Trimin1|160551|e_gw1.13.108.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|160551
Unique NameTrimin1|160551|e_gw1.13.108.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length117
Homology
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A835ZC80_9STRA (PHD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC80_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.910e-65
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCXXXXXXXXXXXXXXXXXXXXXXYLVSN 116
            MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCXXXXXXXXXXXXXXXXXXXXXXYLVSN
Sbjct:    1 MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCXXXXXXXXXXXXXXXXXXXXXXYLVSN 116          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A1J1I765_9DIPT (CLUMA_CG008284, isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1I765_9DIPT)

HSP 1 Score: 59.7 bits (143), Expect = 5.630e-8
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0
Query:   18 SQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            S+  E+L  CDSC AG+H  CL+PPL  PPEGSW C++C
Sbjct:  971 SENDERLLFCDSCDAGFHMYCLSPPLENPPEGSWDCKSC 1009          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A7S0MDS4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MDS4_9CRYP)

HSP 1 Score: 58.9 bits (141), Expect = 9.890e-8
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 0
Query:   21 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            +E++ +CD C AGWH DCL+PPL A P+G W C  C
Sbjct:  333 EEEMVLCDDCDAGWHLDCLSPPLSAVPDGDWLCPGC 368          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A0A9Z783_LYGHE (PHD and RING finger domain-containing protein 1 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z783_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0
Query:   21 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  188 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 223          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A0A9Y9M1_LYGHE (PHD and RING finger domain-containing protein 1 n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y9M1_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 2.690e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0
Query:   21 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  232 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 267          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A146L8A2_LYGHE (PHD and RING finger domain-containing protein 1 n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L8A2_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 3.480e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0
Query:   21 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  232 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 267          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A0A9Y419_LYGHE (PHD and RING finger domain-containing protein 1 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y419_LYGHE)

HSP 1 Score: 57.4 bits (137), Expect = 3.680e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0
Query:   21 QEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            + ++ +CD C AG+H DCLTPPLRA P+GSW C  C
Sbjct:  232 EHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRC 267          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: UPI00158E97B0 (zinc finger protein ubi-d4 A isoform X3 n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158E97B0)

HSP 1 Score: 55.8 bits (133), Expect = 1.140e-6
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 0
Query:   23 KLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            +L  CD C  G+H  CL+PPL APPEGSW CR C
Sbjct:  367 QLLFCDDCDRGYHMYCLSPPLAAPPEGSWSCRLC 400          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A6P4Z5C2_BRABE (LOW QUALITY PROTEIN: zinc finger protein ubi-d4-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z5C2_BRABE)

HSP 1 Score: 55.8 bits (133), Expect = 1.140e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0
Query:   18 SQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            S+  ++L  CD C  G+H  CL+PPL APPEGSW C+ C
Sbjct:  354 SENDDQLLFCDDCDRGYHMYCLSPPLSAPPEGSWICKLC 392          
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Match: A0A7S0MA14_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MA14_9CRYP)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-6
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 0
Query:   22 EKLTVCDSCSAGWHYDCLTPPLRAPPEGSWRCRAC 56
            E++ VCD C  G+H  CLTPPL+A P+G WRC  C
Sbjct:   21 EQMLVCDECDRGFHTYCLTPPLKAVPDGGWRCSEC 55          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160551 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZC80_9STRA3.910e-65100.00PHD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1J1I765_9DIPT5.630e-858.97CLUMA_CG008284, isoform A n=1 Tax=Clunio marinus T... [more]
A0A7S0MDS4_9CRYP9.890e-855.56Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0A9Z783_LYGHE2.100e-758.33PHD and RING finger domain-containing protein 1 (F... [more]
A0A0A9Y9M1_LYGHE2.690e-758.33PHD and RING finger domain-containing protein 1 n=... [more]
A0A146L8A2_LYGHE3.480e-758.33PHD and RING finger domain-containing protein 1 n=... [more]
A0A0A9Y419_LYGHE3.680e-758.33PHD and RING finger domain-containing protein 1 n=... [more]
UPI00158E97B01.140e-661.76zinc finger protein ubi-d4 A isoform X3 n=1 Tax=Ch... [more]
A0A6P4Z5C2_BRABE1.140e-653.85LOW QUALITY PROTEIN: zinc finger protein ubi-d4-li... [more]
A0A7S0MA14_9CRYP1.520e-657.14Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 19..57
e-value: 0.0026
score: 27.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 15..70
e-value: 1.1E-12
score: 50.0
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 21..57
e-value: 1.6E-8
score: 34.3
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 23..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:996582..996932 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160551mRNA_5833Tribonema minus UTEX_B_3156 mRNAContig_13 996582..996932 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|160551|e_gw1.13.108.1 ID=Trimin1|160551|e_gw1.13.108.1|Name=jgi.p|Trimin1|160551|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MKAVLKLQPQPFTLQPFSQLQEKLTVCDSCSAGWHYDCLTPPLRAPPEGS
WRCRACRISTQMAKGKRGRRPNKVGWHARPCCYKPHRVCMQVAKGKRGRR
PSKVGWCARHCYLVSN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD