mRNA_5833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160551
Unique NamemRNA_5833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A835ZC80_9STRA (PHD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC80_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.910e-65
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCXXXXXXXXXXXXXXXXXXXXXXYLVSN 348
            MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCXXXXXXXXXXXXXXXXXXXXXXYLVSN
Sbjct:    1 MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCXXXXXXXXXXXXXXXXXXXXXXYLVSN 116
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BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A1J1I765_9DIPT (CLUMA_CG008284, isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1I765_9DIPT)

HSP 1 Score: 59.7 bits (143), Expect = 5.630e-8
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   52 SQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            S+  E+L  CDSC AG+H  CL+PPL  PPEGSW C++C
Sbjct:  971 SENDERLLFCDSCDAGFHMYCLSPPLENPPEGSWDCKSC 1009
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BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A7S0MDS4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MDS4_9CRYP)

HSP 1 Score: 58.9 bits (141), Expect = 9.890e-8
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   61 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            +E++ +CD C AGWH DCL+PPL A P+G W C  C
Sbjct:  333 EEEMVLCDDCDAGWHLDCLSPPLSAVPDGDWLCPGC 368
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BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A0A9Z783_LYGHE (PHD and RING finger domain-containing protein 1 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z783_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   61 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  188 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 223
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BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A0A9Y9M1_LYGHE (PHD and RING finger domain-containing protein 1 n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y9M1_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 2.690e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   61 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  232 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 267
[Close]
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A146L8A2_LYGHE (PHD and RING finger domain-containing protein 1 n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L8A2_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 3.480e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   61 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  232 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 267
[Close]
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A0A9Y419_LYGHE (PHD and RING finger domain-containing protein 1 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y419_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 3.680e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   61 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  232 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 267
[Close]
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: UPI00158E97B0 (zinc finger protein ubi-d4 A isoform X3 n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158E97B0)

HSP 1 Score: 55.8 bits (133), Expect = 1.140e-6
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   67 KLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            +L  CD C  G+H  CL+PPL APPEGSW CR C
Sbjct:  367 QLLFCDDCDRGYHMYCLSPPLAAPPEGSWSCRLC 400
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BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A6P4Z5C2_BRABE (LOW QUALITY PROTEIN: zinc finger protein ubi-d4-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z5C2_BRABE)

HSP 1 Score: 55.8 bits (133), Expect = 1.140e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   52 SQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            S+  ++L  CD C  G+H  CL+PPL APPEGSW C+ C
Sbjct:  354 SENDDQLLFCDDCDRGYHMYCLSPPLSAPPEGSWICKLC 392
[Close]
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A7S0MA14_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MA14_9CRYP)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-6
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:   64 EKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 168
            E++ VCD C  G+H  CLTPPL+A P+G WRC  C
Sbjct:   21 EQMLVCDECDRGFHTYCLTPPLKAVPDGGWRCSEC 55
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZC80_9STRA3.910e-65100.00PHD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1J1I765_9DIPT5.630e-858.97CLUMA_CG008284, isoform A n=1 Tax=Clunio marinus T... [more]
A0A7S0MDS4_9CRYP9.890e-855.56Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0A9Z783_LYGHE2.100e-758.33PHD and RING finger domain-containing protein 1 (F... [more]
A0A0A9Y9M1_LYGHE2.690e-758.33PHD and RING finger domain-containing protein 1 n=... [more]
A0A146L8A2_LYGHE3.480e-758.33PHD and RING finger domain-containing protein 1 n=... [more]
A0A0A9Y419_LYGHE3.680e-758.33PHD and RING finger domain-containing protein 1 n=... [more]
UPI00158E97B01.140e-661.76zinc finger protein ubi-d4 A isoform X3 n=1 Tax=Ch... [more]
A0A6P4Z5C2_BRABE1.140e-653.85LOW QUALITY PROTEIN: zinc finger protein ubi-d4-li... [more]
A0A7S0MA14_9CRYP1.520e-657.14Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:996582..996932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160551|e_gw1.13.108.1
BRITEko00000,ko00001,ko03041
KEGG Pathwayko04714,ko05225,map04714,map05225
KEGG koko:K13196,ko:K22198
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000981,GO:0003007,GO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006915,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007507,GO:0007517,GO:0008150,GO:0008219,GO:0008270,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0012501,GO:0014706,GO:0015630,GO:0016043,GO:0016514,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0042393,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046872,GO:0046914,GO:0048513,GO:0048644,GO:0048729,GO:0048731,GO:0048738,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0055008,GO:0060255,GO:0060415,GO:0060537,GO:0061061,GO:0065007,GO:0070013,GO:0070603,GO:0071565,GO:0071840,GO:0072359,GO:0080090,GO:0097190,GO:0097458,GO:0140110,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Preferred nameDPF2
DescriptionZinc ion binding
COG categoryK
Max annot lvl33208|Metazoa
EggNOG OGsKOG1244@1|root,KOG1244@2759|Eukaryota,38RNG@33154|Opisthokonta,3BAKC@33208|Metazoa,3CSTE@33213|Bilateria,41UA9@6656|Arthropoda
Evalue2.12e-08
Seed ortholog32264.tetur01g16130.1
Hectar predicted targeting categoryother localisation
TranscriptId160873
TrackFilteredModels1
ProteinId160551
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160551gene_5833Tribonema minus UTEX_B_3156 geneContig_13 996582..996932 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5833_1exon_5833_1Tribonema minus UTEX_B_3156 exonContig_13 996582..996932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5833CDS_5833Tribonema minus UTEX_B_3156 CDSContig_13 996582..996932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160551Trimin1|160551|e_gw1.13.108.1Tribonema minus UTEX_B_3156 polypeptideContig_13 996582..996932 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5833 ID=mRNA_5833|Name=jgi.p|Trimin1|160551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_13:996582..996932+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCAGTGCTCAAACTCCAGCCTCAACCGTTCACTCTGCAACCCTT
TTCGCAACTGCAGGAGAAGCTCACGGTCTGCGACAGCTGCTCTGCGGGGT
GGCACTACGACTGCCTGACGCCGCCGCTGCGCGCCCCGCCTGAGGGCTCG
TGGCGCTGCCGCGCATGCCGCATCAGCACACAGATGGCCAAGGGCAAGCG
CGGGCGCCGCCCCAATAAGGTAGGCTGGCACGCAAGGCCCTGCTGCTATA
AGCCCCATCGTGTGTGCATGCAAGTGGCCAAGGGCAAGCGCGGGCGCCGC
CCCTCCAAGGTAGGCTGGTGTGCAAGGCACTGCTATTTAGTTTCAAATTG
A
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protein sequence of jgi.p|Trimin1|160551

>Trimin1|160551|e_gw1.13.108.1 ID=Trimin1|160551|e_gw1.13.108.1|Name=jgi.p|Trimin1|160551|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGS
WRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCMQVAKGKRGRR
PSKVGWCARHCYLVSN*
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mRNA from alignment at Contig_13:996582..996932+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5833 ID=mRNA_5833|Name=jgi.p|Trimin1|160551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_13:996582..996932+ (Tribonema minus UTEX_B_3156 )
ATGAAAGCAGTGCTCAAACTCCAGCCTCAACCGTTCACTCTGCAACCCTT
TTCGCAACTGCAGGAGAAGCTCACGGTCTGCGACAGCTGCTCTGCGGGGT
GGCACTACGACTGCCTGACGCCGCCGCTGCGCGCCCCGCCTGAGGGCTCG
TGGCGCTGCCGCGCATGCCGCATCAGCACACAGATGGCCAAGGGCAAGCG
CGGGCGCCGCCCCAATAAGGTAGGCTGGCACGCAAGGCCCTGCTGCTATA
AGCCCCATCGTGTGTGCATGCAAGTGGCCAAGGGCAAGCGCGGGCGCCGC
CCCTCCAAGGTAGGCTGGTGTGCAAGGCACTGCTATTTAGTTTCAAATTG
A
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Coding sequence (CDS) from alignment at Contig_13:996582..996932+

>mRNA_5833 ID=mRNA_5833|Name=jgi.p|Trimin1|160551|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_13:996582..996932+ (Tribonema minus UTEX_B_3156 )
ATGAAAGCAGTGCTCAAACTCCAGCCTCAACCGTTCACTCTGCAACCCTT
TTCGCAACTGCAGGAGAAGCTCACGGTCTGCGACAGCTGCTCTGCGGGGT
GGCACTACGACTGCCTGACGCCGCCGCTGCGCGCCCCGCCTGAGGGCTCG
TGGCGCTGCCGCGCATGCCGCATCAGCACACAGATGGCCAAGGGCAAGCG
CGGGCGCCGCCCCAATAAGGTAGGCTGGCACGCAAGGCCCTGCTGCTATA
AGCCCCATCGTGTGTGCATGCAAGTGGCCAAGGGCAAGCGCGGGCGCCGC
CCCTCCAAGGTAGGCTGGTGTGCAAGGCACTGCTATTTAGTTTCAAATTG
A
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