Trimin1|348973|estExt_Genemark1.C_Ctg_330116 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348973
Unique NameTrimin1|348973|estExt_Genemark1.C_Ctg_330116
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length256
Homology
BLAST of jgi.p|Trimin1|348973 vs. uniprot
Match: A0A835YX20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX20_9STRA)

HSP 1 Score: 468 bits (1204), Expect = 4.440e-166
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MSHEARRGAARVRRRAGGRQDSAAVEMDRAKEAAAASTAAMIAKCMLRDLLNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCKRMRVE 255
            MSHEARRGAARVRRRAGGRQDSAAVEMDRAKEAAAASTAAMIAKCMLRDLLNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCKRMRVE
Sbjct:    1 MSHEARRGAARVRRRAGGRQDSAAVEMDRAKEAAAASTAAMIAKCMLRDLLNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCKRMRVE 255          
BLAST of jgi.p|Trimin1|348973 vs. uniprot
Match: A0A835YMX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.050e-28
Identity = 73/154 (47.40%), Postives = 91/154 (59.09%), Query Frame = 0
Query:   80 AVAVAARDSKNTVGARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLR 233
            A+ +AA    N  GAR LLEAGM  +V+ LD D+Q ++LAY SG + L+FVLDNICSIFPRVP  ML   VA L PP  DD        D      P+ P +     MQAV+ +FD++ S   A  L  R+EP+I IQ A R   ARRC  +LR
Sbjct:  237 ALHMAAIAYGNVAGARTLLEAGMVGEVSYLDGDVQLLKLAYFSGAEPLQFVLDNICSIFPRVPHYMLATVVAHLTPPTYDDVCYEDGAYD------PLAPRVHDAAAMQAVLHSFDVEMSFANACALRKRKEPVIIIQCAVRAALARRCATVLR 384          
BLAST of jgi.p|Trimin1|348973 vs. uniprot
Match: A0A836CG35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG35_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.550e-18
Identity = 66/170 (38.82%), Postives = 89/170 (52.35%), Query Frame = 0
Query:   94 ARILLEAGMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTVAQLVPPRRDDEDXXXXXXDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSAERAAELAGRREPIITIQNAARVWRARRCVALLR---------RRGRLRHALWEVDTQCKRMRV 254
            A IL+ AGM  +   LD +++ + LAY SG D L+FVLDNICSI P VP S L   + Q  PP R+D        D  D   P+ P       MQ+++ NF+L  S ERA  L   +EP++ IQ+ AR + A     LLR            R R  + +V+  CKRMR+
Sbjct:  667 AHILVRAGMVRESGILDHNIRLLDLAYMSGPDILKFVLDNICSICPDVPVSELVADMVQRGPPTRND----VGYIDDDDGMDPLAPRQFDVTVMQSILHNFNLGESKERAQVLLRMKEPVVLIQSVARRYLAHLRAMLLRMLPDNLFDSEHSRRRLTILKVNETCKRMRL 832          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348973 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YX20_9STRA4.440e-166100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMX2_9STRA4.050e-2847.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG35_9STRA1.550e-1838.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:889794..892884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348973mRNA_6002Tribonema minus UTEX_B_3156 mRNAContig_33 889794..893254 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348973|estExt_Genemark1.C_Ctg_330116 ID=Trimin1|348973|estExt_Genemark1.C_Ctg_330116|Name=jgi.p|Trimin1|348973|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp
MSHEARRGAARVRRRAGGRQDSAAVEMDRAKEAAAASTAAMIAKCMLRDL
LNDRRSNESFMVAVLERTLGRYDEGLDRFAVAVAARDSKNTVGARILLEA
GMAEQVADLDCDLQFMQLAYHSGVDTLRFVLDNICSIFPRVPRSMLQLTV
AQLVPPRRDDEDDDEDSDDSVDTDQPVGPELRHDDKMQAVVSNFDLQRSA
ERAAELAGRREPIITIQNAARVWRARRCVALLRRRGRLRHALWEVDTQCK
RMRVE*
back to top