mRNA_5633 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A835YSI7_9STRA (Putative ABC transport system, membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI7_9STRA) HSP 1 Score: 649 bits (1673), Expect = 1.430e-232 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1 Query: 1 MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGLTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAFNGLRGLVKECWSKMRDRSTREYAIVRGDSWRTSPATSSAVV 1026 MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGLTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAFNGLRGLVKECWSKMRDRSTREYAIVRGDSWRTSPATSSAVV Sbjct: 1 MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGLTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAFNGLRGLVKECWSKMRDRSTREYAIVRGDSWRTSPATSSAVV 342
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A7S2AT94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AT94_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.550e-47 Identity = 100/263 (38.02%), Postives = 153/263 (58.17%), Query Frame = 1 Query: 139 ISSWQKLGLERAYVVATARATVQLAVLGY-VLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAF 903 IS +L LE + A RA VQL +LGY +LVP F + W + + M ++AA+EA+ R Y Y LYA + ++ + LVLT + +++ PWW PQY I + GM+ + N+++A+S+ FL+ L ++ CV+ RL+ GATRWEA+ P + GLTP +N+M V+GL TGQILGG P AA+YQM+I F+IC ++ + +++ +FD +HRL + +S+RPG K+D+L A Sbjct: 2 ISRAMRLQLEGRVITAAIRAVVQLLILGYCLLVPIFGAQKPWLVITYLGFMLIVAAQEASNRPAYRYAILYAHAFAAIAGSTTLVLTYSFCFVVIPSPWWEPQYLIPVGGMI---------IGNSISALSLAMDRFLSLLVQQHDCVELRLSLGATRWEAILPFFRRACVVGLTPNINSMSVVGLVSIPGMMTGQILGGQNPSDAAKYQMMILFVICTNGLGTMMIGLSIAVSHVFDDDHRLRL-HLISKRPGPKKDVLVTAL 254
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A1J5DKT5_9DELT (Iron export ABC transporter permease subunit FetB n=1 Tax=Deltaproteobacteria bacterium CG2_30_63_29 TaxID=1805126 RepID=A0A1J5DKT5_9DELT) HSP 1 Score: 172 bits (436), Expect = 4.010e-47 Identity = 103/236 (43.64%), Postives = 141/236 (59.75%), Query Frame = 1 Query: 154 KLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840 KLGL R ++ + R QL +LGYVL+P F R W L+ M IAAREAT R+ +KG++A ++++ + S++ I VEPWWAPQYFI + GM+ L N+L +++G LT L E+R ++ RLA GAT WEA RP+V + G+ P LN M V+GL TGQ+LGG PEQAARYQ++I FLI AA+++G + AV + LFD HRL Sbjct: 13 KLGLGRKLLLTSLRTFGQLTLLGYVLLPIFETRRPWLVGLLALVMTAIAAREATGRSSRRFKGVWAGNFVAIFVSSLVTAVLGSAVFIGVEPWWAPQYFIPLLGMI---------LGNSLTGVTLGLDSTLTQLDEQRTHIEWRLAMGATWWEAARPVVRRATSAGMIPILNTMSVVGLVSIPGMMTGQLLGGTSPEQAARYQILILFLIAAATALGCVMAVLWATRRLFDDAHRL 239
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A2E7M5H0_9DELT (Iron export ABC transporter permease subunit FetB n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M5H0_9DELT) HSP 1 Score: 166 bits (420), Expect = 1.470e-44 Identity = 102/242 (42.15%), Postives = 139/242 (57.44%), Query Frame = 1 Query: 136 LISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840 L+S W LGLER VA+ R VQL +LG++L+P F I M ++A R A R+ Y+G Y +++++L + I+ VEPWW P+Y I + GM+ L N L IS+G LT L E R VD LA GA+RWEA RP+ +MR+G+ P LN M V+GL TGQILGG P +AARYQ++I FLI +A+++G +V LS+ ALFD +HRL Sbjct: 25 LLSLWLGLGLERKLFVASVRTVVQLLLLGWILMPVFTWNNQAVVFGICLAMVILATRAAVKRSSRSYRGAYRSSFVALLLGAGATALIGTWGIVGVEPWWQPRYLIPLLGMI---------LGNGLTGISLGLDRCLTQLDEGRARVDVYLALGASRWEAARPVAADAMRSGMIPILNAMTVVGLVTIPGMMTGQILGGTDPAEAARYQILIMFLIASATAMGTALSVLLSLRALFDDDHRL 257
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: I0YTT5_COCSC (Putative membrane protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YTT5_COCSC) HSP 1 Score: 166 bits (420), Expect = 3.140e-44 Identity = 99/259 (38.22%), Postives = 139/259 (53.67%), Query Frame = 1 Query: 85 ISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840 IS V LG A V V +S W KL + +V R VQL VLGY+LVP F + WW LL M + + EA R Y YKG+ + V + + L+ L++++ PWWAPQYFI + GMM L N+++ +SVG + L + ++ LA GATRWEA + + +R LTP +N M V+G+ TGQIL G+ P QAARYQMII F+I A++ +G + ++ + L D RL Sbjct: 17 ISPGQVALGAAIVIVNAFVSVWLKLDMHWQLLVGVIRCVVQLTVLGYILVPIFTYNLWWLVLLYAFFMLFVGSLEAVQRPAYTYKGMLLQTLSCVGTSAGVFLSYTLLFVVRTHPWWAPQYFIPILGMM---------LGNSISGVSVGLSALLEDFSVGKDRIEQLLALGATRWEATQASIQRCVRMALTPIMNQMNVVGIVSIPGMMTGQILSGSDPSQAARYQMIIMFIIAASTGVGAVASLMFTSFYLVDMSSRL 266
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A2D6HFW1_9BACT (Iron export ABC transporter permease subunit FetB n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HFW1_9BACT) HSP 1 Score: 165 bits (417), Expect = 4.020e-44 Identity = 114/275 (41.45%), Postives = 149/275 (54.18%), Query Frame = 1 Query: 85 ISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNC----MGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGG 876 + W + + + V V L+S W LGL R ++A+ R VQL +LGYVLV F W S L V M L+AARE+ RA Y G+ LS+ L A I+ VEPWW P+Y I GM+ L N L IS+G L L E R V+ LA+GATRWEA R + ++R G+ P LN+M V+GL TGQ+LGG P AARYQ++I FLI +A++ G+ V LS+ ALFD EHRL + R+ R GG Sbjct: 7 LGWGQLAIAASLVCVNGLVSLWLHLGLGRRLLIASLRTCVQLILLGYVLVAVFE----WRSALGVGAIAAGMVLLAARESVRRAGRSYAGIGRDSLLSLALVGGATTVMATAVIVGVEPWWEPRYLIPFLGMV---------LGNGLTGISLGLERCLRELDEGRVRVEFLLAQGATRWEASRDVAADAVRGGMVPILNSMTVVGLVTIPGMMTGQLLGGISPLTAARYQILIMFLIASATAAGVTAVVLLSLRALFDEEHRLRI-ERVRRVRGG 267
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A1F9KK74_9DELT (Iron export ABC transporter permease subunit FetB n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9KK74_9DELT) HSP 1 Score: 164 bits (415), Expect = 6.120e-44 Identity = 103/244 (42.21%), Postives = 143/244 (58.61%), Query Frame = 1 Query: 139 ISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLI-VNCMGLI--AAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840 +S W +L LER ++A+ R VQL +LGY+LVP F W LI C+ +I AAREA R Y G+ + ++ L + + A+ ++ VEPWW P+Y I + GM+ L N+L IS+G L L E R V+A LA GAT WEA RP+ ++RTG+ P LN M V+G+ TGQ+LGG PP+ AARYQ++I FLI A+++ G A+ L++ LFDSEHRL Sbjct: 19 LSLWLRLRLERRLLIASLRTVVQLLLLGYLLVPIFA---WRNPFLIGATCLLMISLAAREAVRRVGRSYGGIGRNAFFALSLSATVTTLLAVTVLVGVEPWWEPRYLIPLLGMI---------LGNSLTGISLGLDRCLAELDEGRDRVEAMLAFGATWWEAARPVAAEALRTGMIPILNTMSVVGIVTIPGMMTGQLLGGTPPDMAARYQILIIFLIAASTAAGGTLAILLTLRRLFDSEHRL 250
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: E6SI40_THEM7 (Uncharacterized protein n=3 Tax=Thermaerobacter TaxID=73918 RepID=E6SI40_THEM7) HSP 1 Score: 162 bits (411), Expect = 3.090e-43 Identity = 106/263 (40.30%), Postives = 148/263 (56.27%), Query Frame = 1 Query: 79 VLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFN--HPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840 V + + V L + + ++S LGLER +VA+ R VQL ++GY+L F HP W LL+ M +A A R ++G+YA LSV++ S LV A+ I+ PW+ PQY I + GM+ L NALN +S+G FL L +R V+ LA GATRWEA R ++ ++RTG+ PTLN+M V+GL TGQIL G P A RYQ++I F+I AA+++G LGAV + +L D HRL Sbjct: 6 VQLGYGEVALAAGLILINGVLSLALGLGLERRLLVASVRTVVQLLLIGYLLKFIFGLRHPLW--VLLLGLVMVALAGHAAVGRVSGRFRGIYAGSTLSVLVSSFLVTGLAVGAIVRPRPWYEPQYVIPLLGMV---------LGNALNGVSLGLDRFLEGLARRRDQVEGLLALGATRWEACRDVIRDAVRTGMVPTLNSMAVVGLVSLPGMMTGQILAGADPADAVRYQIVIMFMIAAATALGTLGAVAYAYRSLLDGFHRL 257
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: Q2SWB2_BURTA (Membrane protein, putative n=4 Tax=pseudomallei group TaxID=111527 RepID=Q2SWB2_BURTA) HSP 1 Score: 162 bits (410), Expect = 4.830e-43 Identity = 111/267 (41.57%), Postives = 142/267 (53.18%), Query Frame = 1 Query: 94 SHVCLGIATVGVAV--LISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLG-------LTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRR 867 S V +GIA VA+ IS LGL R A AR VQL +GYVL F HPRW+ L +V M LIA AR K Y G A LS+ S V L +I + PW+ PQY I + GM+ L N L +S+G + L +R V+ LA GATRWEA + ++R G+ PTLN M V+G +TGQ+L G P QA RYQ++I FLI AAS++G +GAV + LF +EHR + SRL R Sbjct: 9 SLVDIGIAAALVAINGAISVALSLGLGRKLAWAAARTVVQLLSIGYVLGWVFGHPRWYVVLPLVALMTLIAGFAGAARGKRTYAGQRADSILSIWASSWFVAAIGLFVVIRIHPWYEPQYAIPILGMI---------LGNTLTGVSLGIERMMEELTARRDRVETALALGATRWEAAQDAARQAVRAGMLPTLNQMAVVGVVSLPGMMTGQVLAGQSPLQAVRYQIVIMFLIAAASALGTVGAVLSTYRRLFSAEHRF-LASRLVER 265
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A2VQ43_9BURK (Uncharacterized protein n=369 Tax=Burkholderiaceae TaxID=119060 RepID=A2VQ43_9BURK) HSP 1 Score: 162 bits (410), Expect = 1.420e-42 Identity = 112/284 (39.44%), Postives = 147/284 (51.76%), Query Frame = 1 Query: 55 DGTVGGSTVLISWSHVCLGIATVGVAV--LISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGL----YARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLG-------LTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRR 867 DG S L S V +GIA VAV IS+ LGL R +A R VQL +GYVL F HP W+ L + M LIA R K Y+G A +W S S V L +I + PW+APQY I + GM+ L N L +S+G + L +R V+ LA GATRWEA + ++R G+ PTLN M V+G +TGQ+L G P QA RYQ++I FLI AAS++G +GAV ++ LF ++HR + SRL R Sbjct: 42 DGGCAMSPALQDLSLVDVGIAAALVAVNGAISAALSLGLGRKLALAAVRTVVQLLAIGYVLGWVFGHPHWYVVLPLTALMTLIAGFAGAGRGKRTYRGQRVDSIASIWFS----SWFVAAVGLFVVIRIHPWFAPQYAIPILGMI---------LGNTLTGVSLGVERMMEELTARRDRVETALALGATRWEAAQDAARQAVRAGMLPTLNQMAVVGVVSLPGMMTGQVLAGQSPLQAVRYQIVIMFLIAAASALGTVGAVLMTYRRLFSADHRF-LASRLEER 311 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5633 ID=mRNA_5633|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1394bp|location=Sequence derived from alignment at Contig_42:263100..267636+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACTCAGCACAGTTGCAGATGGCGGCGGCCGACGCTGAAAATGCCGCback to top protein sequence of jgi.p|Trimin1|349368 >Trimin1|349368|estExt_Genemark1.C_Ctg_420035 ID=Trimin1|349368|estExt_Genemark1.C_Ctg_420035|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSWback to top mRNA from alignment at Contig_42:263100..267636+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5633 ID=mRNA_5633|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4537bp|location=Sequence derived from alignment at Contig_42:263100..267636+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_42:263100..267636+ >mRNA_5633 ID=mRNA_5633|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_42:263100..267636+ (Tribonema minus UTEX_B_3156 )back to top |