Trimin1|134646|gw1.13.50.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|134646
Unique NameTrimin1|134646|gw1.13.50.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length119
Homology
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BLAST of jgi.p|Trimin1|134646 vs. uniprot
Match: A0A835ZDF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF7_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.700e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 
Query:    1 VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIVALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAAFLVEDVRREIVYPHELRGI 119
            VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIVALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAAFLVEDVRREIVYPHELRGI
Sbjct:    1 VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIVALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAAFLVEDVRREIVYPHELRGI 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134646 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDF7_9STRA1.700e-76100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 8..116
e-value: 7.5E-14
score: 53.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 53..75
e-value: 0.57
score: 10.6
coord: 12..38
e-value: 2.1E-4
score: 21.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 12..43
e-value: 6.8E-7
score: 27.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 8..42
score: 9.514466

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:78578..79059 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134646mRNA_5753Tribonema minus UTEX_B_3156 mRNAContig_13 78578..79059 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|134646|gw1.13.50.1 ID=Trimin1|134646|gw1.13.50.1|Name=jgi.p|Trimin1|134646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
VQAIHNKRLRWYNSAIDRHGREGRVAEALELLQDMITADVEPSDVTLLIV
ALACINAGRNESAVSVLEIMTERGVKHPGLEIYSSALIEALRAGDRASAA
FLVEDVRREIVYPHELRGI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat