mRNA_5890 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|58800
Unique Name	mRNA_5890
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|58800 vs. uniprot
Match: A0A836CDZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ8_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 5.460e-145
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 2

Query:   74 MTGSERAAAAAAAVEARWMHGATIKPGCLAMLRDDVVPAVVATEGLRGLKLETAVTGHEAYVVTLSLPDPQREGQWVRAKAAAYAAVQATCKVYPLFPLEFKPYQKDLVGEEFGHGPGPALRQQMSGEQFKEWLSKNVDEGLHPLGKAWDTGVTLRDIVNAFTAPTATVATFLAFVERATAAERQLSPMQRCALFEVAFSKAGIYFGEAP 703
            MTGSERAAAAAAAVEARWMHGATIKPGCLAMLRDDVVPAVVATEGLRGLKLETAVTGHEAYVVTLSLPDPQREGQWVRAKAAAYAAVQATCKVYPLFPLEFKPYQKDLVGEEFGHGPGPALRQQMSGEQFKEWLSKNVDEGLHPLGKAWDTGVTLRDIVNAFTAPTATVATFLAFVERATAAERQLSPMQRCALFEVAFSKAGIYFGEAP
Sbjct:    1 MTGSERAAAAAAAVEARWMHGATIKPGCLAMLRDDVVPAVVATEGLRGLKLETAVTGHEAYVVTLSLPDPQREGQWVRAKAAAYAAVQATCKVYPLFPLEFKPYQKDLVGEEFGHGPGPALRQQMSGEQFKEWLSKNVDEGLHPLGKAWDTGVTLRDIVNAFTAPTATVATFLAFVERATAAERQLSPMQRCALFEVAFSKAGIYFGEAP 210

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|58800 vs. uniprot

BLAST of jgi.p|Trimin1|58800 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CDZ8_9STRA	5.460e-145	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:32322..36018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|58800\|CE58799_53
Hectar predicted targeting category	other localisation
TranscriptId	59122
Track	FilteredModels1
ProteinId	58800

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|58800	gene_5890	Tribonema minus UTEX_B_3156	gene	Contig_33 32322..36018 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|58800	Trimin1\|58800\|CE58799_53	Tribonema minus UTEX_B_3156	polypeptide	Contig_33 33139..35791 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5890_1	exon_5890_1	Tribonema minus UTEX_B_3156	exon	Contig_33 32322..32335 +
exon_5890_2	exon_5890_2	Tribonema minus UTEX_B_3156	exon	Contig_33 33080..33157 +
exon_5890_3	exon_5890_3	Tribonema minus UTEX_B_3156	exon	Contig_33 33905..34210 +
exon_5890_4	exon_5890_4	Tribonema minus UTEX_B_3156	exon	Contig_33 34581..34763 +
exon_5890_5	exon_5890_5	Tribonema minus UTEX_B_3156	exon	Contig_33 35667..36018 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_5890	UTR5_5890	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_33 32322..32335 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5890	CDS_5890	Tribonema minus UTEX_B_3156	CDS	Contig_33 33139..33157 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5890	UTR3_5890	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_33 35792..36018 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_33:32322..36018+
coding sequence from alignment at Contig_33:32322..36018+

spliced messenger RNA

>mRNA_5890 ID=mRNA_5890|Name=jgi.p|Trimin1|58800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_33:32322..36018+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGCAAGGTCGATGGCACGGCGAGCAACAAGCCCGGCGAGGTGCAGTTGG
GTGAGCGCAAGCGCAAGCAGCGGATGACTGGGAGTGAACGCGCCGCTGCC
GCAGCGGCCGCCGTGGAGGCGCGTTGGATGCACGGCGCCACGATCAAACC
GGGTTGTTTGGCAATGCTCCGCGACGATGTTGTGCCAGCGGTGGTCGCCA
CGGAGGGGCTGCGCGGCCTCAAGCTGGAGACGGCGGTGACTGGGCACGAA
GCCTACGTGGTGACTCTATCCCTGCCCGACCCGCAGCGAGAGGGGCAATG
GGTGCGCGCCAAGGCAGCCGCGTACGCCGCCGTCCAGGCCACATGCAAGG
TGTACCCGCTTTTCCCCCTGGAATTCAAGCCGTACCAGAAGGACCTAGTT
GGAGAAGAGTTCGGCCATGGCCCGGGGCCTGCCTTGAGGCAGCAGATGTC
CGGGGAGCAGTTCAAGGAGTGGCTCTCCAAAAACGTCGACGAGGGTCTAC
ATCCCCTGGGAAAGGCGTGGGACACTGGTGTCACCTTGCGCGACATTGTC
AACGCGTTCACCGCGCCCACCGCCACCGTGGCCACATTTCTGGCGTTCGT
GGAGCGTGCCACAGCGGCGGAGAGGCAACTGTCACCCATGCAGCGGTGTG
CGCTCTTCGAAGTGGCCTTCAGCAAGGCCGGCATCTATTTTGGAGAGGCA
CCGTGATCGGTCTGGCACCAGCGCTGGCGTCGAGGGGGCGGCGAAGGCAG
GGGGGGGCAGCATGCGGCCATATGGGTGGGAAGGGTGAAGAATGTGATTA
GCAGGAGGGGTGCGCGTCGGCAGCAGCGGGGGTGCGGGGGCGTGCGTACA
AGAGCGGCAAGAAATAAACGGTGAATGCGAAAGTGTACATAGATGTATCA
GCGAATGTGGGCTACGCCAATGACTGATGGGAC

protein sequence of jgi.p|Trimin1|58800

>Trimin1|58800|CE58799_53 ID=Trimin1|58800|CE58799_53|Name=jgi.p|Trimin1|58800|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp
MTGSERAAAAAAAVEARWMHGATIKPGCLAMLRDDVVPAVVATEGLRGLK
LETAVTGHEAYVVTLSLPDPQREGQWVRAKAAAYAAVQATCKVYPLFPLE
FKPYQKDLVGEEFGHGPGPALRQQMSGEQFKEWLSKNVDEGLHPLGKAWD
TGVTLRDIVNAFTAPTATVATFLAFVERATAAERQLSPMQRCALFEVAFS
KAGIYFGEAP*

mRNA from alignment at Contig_33:32322..36018+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5890 ID=mRNA_5890|Name=jgi.p|Trimin1|58800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3697bp|location=Sequence derived from alignment at Contig_33:32322..36018+ (Tribonema minus UTEX_B_3156 )
CGGCAAGGTCGATGGTGAGATGATGCGCTGGTGGGGGAGATGGCTCTGAA
GGCTGATCGTTGCTATGTCACGCGCTGCAGGTGCTGCTGCTGGTTCGCAA
TTGTATTTGGCAGCGGCGGCGGTGGCAGCGTTCATGAAAGGGGCGCATCA
CGGCTCAGCGCGAGCAGTGCTAGTGTTGAAGTTGCATGTGATTGAGGCTG
AACTACAACCATGAACTTCAACCATTTGCTGGGTCTGCGCGCGATTGCGA
AGCATCTCTTTCTACGTGTTTCAACTCTGGTGCGTCGCGTCGACAGCGCA
TCTATATATCACTATCAGTAGCATGTACATGAGGCGCACTCTGTCACTGA
AGTCATCTGTGCATGGGCGCCTCTATTCGAAGCTCTGTCGTGCATGACTT
CAACATGGCGGTGGCGCTGCTTACTGAGGATTTGCGCCCACGAAGCACGT
CAGGCTGCCACTGCTCCAGCTAACATGTGTACAACAGAATTGCACGGAGT
ACGCGCTGGTGCAGGTGGCTGCCGAGTGCGCTCTGCTGCGCATGTGACTC
TAAAGCAGTGCTCTGCGCGTGATCTGGAGCGCGCACATGTCGTCAATGCA
TCCCTTCCAGACATGATAGCCACCCGAGAGGGCGACAAGCGCATTTGCAT
AGCACTTGGCGTACCAACCGGGATTGCAGCGTGATGCCAGGGTGGACCGG
AGGTGAGATGCACACTGCTCACTCTGCTTCTGTGCAATGATGATGTGTTT
CCCCGCAGGCACGGCGAGCAACAAGCCCGGCGAGGTGCAGTTGGGTGAGC
GCAAGCGCAAGCAGCGGATGACTGGGAGTGAACGCGGTGAGTTACGTCCG
TGGAGTGCGTTCAGCTGTGTGCGGCCAGGTGTTGTCAATGCAACGCATCT
CGGTACCTGCACGACATTGTGCGCCAGTCTCCAAATGTATGTGTGCCGTG
TGTGTAGCTGCTACCAGCCGCTATCGACTACCCGACCCGCTCCTACCTCA
ACCCATCAATGACCCGTGATGCCATGAGAAAGGGTGTGCCCCCTAACTCC
CACACTAACCCAAGTAGCCCACCATGGTTGGCTAGTACAAGCAGAGCAAG
GCGCGAAGGCTTCAAGAGTTTTAACTTCAACCAATGCTGGGCGTTTATTT
CGCGCGTGCACACCAGCAGCAGCAGCAGCGCTCACACGGCACAGCGCTCA
TGAAAGGGGCGCATCGCGGCTCAGCGCTCATGTTGAAGTTGCATGTATTT
GAGGTTGAACTTCAACAATGATTTCGCTCGGTGTGCGGGTTAGGTTAGGG
TTAGGGTGGGAATTAGGTTAGGTTTAGGGTGAGGTTGATGTCGTCGGCTG
AGTTAGCCATACATGGGCCGTGAGGGGGACGCAGCGCTCCAAGCGGCTGT
GAAGAGGAGCGCCGATGGTGAGCTGTCAGGCATTCGGCACAGCACTGACA
CTGGCTGATGTTGATGCCTGCCGCCGCTGAGCCTTCAAATTGGCATTGTG
GCATCTGACTCAATAATTGTCACGTGTGGCGCCTGTGCACCGGACCTGAC
ACACTGCGCTGCCGTGCCTCTGTTGCCGCTCAGCCGCTGCCGCAGCGGCC
GCCGTGGAGGCGCGTTGGATGCACGGCGCCACGATCAAACCGGGTTGTTT
GGCAATGCTCCGCGACGATGTTGTGCCAGCGGTGGTCGCCACGGAGGGGC
TGCGCGGCCTCAAGCTGGAGACGGCGGTGACTGGGCACGAAGCCTACGTG
GTGACTCTATCCCTGCCCGACCCGCAGCGAGAGGGGCAATGGGTGCGCGC
CAAGGCAGCCGCGTACGCCGCCGTCCAGGCCACATGCAAGGTGTACCCGC
TTTTCCCCCTGGAATTCAAGCCGTACCAGAAGGACCTAGGTGAGTCTACG
TCAGCACGAAGCTCTAATCCCTGCATAGCAAGCTATTTTTAATATATCAT
GGGCCTGTGCGGTATGGTATGGTCGGCAATTCTTTGTGCTGGTCGAAAAG
AGGCCAGCCCGCGTGTCTGGCAGTTTTAACTTGCAGCCAACATCAGATGA
CGTTCTTCGGGCACACACATAGGGTTGCACTATCACCAGCAGTACAGTCA
TCGTGTGTTTTGTTTGTGCTGCATCTTGTATCGAGTCGACAGTAGCTGTG
CATGCTCAGCATTTTTATAAATACATAGCAGAGTGCTGCATCCACTTGGC
GGCTGATACACAAGCTTCAACGCTTCAAACTGAAGTCGGTGTTGAATTTG
CCCATGCAGTTGGAGAAGAGTTCGGCCATGGCCCGGGGCCTGCCTTGAGG
CAGCAGATGTCCGGGGAGCAGTTCAAGGAGTGGCTCTCCAAAAACGTCGA
CGAGGGTCTACATCCCCTGGGAAAGGCGTGGGACACTGGTGTCACCTTGC
GCGACATTGTCAACGCGTTCACCGCGCCCACCGCCACCGTGGGTGAGTGT
CAATCCTTTGTTTTAGTGTCAGATGCCTTTCTTCGCATAAATTTTCGGCC
TGGATTCAAGCATGAGAAGGCGTTTGATTCACTGATGCACGTGCGCATTC
GTAGCGCTCCTGCTTGGGCTCCGCGAATGCACGTGGGAGTGGTGTAAGGA
CGCATTTACCTACTCCAGGGTCACAACGGTGCACGCACGGGCCAGCGAGG
GCAGTCCCTCTATTGACAGGGTTGCACGTTGATCATAGAAGAGGTGTTCA
ACCAGATCACTCTGCGCTGCTGTATAGTTTTTTTTCAAACAATGTTGCGT
ACCCTAACCCTACGTGCATGTGCTGTGCCGATGCCACAGTGTCTCCTGGT
GCTGCATTTCTATCACAGTGACTGCCTTGCTTTTAGTGCAACATTCAAAA
TCTGAGTATGCTGCTAGCCTCATGACGCCTTTGATATGACGAGGCTTTGG
CAAATTGACCATGCAGGCTCAATGTTGCTGAGGGTGGGTTTAGATGGGCC
CCAAGGATGGCCCTCACACCAGCCCTGACCTCAATCTCCGCACCTCAGGC
ACTGACGCCACCCCAGCAAATGGCGCATCAGCATTCACCATCCCTCTTGC
AGCTTGTGCACATGGTGGTGCCATGTCAGTTTCTGCGGCAGCGCTCAACC
ATTACGTCTCCGCCGCGCACGTCAGATAGATCACTCCAGCACTCATGCAA
GTTCATACCTTGTGGACGCATGCATCCAATGCCTCGCTCTTTCTCGCAAC
AAACTTCAGGCACAGCTGCAACGCCTCACTCTCCGACACAACACAGGTTC
AGAGGCACAGCTGAGCACCAGCGCTTAAGGCTCAATACTGACGTGACCGC
ACACGCTGTCGTCCGCTGTTGCGCGCCGCCGCCATGGCTGCGCAGCCACA
TTTCTGGCGTTCGTGGAGCGTGCCACAGCGGCGGAGAGGCAACTGTCACC
CATGCAGCGGTGTGCGCTCTTCGAAGTGGCCTTCAGCAAGGCCGGCATCT
ATTTTGGAGAGGCACCGTGATCGGTCTGGCACCAGCGCTGGCGTCGAGGG
GGCGGCGAAGGCAGGGGGGGGCAGCATGCGGCCATATGGGTGGGAAGGGT
GAAGAATGTGATTAGCAGGAGGGGTGCGCGTCGGCAGCAGCGGGGGTGCG
GGGGCGTGCGTACAAGAGCGGCAAGAAATAAACGGTGAATGCGAAAGTGT
ACATAGATGTATCAGCGAATGTGGGCTACGCCAATGACTGATGGGAC

Coding sequence (CDS) from alignment at Contig_33:32322..36018+

>mRNA_5890 ID=mRNA_5890|Name=jgi.p|Trimin1|58800|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_33:32322..36018+ (Tribonema minus UTEX_B_3156 )
ATGACTGGGAGTGAACGCGCCGCTGCCGCAGCGGCCGCCGTGGAGGCGCG
TTGGATGCACGGCGCCACGATCAAACCGGGTTGTTTGGCAATGCTCCGCG
ACGATGTTGTGCCAGCGGTGGTCGCCACGGAGGGGCTGCGCGGCCTCAAG
CTGGAGACGGCGGTGACTGGGCACGAAGCCTACGTGGTGACTCTATCCCT
GCCCGACCCGCAGCGAGAGGGGCAATGGGTGCGCGCCAAGGCAGCCGCGT
ACGCCGCCGTCCAGGCCACATGCAAGGTGTACCCGCTTTTCCCCCTGGAA
TTCAAGCCGTACCAGAAGGACCTAGTTGGAGAAGAGTTCGGCCATGGCCC
GGGGCCTGCCTTGAGGCAGCAGATGTCCGGGGAGCAGTTCAAGGAGTGGC
TCTCCAAAAACGTCGACGAGGGTCTACATCCCCTGGGAAAGGCGTGGGAC
ACTGGTGTCACCTTGCGCGACATTGTCAACGCGTTCACCGCGCCCACCGC
CACCGTGGCCACATTTCTGGCGTTCGTGGAGCGTGCCACAGCGGCGGAGA
GGCAACTGTCACCCATGCAGCGGTGTGCGCTCTTCGAAGTGGCCTTCAGC
AAGGCCGGCATCTATTTTGGAGAGGCACCGTGA