDNICSI P VP S L   + Q  PP R+D        D  D   P+ P       MQ+++ NF+L  S ERA  L   +EP++ IQ+ AR + A     LLR            R R  + +V+  CKRMR+
Sbjct:  667 AHILVRAGMVRESGILDHNIRLLDLAYMSGPDILKFVLDNICSICPDVPVSELVADMVQRGPPTRND----VGYIDDDDGMDPLAPRQFDVTVMQSILHNFNLGESKERAQVLLRMKEPVVLIQSVARRYLAHLRAMLLRMLPDNLFDSEHSRRRLTILKVNETCKRMRL 832
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348973 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YX20_9STRA8.840e-14991.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWN1_9STRA1.670e-70100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMX2_9STRA6.760e-2747.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG35_9STRA1.680e-1738.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:889794..893254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348973|estExt_Genemark1.C_Ctg_330116
Hectar predicted targeting categoryother localisation
TranscriptId349295
TrackFilteredModels1
ProteinId348973
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348973gene_6002Tribonema minus UTEX_B_3156 geneContig_33 889794..893254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348973Trimin1|348973|estExt_Genemark1.C_Ctg_330116Tribonema minus UTEX_B_3156 polypeptideContig_33 889794..892884 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6002_3exon_6002_3Tribonema minus UTEX_B_3156 exonContig_33 889794..890294 -
exon_6002_2exon_6002_2Tribonema minus UTEX_B_3156 exonContig_33 890591..890729 -
exon_6002_1exon_6002_1Tribonema minus UTEX_B_3156 exonContig_33 892757..893254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6002CDS_6002Tribonema minus UTEX_B_3156 CDSContig_33 892757..892884 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6002UTR5_6002Tribonema minus UTEX_B_3156 five_prime_UTRContig_33 892885..893254 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6002 ID=mRNA_6002|Name=jgi.p|Trimin1|348973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1138bp|location=Sequence derived from alignment at Contig_33:889794..893254- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCAATACGTAACCTTCGCGGGCCTGCGCGCGTGCTCCGCGCTCGGCC
TCCTCGGCCCCTGCTGCCACTGCTGCCCGTGCAACCCCTGGAGCAAGTCG
TTGAAGAGGGTGGGGGGGGACGCTGGCGACCGCCCCCCCAAGCTCCCGGG
GTACCTGGAGCTGGCCGCCATGTGGGACGAGCTGCGCACGGAGAACACGG
TGCAGTTCTACCGCGGCGCGTTCGGCGCGTACGAGGTCGACGACTTCAGC
GGCTACCGCGTGCGCCGCGTTGCGGAGCTGCTCGGGCGCGGCGGCGCGCC
CGCGGCCGTCAAGATGGAGCGCGAGAAGGAGGCCGCGGCGGCGAGCACTG
CTGCCATGATAGCTTGAGTCATGAGTCATGAGGCGCGTCGCGGAGCTGCT
CGGGTGCGGCGGCGCGCCGGCGGCCGTCAAGATTCGGCGGCCGTCGAGAT
GGACCGCGCGAAGGAGGCGGCGGCGGCGAGCACTGCTGCCATGATAGCGA
AGTGCATGCTCCGCGACCTCCTCAATGATCGACGCAGCAACGAGAGTTTC
ATGGTGGCGGTGCTGGAGAGAACGCTGGGGCGGTACGACGAGGGACTCGA
CAGATTCGCGGTAGCAGTTGCGGCACGCGACAGCAAGAACACGGTCGGCG
CGCGCATCCTGCTCGAGGCCGGCATGGCCGAGCAAGTCGCCGACCTTGAC
TGCGACCTGCAGTTCATGCAGCTGGCTTACCACTCCGGCGTGGACACTCT
CCGGTTCGTCCTCGACAACATCTGCAGCATCTTCCCACGGGTCCCCCGGT
CCATGCTGCAGCTGACGGTCGCGCAACTTGTTCCGCCGAGGCGCGACGAT
GAAGATGACGACGAGGATAGTGACGACTCGGTTGATACGGACCAGCCTGT
CGGACCGGAGCTCCGCCACGACGACAAGATGCAGGCAGTCGTGAGCAACT
TCGACCTGCAGCGGAGCGCCGAAAGGGCGGCCGAACTTGCGGGGCGACGC
GAACCTATCATCACCATCCAGAACGCGGCGCGCGTGTGGCGGGCGCGCCG
CTGCGTCGCTCTCCTGCGCAGGCGCGGGCGCCTTCGCCACGCATTGTGGG
AAGTCGACACGCAGTGCAAGCGCATGCGCGTTGAGTGA
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protein sequence of jgi.p|Trimin1|348973

>Trimin1|348973|estExt_Genemark1.C_Ctg_330116 ID=Trimin1|348973|estExt_Genemark1.C_Ctg_330116|Name=jgi.p|Trimin1|348973|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp
MSHEARRGAARVRRRAGGRQDSAAVEMDRAKEAAAASTAAMIAKCMLRDL
LNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEA
GMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTV
AQLVPPRRDDEDDDEDSDDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSA
ERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCK
RMRVE*
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mRNA from alignment at Contig_33:889794..893254-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6002 ID=mRNA_6002|Name=jgi.p|Trimin1|348973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3461bp|location=Sequence derived from alignment at Contig_33:889794..893254- (Tribonema minus UTEX_B_3156 )
CAGCCAATACGTAACCTTCGCGGGCCTGCGCGCGTGCTCCGCGCTCGGCC
TCCTCGGCCCCTGCTGCCACTGCTGCCCGTGCAACCCCTGGAGCAAGTCG
TTGAAGAGGGTGGGGGGGGACGCTGGCGACCGCCCCCCCAAGCTCCCGGG
GTACCTGGAGCTGGCCGCCATGTGGGACGAGCTGCGCACGGAGAACACGG
TGCAGTTCTACCGCGGCGCGTTCGGCGCGTACGAGGTCGACGACTTCAGC
GGCTACCGCGTGCGCCGCGTTGCGGAGCTGCTCGGGCGCGGCGGCGCGCC
CGCGGCCGTCAAGATGGAGCGCGAGAAGGAGGCCGCGGCGGCGAGCACTG
CTGCCATGATAGCTTGAGTCATGAGTCATGAGGCGCGTCGCGGAGCTGCT
CGGGTGCGGCGGCGCGCCGGCGGCCGTCAAGATTCGGCGGCCGTCGAGAT
GGACCGCGCGAAGGAGGCGGCGGCGGCGAGCACTGCTGCCATGATAGCGT
GAGTCTGACTCATGAGTCGTGCGACGCGTCGCGCGGAGCTGCGGGGGCAG
GGCGGCGCGCCGACGGCCATCGAGAAGGATCGCGAGAAAGCGGCAATGAG
CGCTGCCGCCATAGGTCGACTCGGGGATTGCGAGTCTGGGTCAGGATTCG
GGGCCAGGCGGAGGCAGCGCGTTGCGCGCCGGTGGCGCTTCATGAGCTGC
AACTCGGCGCAGCGCTTCAGTGTGTGCATGCGCCGTTGGCCATCAAGATG
AAGCGCGAGAAGGGGGTGGCGATGGCGAGCGCTGCCGCAGTGGCTCGAGT
CAGAGTCACGAGTCTCGGGCTTTGGGCGGCGACGTCGCGTGCTCTGTCGC
CGGCGACGCTGCCGCACCTTTTTTGCTGAGTGTGTGCTGGCGCTGCCACT
GGACACGGCGATTTCACTGTTCCTTATTGTGCGTGTGCCGGTGGGCATCG
AGGTTGCAGCTAGAAGAGCACTGCCGCGGTAGCTTAACATGGCATTTTGT
CAGGACAGTTGGTGGCAGCGCATCGGACGGCTAGTGCTCAAGTTCTTGGA
GCGCACTCTGCAGTATGAGACTCTGAGTGACGTGCCCATAGGCAGCGAAA
CCACTTCGGAATCTGCACATGGCAGGAGTCCCGAGAGCTTGGGCGTTTCG
ACTCATTTTGTCATGTAGGCCATGGTAGGTACAGTGGTAGTAAAGGTTAG
CCCATTGCAATCTTTAAGCGCGTGGAGCGCCAGGCAAGTCATTTACACGA
GTCTTCCATCTCAGTGTATGTGACATGTCTGAGCTCAGCATATGCAATGG
AATCAGCAAGACACCATGCATGCGCATACAGATCTCTCATTGTCACTGGC
ACCTGCATGATTGAGGCCGTTGTGATGTAATAGAGTGCATCGCCGTCCGC
AACATGTGGCGAGGTGGTTGTCGGCACCTGGCATCGCAAAGCACAACTGA
ATGCTCTGTCCTGTGAGCACACAAGACTTGAGGATATATCAATGAGTTGG
AGACACACGCTTGAACAGCCTAACAGCTCCTGCTGAGTGGTGGTGGTGGT
GTGGCTCAGAGGTGGGGCCGATACTCCATAGCACTTGAGATGCTGGATGA
TGCGAAGGTGGAACCTCATCAGGGGTGGCAGTCGTGCTTCAGACCTCGAG
ACTTGTGGGGTGAGAGACCATGAGCTGATGCCAGTTGAGGGTGGACATGT
CCATCTGACTCAGACCAGAGTTTTTGCATGAACATGATCCAAAGTCAAAC
CCTAATCCTCGGGCATGTGCCTTATATGGTCAATCTGAGTTGCGTTGTAT
TGACAGCACCTAGATGCAAAGACCTCGAAATAGTTGCTTTGCAATTGCAT
AAGTTCCAGCTAAGAATCTGTCAAGTTTTGCGGAACGATCATAAAAATGT
GCTCATTGGTGATTCCGCAACCACCTTTTGGGCATTTGTAGGTGTGACTG
ATGTGCTTCCAGTTCCCTCTTTGGCGCACGGTGTCTCTTTTGCTGCCTCC
AGTGCCCCCTGCTTCCTCTGCTGCTGTGCAGGCAGTGGTGGAGCTGTCTG
CATGGCCAGCTTTTCAACATGTTTTTTGCAATACAGCACCCGTGATGTGA
AATGTCCACACAGTGTGTGACCAGACACAATGCTCTTGTGATCCTGTCAT
AGGCTGTATTACCGTGCTGCACTCTCTTTTCTCCCGCCCGCAGGCTTGTC
TGAGTATGCAGAGAGGATTGCATACTATCAAGTTCCATTGTCCTGATTTC
AAGTTCAGATTTCAAGGAGCTTTGACTGGGGGATGGTGCAATATGGACAA
TCATGCTTCTGCTACAAATCTGGTACGGGGTACGGGTCGTTTAGAAAGTG
CGTTACTGGACGGTTACAGCCTGACGTTGTGACTGTTCATGATCACGCAA
AGCCCAGCACCCACGGTGTGGCACATCATGGTCCCGGCGCACATCATGGC
TTTCAATAAGGCCGCCAGTGCTCGCGACGCAGATGCAGCTGTATGTGCTT
TAATCGGTGCTCCGCCCAAAGACAGGAAGTGCATGCTCCGCGACCTCCTC
AATGATCGACGCAGCAACGAGAGTTTCATGGTGGCGGTGCTGGAGAGAAC
GCTGGGGCGGTACGACGAGGGACTCGACAGATTCGCGGTAGCAGTTGCGG
CACGCGACAGCAAGGTGAGTCGCCCTGTGCACCTGCGCCAAGAACAGCTA
GCGGCAAAGCTCCATTTCCTTGTAATGACCCCGGTTACGTGTCGTCGCTC
TTTCCTGGGCAGAACCGACTGCTGCGGTGGTTGGTGCATACAAGGGGGGT
GCGCCGCAGTGGCGACGCCAACATAAGCGCAATCGCGTGCCTTCGTGAGG
GCAACTCGCTGCTGGGATGGCTGGTGTGTACGAGTGGCACTCGTTGTCAT
GCCGCTGTGGTGACGGCGGGAGTGACCTTCAACGCGTTCGCCTGCGCCAT
CGCGTATCAGAACACGGTCGGCGCGCGCATCCTGCTCGAGGCCGGCATGG
CCGAGCAAGTCGCCGACCTTGACTGCGACCTGCAGTTCATGCAGCTGGCT
TACCACTCCGGCGTGGACACTCTCCGGTTCGTCCTCGACAACATCTGCAG
CATCTTCCCACGGGTCCCCCGGTCCATGCTGCAGCTGACGGTCGCGCAAC
TTGTTCCGCCGAGGCGCGACGATGAAGATGACGACGAGGATAGTGACGAC
TCGGTTGATACGGACCAGCCTGTCGGACCGGAGCTCCGCCACGACGACAA
GATGCAGGCAGTCGTGAGCAACTTCGACCTGCAGCGGAGCGCCGAAAGGG
CGGCCGAACTTGCGGGGCGACGCGAACCTATCATCACCATCCAGAACGCG
GCGCGCGTGTGGCGGGCGCGCCGCTGCGTCGCTCTCCTGCGCAGGCGCGG
GCGCCTTCGCCACGCATTGTGGGAAGTCGACACGCAGTGCAAGCGCATGC
GCGTTGAGTGA
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Coding sequence (CDS) from alignment at Contig_33:889794..893254-

>mRNA_6002 ID=mRNA_6002|Name=jgi.p|Trimin1|348973|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_33:889794..893254- (Tribonema minus UTEX_B_3156 )
ATGAGTCATGAGGCGCGTCGCGGAGCTGCTCGGGTGCGGCGGCGCGCCGG
CGGCCGTCAAGATTCGGCGGCCGTCGAGATGGACCGCGCGAAGGAGGCGG
CGGCGGCGAGCACTGCTGCCATGATAGCGAAGTGCATGCTCCGCGACCTC
CTCAATGATCGACGCAGCAACGAGAGTTTCATGGTGGCGGTGCTGGAGAG
AACGCTGGGGCGGTACGACGAGGGACTCGACAGATTCGCGGTAGCAGTTG
CGGCACGCGACAGCAAGAACACGGTCGGCGCGCGCATCCTGCTCGAGGCC
GGCATGGCCGAGCAAGTCGCCGACCTTGACTGCGACCTGCAGTTCATGCA
GCTGGCTTACCACTCCGGCGTGGACACTCTCCGGTTCGTCCTCGACAACA
TCTGCAGCATCTTCCCACGGGTCCCCCGGTCCATGCTGCAGCTGACGGTC
GCGCAACTTGTTCCGCCGAGGCGCGACGATGAAGATGACGACGAGGATAG
TGACGACTCGGTTGATACGGACCAGCCTGTCGGACCGGAGCTCCGCCACG
ACGACAAGATGCAGGCAGTCGTGAGCAACTTCGACCTGCAGCGGAGCGCC
GAAAGGGCGGCCGAACTTGCGGGGCGACGCGAACCTATCATCACCATCCA
GAACGCGGCGCGCGTGTGGCGGGCGCGCCGCTGCGTCGCTCTCCTGCGCA
GGCGCGGGCGCCTTCGCCACGCATTGTGGGAAGTCGACACGCAGTGCAAG
CGCATGCGCGTTGAGTGA
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