mRNA_5753 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134646
Unique NamemRNA_5753
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134646 vs. uniprot
Match: A0A835ZDF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF7_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.700e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIVALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAAFLVEDVRREIVYPHELRGI 357
            VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIVALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAAFLVEDVRREIVYPHELRGI
Sbjct:    1 VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIVALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAAFLVEDVRREIVYPHELRGI 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134646 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDF7_9STRA1.700e-76100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:78578..79059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134646|gw1.13.50.1
GOsGO:0000959,GO:0000963,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016553,GO:0016554,GO:0016556,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0080156,GO:0090304,GO:0090305,GO:0097159,GO:0140053,GO:1900864,GO:1901360,GO:1901363
DescriptionPPR repeat family
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37I0B@33090|Viridiplantae,3G742@35493|Streptophyta,3KQCH@4447|Liliopsida,3I4F2@38820|Poales
Evalue7.46e-07
Seed ortholog4538.ORGLA06G0051000.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-09_000630.1
TranscriptId134968
TrackFilteredModels1
ProteinId134646
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134646gene_5753Tribonema minus UTEX_B_3156 geneContig_13 78578..79059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134646Trimin1|134646|gw1.13.50.1Tribonema minus UTEX_B_3156 polypeptideContig_13 78578..79059 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5753_2exon_5753_2Tribonema minus UTEX_B_3156 exonContig_13 78578..78835 -
exon_5753_1exon_5753_1Tribonema minus UTEX_B_3156 exonContig_13 78961..79059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5753CDS_5753Tribonema minus UTEX_B_3156 CDSContig_13 78961..79059 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5753 ID=mRNA_5753|Name=jgi.p|Trimin1|134646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_13:78578..79059- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCCAGGCCATCCACAACAAACGGCTGCGCTGGTACAACAGCGCCATCGA
CCGACATGGCCGCGAAGGCCGAGTTGCTGAGGCCCTGGAGCTCTTGCAGG
ATATGATAACCGCCGACGTGGAGCCATCGGATGTTACACTGCTGATCGTG
GCCCTGGCCTGCATCAACGCAGGCCGCAACGAGTCCGCCGTTTCAGTGCT
TGAGATCATGACGGAACGGGGAGTGAAGCACCCCGGCCTCGAGATTTACT
CCAGCGCTCTGATCGAAGCCCTGCGAGCCGGAGATCGTGCGAGCGCCGCC
TTCTTGGTGGAGGATGTCCGCAGGGAGATTGTGTACCCTCACGAGCTCAG
GGGCATA
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protein sequence of jgi.p|Trimin1|134646

>Trimin1|134646|gw1.13.50.1 ID=Trimin1|134646|gw1.13.50.1|Name=jgi.p|Trimin1|134646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIV
ALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAA
FLVEDVRREIVYPHELRGI
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mRNA from alignment at Contig_13:78578..79059-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5753 ID=mRNA_5753|Name=jgi.p|Trimin1|134646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=482bp|location=Sequence derived from alignment at Contig_13:78578..79059- (Tribonema minus UTEX_B_3156 )
GTCCAGGCCATCCACAACAAACGGCTGCGCTGGTACAACAGCGCCATCGA
CCGACATGGCCGCGAAGGCCGAGTTGCTGAGGCCCTGGAGCTCTTGCAGG
TGGGCCACCTTGCTCTATAGCTGCATAGTGCCTGTTCTATTCATGGCCAC
CAGCTACTACCACCACATATGCCAGCACGCACTTGCTGATACGATTTGTC
TGTGCCGCTGTGCGCTCTTTACAGGATATGATAACCGCCGACGTGGAGCC
ATCGGATGTTACACTGCTGATCGTGGCCCTGGCCTGCATCAACGCAGGCC
GCAACGAGTCCGCCGTTTCAGTGCTTGAGATCATGACGGAACGGGGAGTG
AAGCACCCCGGCCTCGAGATTTACTCCAGCGCTCTGATCGAAGCCCTGCG
AGCCGGAGATCGTGCGAGCGCCGCCTTCTTGGTGGAGGATGTCCGCAGGG
AGATTGTGTACCCTCACGAGCTCAGGGGCATA
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Coding sequence (CDS) from alignment at Contig_13:78578..79059-

>mRNA_5753 ID=mRNA_5753|Name=jgi.p|Trimin1|134646|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_13:78578..79059- (Tribonema minus UTEX_B_3156 )
GTCCAGGCCATCCACAACAAACGGCTGCGCTGGTACAACAGCGCCATCGA
CCGACATGGCCGCGAAGGCCGAGTTGCTGAGGCCCTGGAGCTCTTGCAGG
ATATGATAACCGCCGACGTGGAGCCATCGGATGTTACACTGCTGATCGTG
GCCCTGGCCTGCATCAACGCAGGCCGCAACGAGTCCGCCGTTTCAGTGCT
TGAGATCATGACGGAACGGGGAGTGAAGCACCCCGGCCTCGAGATTTACT
CCAGCGCTCTGATCGAAGCCCTGCGAGCCGGAGATCGTGCGAGCGCCGCC
TTCTTGGTGGAGGATGTCCGCAGGGAGATTGTGTACCCTCACGAGCTCAG
GGGCATA
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