mRNA_5633 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349368
Unique NamemRNA_5633
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A835YSI7_9STRA (Putative ABC transport system, membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI7_9STRA)

HSP 1 Score: 649 bits (1673), Expect = 1.430e-232
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1
Query:    1 MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGLTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAFNGLRGLVKECWSKMRDRSTREYAIVRGDSWRTSPATSSAVV 1026
            MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGLTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAFNGLRGLVKECWSKMRDRSTREYAIVRGDSWRTSPATSSAVV
Sbjct:    1 MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGLTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAFNGLRGLVKECWSKMRDRSTREYAIVRGDSWRTSPATSSAVV 342          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A7S2AT94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AT94_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.550e-47
Identity = 100/263 (38.02%), Postives = 153/263 (58.17%), Query Frame = 1
Query:  139 ISSWQKLGLERAYVVATARATVQLAVLGY-VLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAAF 903
            IS   +L LE   + A  RA VQL +LGY +LVP F   + W  +  +  M ++AA+EA+ R  Y Y  LYA  + ++   + LVLT +  +++   PWW PQY I + GM+         + N+++A+S+    FL+ L ++  CV+ RL+ GATRWEA+ P    +   GLTP +N+M V+GL       TGQILGG  P  AA+YQM+I F+IC      ++  + +++  +FD +HRL +   +S+RPG K+D+L  A 
Sbjct:    2 ISRAMRLQLEGRVITAAIRAVVQLLILGYCLLVPIFGAQKPWLVITYLGFMLIVAAQEASNRPAYRYAILYAHAFAAIAGSTTLVLTYSFCFVVIPSPWWEPQYLIPVGGMI---------IGNSISALSLAMDRFLSLLVQQHDCVELRLSLGATRWEAILPFFRRACVVGLTPNINSMSVVGLVSIPGMMTGQILGGQNPSDAAKYQMMILFVICTNGLGTMMIGLSIAVSHVFDDDHRLRL-HLISKRPGPKKDVLVTAL 254          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A1J5DKT5_9DELT (Iron export ABC transporter permease subunit FetB n=1 Tax=Deltaproteobacteria bacterium CG2_30_63_29 TaxID=1805126 RepID=A0A1J5DKT5_9DELT)

HSP 1 Score: 172 bits (436), Expect = 4.010e-47
Identity = 103/236 (43.64%), Postives = 141/236 (59.75%), Query Frame = 1
Query:  154 KLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840
            KLGL R  ++ + R   QL +LGYVL+P F   R W   L+   M  IAAREAT R+   +KG++A  ++++ + S++         I VEPWWAPQYFI + GM+         L N+L  +++G    LT L E+R  ++ RLA GAT WEA RP+V  +   G+ P LN M V+GL       TGQ+LGG  PEQAARYQ++I FLI AA+++G + AV  +   LFD  HRL
Sbjct:   13 KLGLGRKLLLTSLRTFGQLTLLGYVLLPIFETRRPWLVGLLALVMTAIAAREATGRSSRRFKGVWAGNFVAIFVSSLVTAVLGSAVFIGVEPWWAPQYFIPLLGMI---------LGNSLTGVTLGLDSTLTQLDEQRTHIEWRLAMGATWWEAARPVVRRATSAGMIPILNTMSVVGLVSIPGMMTGQLLGGTSPEQAARYQILILFLIAAATALGCVMAVLWATRRLFDDAHRL 239          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A2E7M5H0_9DELT (Iron export ABC transporter permease subunit FetB n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M5H0_9DELT)

HSP 1 Score: 166 bits (420), Expect = 1.470e-44
Identity = 102/242 (42.15%), Postives = 139/242 (57.44%), Query Frame = 1
Query:  136 LISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840
            L+S W  LGLER   VA+ R  VQL +LG++L+P F          I   M ++A R A  R+   Y+G Y   +++++L +          I+ VEPWW P+Y I + GM+         L N L  IS+G    LT L E R  VD  LA GA+RWEA RP+   +MR+G+ P LN M V+GL       TGQILGG  P +AARYQ++I FLI +A+++G   +V LS+ ALFD +HRL
Sbjct:   25 LLSLWLGLGLERKLFVASVRTVVQLLLLGWILMPVFTWNNQAVVFGICLAMVILATRAAVKRSSRSYRGAYRSSFVALLLGAGATALIGTWGIVGVEPWWQPRYLIPLLGMI---------LGNGLTGISLGLDRCLTQLDEGRARVDVYLALGASRWEAARPVAADAMRSGMIPILNAMTVVGLVTIPGMMTGQILGGTDPAEAARYQILIMFLIASATAMGTALSVLLSLRALFDDDHRL 257          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: I0YTT5_COCSC (Putative membrane protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YTT5_COCSC)

HSP 1 Score: 166 bits (420), Expect = 3.140e-44
Identity = 99/259 (38.22%), Postives = 139/259 (53.67%), Query Frame = 1
Query:   85 ISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840
            IS   V LG A V V   +S W KL +    +V   R  VQL VLGY+LVP F +  WW  LL    M  + + EA  R  Y YKG+  +    V   + + L+  L++++   PWWAPQYFI + GMM         L N+++ +SVG +  L      +  ++  LA GATRWEA +  +   +R  LTP +N M V+G+       TGQIL G+ P QAARYQMII F+I A++ +G + ++  +   L D   RL
Sbjct:   17 ISPGQVALGAAIVIVNAFVSVWLKLDMHWQLLVGVIRCVVQLTVLGYILVPIFTYNLWWLVLLYAFFMLFVGSLEAVQRPAYTYKGMLLQTLSCVGTSAGVFLSYTLLFVVRTHPWWAPQYFIPILGMM---------LGNSISGVSVGLSALLEDFSVGKDRIEQLLALGATRWEATQASIQRCVRMALTPIMNQMNVVGIVSIPGMMTGQILSGSDPSQAARYQMIIMFIIAASTGVGAVASLMFTSFYLVDMSSRL 266          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A2D6HFW1_9BACT (Iron export ABC transporter permease subunit FetB n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HFW1_9BACT)

HSP 1 Score: 165 bits (417), Expect = 4.020e-44
Identity = 114/275 (41.45%), Postives = 149/275 (54.18%), Query Frame = 1
Query:   85 ISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNC----MGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGG 876
            + W  + +  + V V  L+S W  LGL R  ++A+ R  VQL +LGYVLV  F     W S L V      M L+AARE+  RA   Y G+     LS+ L        A   I+ VEPWW P+Y I   GM+         L N L  IS+G    L  L E R  V+  LA+GATRWEA R +   ++R G+ P LN+M V+GL       TGQ+LGG  P  AARYQ++I FLI +A++ G+   V LS+ ALFD EHRL +  R+ R  GG
Sbjct:    7 LGWGQLAIAASLVCVNGLVSLWLHLGLGRRLLIASLRTCVQLILLGYVLVAVFE----WRSALGVGAIAAGMVLLAARESVRRAGRSYAGIGRDSLLSLALVGGATTVMATAVIVGVEPWWEPRYLIPFLGMV---------LGNGLTGISLGLERCLRELDEGRVRVEFLLAQGATRWEASRDVAADAVRGGMVPILNSMTVVGLVTIPGMMTGQLLGGISPLTAARYQILIMFLIASATAAGVTAVVLLSLRALFDEEHRLRI-ERVRRVRGG 267          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A0A1F9KK74_9DELT (Iron export ABC transporter permease subunit FetB n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9KK74_9DELT)

HSP 1 Score: 164 bits (415), Expect = 6.120e-44
Identity = 103/244 (42.21%), Postives = 143/244 (58.61%), Query Frame = 1
Query:  139 ISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLI-VNCMGLI--AAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840
            +S W +L LER  ++A+ R  VQL +LGY+LVP F    W    LI   C+ +I  AAREA  R    Y G+    + ++ L + +    A+  ++ VEPWW P+Y I + GM+         L N+L  IS+G    L  L E R  V+A LA GAT WEA RP+   ++RTG+ P LN M V+G+       TGQ+LGG PP+ AARYQ++I FLI A+++ G   A+ L++  LFDSEHRL
Sbjct:   19 LSLWLRLRLERRLLIASLRTVVQLLLLGYLLVPIFA---WRNPFLIGATCLLMISLAAREAVRRVGRSYGGIGRNAFFALSLSATVTTLLAVTVLVGVEPWWEPRYLIPLLGMI---------LGNSLTGISLGLDRCLAELDEGRDRVEAMLAFGATWWEAARPVAAEALRTGMIPILNTMSVVGIVTIPGMMTGQLLGGTPPDMAARYQILIIFLIAASTAAGGTLAILLTLRRLFDSEHRL 250          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: E6SI40_THEM7 (Uncharacterized protein n=3 Tax=Thermaerobacter TaxID=73918 RepID=E6SI40_THEM7)

HSP 1 Score: 162 bits (411), Expect = 3.090e-43
Identity = 106/263 (40.30%), Postives = 148/263 (56.27%), Query Frame = 1
Query:   79 VLISWSHVCLGIATVGVAVLISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFN--HPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLGL-------TGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRL 840
            V + +  V L    + +  ++S    LGLER  +VA+ R  VQL ++GY+L   F   HP W   LL+   M  +A   A  R    ++G+YA   LSV++ S LV   A+  I+   PW+ PQY I + GM+         L NALN +S+G   FL  L  +R  V+  LA GATRWEA R ++  ++RTG+ PTLN+M V+GL       TGQIL G  P  A RYQ++I F+I AA+++G LGAV  +  +L D  HRL
Sbjct:    6 VQLGYGEVALAAGLILINGVLSLALGLGLERRLLVASVRTVVQLLLIGYLLKFIFGLRHPLW--VLLLGLVMVALAGHAAVGRVSGRFRGIYAGSTLSVLVSSFLVTGLAVGAIVRPRPWYEPQYVIPLLGMV---------LGNALNGVSLGLDRFLEGLARRRDQVEGLLALGATRWEACRDVIRDAVRTGMVPTLNSMAVVGLVSLPGMMTGQILAGADPADAVRYQIVIMFMIAAATALGTLGAVAYAYRSLLDGFHRL 257          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: Q2SWB2_BURTA (Membrane protein, putative n=4 Tax=pseudomallei group TaxID=111527 RepID=Q2SWB2_BURTA)

HSP 1 Score: 162 bits (410), Expect = 4.830e-43
Identity = 111/267 (41.57%), Postives = 142/267 (53.18%), Query Frame = 1
Query:   94 SHVCLGIATVGVAV--LISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLG-------LTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRR 867
            S V +GIA   VA+   IS    LGL R    A AR  VQL  +GYVL   F HPRW+  L +V  M LIA     AR K  Y G  A   LS+   S  V    L  +I + PW+ PQY I + GM+         L N L  +S+G    +  L  +R  V+  LA GATRWEA +     ++R G+ PTLN M V+G       +TGQ+L G  P QA RYQ++I FLI AAS++G +GAV  +   LF +EHR  + SRL  R
Sbjct:    9 SLVDIGIAAALVAINGAISVALSLGLGRKLAWAAARTVVQLLSIGYVLGWVFGHPRWYVVLPLVALMTLIAGFAGAARGKRTYAGQRADSILSIWASSWFVAAIGLFVVIRIHPWYEPQYAIPILGMI---------LGNTLTGVSLGIERMMEELTARRDRVETALALGATRWEAAQDAARQAVRAGMLPTLNQMAVVGVVSLPGMMTGQVLAGQSPLQAVRYQIVIMFLIAAASALGTVGAVLSTYRRLFSAEHRF-LASRLVER 265          
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Match: A2VQ43_9BURK (Uncharacterized protein n=369 Tax=Burkholderiaceae TaxID=119060 RepID=A2VQ43_9BURK)

HSP 1 Score: 162 bits (410), Expect = 1.420e-42
Identity = 112/284 (39.44%), Postives = 147/284 (51.76%), Query Frame = 1
Query:   55 DGTVGGSTVLISWSHVCLGIATVGVAV--LISSWQKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIAAREATARAKYVYKGL----YARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYFITMAGMMXXXXXXXXXLNNALNAISVGHTGFLTALYEKRQCVDARLAKGATRWEAVRPLVISSMRTGLTPTLNNMRVLG-------LTGQILGGNPPEQAARYQMIIFFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRR 867
            DG    S  L   S V +GIA   VAV   IS+   LGL R   +A  R  VQL  +GYVL   F HP W+  L +   M LIA      R K  Y+G      A +W S    S  V    L  +I + PW+APQY I + GM+         L N L  +S+G    +  L  +R  V+  LA GATRWEA +     ++R G+ PTLN M V+G       +TGQ+L G  P QA RYQ++I FLI AAS++G +GAV ++   LF ++HR  + SRL  R
Sbjct:   42 DGGCAMSPALQDLSLVDVGIAAALVAVNGAISAALSLGLGRKLALAAVRTVVQLLAIGYVLGWVFGHPHWYVVLPLTALMTLIAGFAGAGRGKRTYRGQRVDSIASIWFS----SWFVAAVGLFVVIRIHPWFAPQYAIPILGMI---------LGNTLTGVSLGVERMMEELTARRDRVETALALGATRWEAAQDAARQAVRAGMLPTLNQMAVVGVVSLPGMMTGQVLAGQSPLQAVRYQIVIMFLIAAASALGTVGAVLMTYRRLFSADHRF-LASRLEER 311          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSI7_9STRA1.430e-232100.00Putative ABC transport system, membrane protein n=... [more]
A0A7S2AT94_9STRA1.550e-4738.02Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1J5DKT5_9DELT4.010e-4743.64Iron export ABC transporter permease subunit FetB ... [more]
A0A2E7M5H0_9DELT1.470e-4442.15Iron export ABC transporter permease subunit FetB ... [more]
I0YTT5_COCSC3.140e-4438.22Putative membrane protein n=2 Tax=Coccomyxa TaxID=... [more]
A0A2D6HFW1_9BACT4.020e-4441.45Iron export ABC transporter permease subunit FetB ... [more]
A0A1F9KK74_9DELT6.120e-4442.21Iron export ABC transporter permease subunit FetB ... [more]
E6SI40_THEM73.090e-4340.30Uncharacterized protein n=3 Tax=Thermaerobacter Ta... [more]
Q2SWB2_BURTA4.830e-4341.57Membrane protein, putative n=4 Tax=pseudomallei gr... [more]
A2VQ43_9BURK1.420e-4239.44Uncharacterized protein n=369 Tax=Burkholderiaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:263100..267636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349368|estExt_Genemark1.C_Ctg_420035
DescriptionUncharacterised protein family (UPF0014)
COG categoryS
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0390@1|root,2QR7N@2759|Eukaryota,37PG7@33090|Viridiplantae,34KU6@3041|Chlorophyta
Evalue2.8e-46
Seed ortholog248742.XP_005646348.1
Hectar predicted targeting categoryother localisation
TranscriptId349690
TrackFilteredModels1
ProteinId349368
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349368gene_5633Tribonema minus UTEX_B_3156 geneContig_42 263100..267636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349368Trimin1|349368|estExt_Genemark1.C_Ctg_420035Tribonema minus UTEX_B_3156 polypeptideContig_42 263100..267271 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5633_1exon_5633_1Tribonema minus UTEX_B_3156 exonContig_42 263100..263397 +
exon_5633_2exon_5633_2Tribonema minus UTEX_B_3156 exonContig_42 263953..264125 +
exon_5633_3exon_5633_3Tribonema minus UTEX_B_3156 exonContig_42 264207..264233 +
exon_5633_4exon_5633_4Tribonema minus UTEX_B_3156 exonContig_42 264704..264817 +
exon_5633_5exon_5633_5Tribonema minus UTEX_B_3156 exonContig_42 265553..265630 +
exon_5633_6exon_5633_6Tribonema minus UTEX_B_3156 exonContig_42 266173..266295 +
exon_5633_7exon_5633_7Tribonema minus UTEX_B_3156 exonContig_42 266708..266883 +
exon_5633_8exon_5633_8Tribonema minus UTEX_B_3156 exonContig_42 267232..267636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5633CDS_5633Tribonema minus UTEX_B_3156 CDSContig_42 263100..263397 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5633UTR3_5633Tribonema minus UTEX_B_3156 three_prime_UTRContig_42 267272..267636 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5633 ID=mRNA_5633|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1394bp|location=Sequence derived from alignment at Contig_42:263100..267636+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCAGCACAGTTGCAGATGGCGGCGGCCGACGCTGAAAATGCCGC
AATGGACGGCACCGTGGGCGGCAGCACCGTCCTGATAAGCTGGTCCCACG
TGTGCCTCGGCATTGCCACGGTCGGCGTCGCAGTGCTCATATCGTCGTGG
CAGAAGCTGGGCCTGGAGCGCGCGTACGTGGTGGCAACGGCGCGCGCGAC
TGTGCAGCTGGCAGTGCTCGGCTACGTTCTGGTGCCGTGCTTCAACCACC
CGCGCTGGTGGGCCTCGCTGCTCATCGTCAACTGCATGGGGCTCATAGCT
GCGCGCGAGGCCACAGCGCGCGCCAAATACGTCTACAAGGGCCTGTACGC
GCGTGTGTGGCTGAGCGTTGTGCTGCCCAGTATACTCGTACTCACGGGCG
CACTCATGTACATCATACCGGTGGAGCCGTGGTGGGCGCCGCAATACTTC
ATCACCATGGCTGGCATGATGTACTTCATCACCATGGCGGGCATGATGTT
GAACAACGCGCTCAACGCCATCAGCGTCGGCCACACCGGGTTTCTCACGG
CGCTTTATGAGAAGCGTCAGTGTGTGGACGCCAGGCTTGCCAAGGGCGCT
ACGCGCTGGGAGGCGGTGCGCCCTCTGGTCATCTCCAGCATGCGCACCGG
TCTCACCCCCACACTCAACAACATGCGAGTGCTGGGGCTGACGGGTCAGA
TACTGGGCGGCAACCCGCCCGAACAGGCGGCGCGGTACCAGATGATCATC
TTCTTTCTCATCTGCGCGGCCTCCAGCATCGGCTTGCTAGGAGCAGTCGA
CCTGAGCATTGAGGCGCTGTTTGATTCGGAGCACAGGCTGTGCGTCACAT
CACGGCTCAGCAGACGCCCCGGCGGCAAAGAAGACATTCTCACGGCAGCG
TTCAACGGCCTTCGGGGCCTCGTGAAAGAGTGCTGGTCGAAAATGAGGGA
CCGCAGTACGCGAGAGTACGCGATTGTGCGCGGAGACAGCTGGCGTACGA
GCCCGGCTACTTCATCGGCAGTAGTCTGAACGTGACCCCGGGCGGCCTGT
CAGGCGGAGCACTGCTGCTGTGCATCCTGAGCCGTGCTGCTGGCGGTGCA
GCTCTCAGCAGAGCATCAAGTCAACACAAACACACACACAGCGAGATCCA
CATCAACAACATCAGCAGCACTCAAAGCAGCCATGAGTTAGGCACGTGAT
TGCCGTGAAAAGAGGCTCTGCTTTCTGCTTTCTAGGTGGGAGGGACGGTA
TGGCACAGAGAGTAGGCATGGTTGCGGGCTTTCTACCAGCAGCGCACAAT
GGCGTACACTGCGCCAAGCCACTGCAGACTTCAAACCAATGGCACCTCTC
AAAGAGGTGCATGAATCACAATTACAAAAAAAGGTGTTTACAAC
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protein sequence of jgi.p|Trimin1|349368

>Trimin1|349368|estExt_Genemark1.C_Ctg_420035 ID=Trimin1|349368|estExt_Genemark1.C_Ctg_420035|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
MDSAQLQMAAADAENAAMDGTVGGSTVLISWSHVCLGIATVGVAVLISSW
QKLGLERAYVVATARATVQLAVLGYVLVPCFNHPRWWASLLIVNCMGLIA
AREATARAKYVYKGLYARVWLSVVLPSILVLTGALMYIIPVEPWWAPQYF
ITMAGMMYFITMAGMMLNNALNAISVGHTGFLTALYEKRQCVDARLAKGA
TRWEAVRPLVISSMRTGLTPTLNNMRVLGLTGQILGGNPPEQAARYQMII
FFLICAASSIGLLGAVDLSIEALFDSEHRLCVTSRLSRRPGGKEDILTAA
FNGLRGLVKECWSKMRDRSTREYAIVRGDSWRTSPATSSAVV*
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mRNA from alignment at Contig_42:263100..267636+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5633 ID=mRNA_5633|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4537bp|location=Sequence derived from alignment at Contig_42:263100..267636+ (Tribonema minus UTEX_B_3156 )
ATGGACTCAGCACAGTTGCAGATGGCGGCGGCCGACGCTGAAAATGCCGC AATGGACGGCACCGTGGGCGGCAGCACCGTCCTGATAAGCTGGTCCCACG TGTGCCTCGGCATTGCCACGGTCGGCGTCGCAGTGCTCATATCGTCGTGG CAGAAGCTGGGCCTGGAGCGCGCGTACGTGGTGGCAACGGCGCGCGCGAC TGTGCAGCTGGCAGTGCTCGGCTACGTTCTGGTGCCGTGCTTCAACCACC CGCGCTGGTGGGCCTCGCTGCTCATCGTCAACTGCATGGGGCTCATAGGT AAGTGCGCTCTGCAGCTTGTGCGCACGTCGAGAGAGGGTTGGTGCTCATC GTTAACGGCATGGGTCTCATTGATGAGCGCTCTGCAGCGTGCACGCGTTG AGCGGGTTGAAGTTAGGGTCACAAAGTTTGGTATGCGTGCGTTGAGGATG GTGTAGCGGGAGCTGCGGTATTCACGACTGCTGGATGCTTGACGTTCACC TGACTTTTGTCTGCATGTGCATCGCAGCGCGCTCAGCTCTGTGCTCATCT ACATTAAACTCCCATGCGCGGCTACACGTCGCTGGCTGCTCACTGGTCCC TTGTGTGCGGCCAGCACGATAGCCTACCCTGCCCCAATTTGCTATGTTTC TCATGTGGTTCCGTGGGGGTTAAGTCTGGAGGAATCGTAAATATGTTTCA GCACACAATGATCATGTCACCGTGCCCTGCGACTACTTGATGAGTGCGCC CTGCCTCACGCGCAGCAACATACCTTGATACCCTTCTGTGACACCACAAT GCAACAAATTTCACTTGCTGTTCGCCGCCACTGCCGCCGTCGCCGCCTTC CAGCTGCGCGCGAGGCCACAGCGCGCGCCAAATACGTCTACAAGGGCCTG TACGCGCGTGTGTGGCTGAGCGTTGTGCTGCCCAGTATACTCGTACTCAC GGGCGCACTCATGTACATCATACCGGTGGAGCCGTGGTGGGCGCCGCAAT ACTTCATCACCATGGCTGGCATGATGGTGCGTCATTGGTGGTATGTATGC ATGTATGTATGTATGGACTTGAAGTTGTAATTTGATGTGCCGTGGTGGGC GTCGCAGTACTTCATCACCATGGCGGGCATGATGGTGAGTGTGATTGGTA GCGTGTATGTATGTATGGATGGATGGATTTGAAGTTGCCATTTTATGTGC AGGAGGCTCGTGCGTATTTGCTTGAAGGAAGAGGAACAGACGTGCCAATC CTCTTCGCGGTCACACCGTCCTTGATTGTCAATGGCAATGGTTAGCATGA AAAGACGCTCATGCTGTAATGAGCGTGCTTGTTGCGCTCGGTTCACACGC CCATGTATGGCCAAAAGTAGGCCATGCACGTGGAATGAGCATTCATTGCA AGCGTGCCACTTCGGACCAGCTTTTGGCTGCAATGAGTTTCTCTAACTAA ACATGCAGCTCTCCCCTTGCTTTACATCTGATGCATTGTTTCAGCTGAAC CATGTTGGCATTGATATCAACCAGCATTGTAGAAATCACGCGGCATTGGT CATGGAACGCTCCTGCCGCATGATGCCGTAACTGCGATGTTTTTGCTGTT GCAGTTGAACAACGCGCTCAACGCCATCAGCGTCGGCCACACCGGGTTTC TCACGGCGCTTTATGAGAAGCGTCAGTGTGTGGACGCCAGGCTTGCCAAG GGCGCTACGCGCTGGGAGGTGAGCACTGCTTCATGTATTAGCATGTACTT GAGTGTACATTTGTGGGAGCATAAAGCTTCACTAGTGTCAGTGACATTTG GTTGAGTGGTGTACTTTCAAGCCAGTGGCATCAACCAGTGCTGTACTGTC TGAAACACGCCATCAAGTGTGCTGGACGTGTATACTGCATGTCCATGCTT GCAAGCAAGTGACAGCCATTTGCATCTGACGTATTGTTGCCTTTGACATG TACTGGCCTGCATTCTGAAGTCGCGACTTCAAAATATCACGATGCATTGA CGTAGGCTGGAATTGCCACCTTCATTCAAAGCATTGCATTTTCATCGCAC CATCTTCATCTGCTTGCTGCAGAAGTACGCCACTGCTGCTACATGCATCG TGTAGGCAGTAACAGCCATGGCATTGCTTGATGCAGGTAGCAGTTTCCGC CAAGTATTTTATTGCACAGCTTGCTCGCCACCGCCACCGCTCCATTCAGC TTACCACGGCACTCCCTCTGGCGGTGATGCACCCAATTAGGCTGGGTAGG ATGGTAGGCAGAGAGCAGGCACGATTATGTTCCATGCTCTATTTGTCATG CTGCACGCTTTGCACAAGATGCTCTGCTTTGTTTTAGTACCGCATAAGTG TGCAAGTACATGCGCAGTGCTTTTGACCTTGTTATATGTGATGGGCACTT GACATCAGACTGCGGTAATCACAGGTGTGCTAACACTCGTGTTGTGCACA CAGGCGGTGCGCCCTCTGGTCATCTCCAGCATGCGCACCGGTCTCACCCC CACACTCAACAACATGCGAGTGCTGGGGCTGGTGTCCATCCCTGGAATGA TGGCAAGTGCACAGGCTTGTGTGAATGTCATGTAGGGGGCAGTCAGCGAA TCATCTGCTACGCATGGCAGTACTTGAATGGCCTGCAACGTAGTTCTCAT GCGGCACACAGCATGGCAAATGCTGATGCAGCTGGCAAACAGCCTTCCTT CAAATGATCGCCACAGAAGCACTTCATGATTGCTGAATGGTTTGAAGTTG CATACCTGAGCAGCAATCCACAACACAACACCCTGCCATTGGCCACACTT GCAGCAGCTTAGCCCTTGCCCACCAGCCACAATGTGCAACACACTGCAGT TACGTGGAGCGCTGCTACCCTTATTGCATGCGGCTGTGCATCAACGACTC ATGCATGCAAGTCTGAGTCTTGTGAGTCTCAGCACCGTTGCATGCTGCGT GGCGACGTCTCTGCCGGCCTGCGGAACACCCAGTCCTGTTGCTGCCTTCG AGGATGAGCACTGTCAACTGCAGCTGACACTGCTGCCTGCTGCCCGCTGC TGCGCCAACTCTGCGGCCCACAGACGGGTCAGATACTGGGCGGCAACCCG CCCGAACAGGCGGCGCGGTACCAGATGATCATCTTCTTTCTCATCTGCGC GGCCTCCAGCATCGGCTTGCTAGGAGCAGTCGACCTGAGCATTGAGGTGA ATCACACACACTGACAACCTTCCGTAGCAGTAGCAATTGAGGTTGAGTGT CATATCACATTACTCATATGCATGCACGTGCGTCAGAACACTGTCATCAT TGTGCTCAGAACACCATGCCCCGTGCTCGCTGTAGCATGGCCAATGATTT GGCCGTGCTGCCGTGATGTTCTTGCACAGTGTTTTACTTGTTGAAGTGCG TTTCTTGGCATGTCAATAGTAGGCCCTGTCACAGGTGCAGCAAGCACCTC AGCTCCAATGGGCTGTGCCAGAGGCTCACGCACCGCCCCCCCCTCTGCAA ACCACCGAGGCGTATGCTTTGCTAGAGTGCACGCGCCTGCATGCAACTGT ACCTGCCTACCCCTTACGCTGCCTCCTGTTGAAACTGTTGTGCGCGGCAC GTGTGCAGGCGCTGTTTGATTCGGAGCACAGGCTGTGCGTCACATCACGG CTCAGCAGACGCCCCGGCGGCAAAGAAGACATTCTCACGGCAGCGTTCAA CGGCCTTCGGGGCCTCGTGAAAGAGTGCTGGTCGAAAATGAGGGACCGCA GTACGCGAGAGTACGCGATTGTGCGCGGAGACAGGTGAGGTCACTCAAAA CGCATCAAACAACATCACACACTGCGTGACTGCAACTGCTGTGCTTTTGC ACCATGAAGGGATGCATGCGTCCTCCTGTTCGCCATTGAGGCATGCATGT ACCTGGCATGAGTAGCAGTTTTGGTGGGTGAATGAGTCTGCTTTCCAACT AAAGTAGGAAGTATATGAATTACCTGGAAGCGCTGCCAATCCCACATGGC AGACGTGGCATATCAAGGTACCCTTGAAAAGCTCTGGCTCCTTCATCTGC ACGTATCATACATGTCACATCACGTGAGCGTGCTGACCCCCCTGCACATG TACTTCTGCTTTGTCACGACTCGGCTTTGCAGCTGGCGTACGAGCCCGGC TACTTCATCGGCAGTAGTCTGAACGTGACCCCGGGCGGCCTGTCAGGCGG AGCACTGCTGCTGTGCATCCTGAGCCGTGCTGCTGGCGGTGCAGCTCTCA GCAGAGCATCAAGTCAACACAAACACACACACAGCGAGATCCACATCAAC AACATCAGCAGCACTCAAAGCAGCCATGAGTTAGGCACGTGATTGCCGTG AAAAGAGGCTCTGCTTTCTGCTTTCTAGGTGGGAGGGACGGTATGGCACA GAGAGTAGGCATGGTTGCGGGCTTTCTACCAGCAGCGCACAATGGCGTAC ACTGCGCCAAGCCACTGCAGACTTCAAACCAATGGCACCTCTCAAAGAGG TGCATGAATCACAATTACAAAAAAAGGTGTTTACAAC
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Coding sequence (CDS) from alignment at Contig_42:263100..267636+

>mRNA_5633 ID=mRNA_5633|Name=jgi.p|Trimin1|349368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_42:263100..267636+ (Tribonema minus UTEX_B_3156 )
ATGGACTCAGCACAGTTGCAGATGGCGGCGGCCGACGCTGAAAATGCCGC
AATGGACGGCACCGTGGGCGGCAGCACCGTCCTGATAAGCTGGTCCCACG
TGTGCCTCGGCATTGCCACGGTCGGCGTCGCAGTGCTCATATCGTCGTGG
CAGAAGCTGGGCCTGGAGCGCGCGTACGTGGTGGCAACGGCGCGCGCGAC
TGTGCAGCTGGCAGTGCTCGGCTACGTTCTGGTGCCGTGCTTCAACCACC
CGCGCTGGTGGGCCTCGCTGCTCATCGTCAACTGCATGGGGCTCATAGCT
GCGCGCGAGGCCACAGCGCGCGCCAAATACGTCTACAAGGGCCTGTACGC
GCGTGTGTGGCTGAGCGTTGTGCTGCCCAGTATACTCGTACTCACGGGCG
CACTCATGTACATCATACCGGTGGAGCCGTGGTGGGCGCCGCAATACTTC
ATCACCATGGCTGGCATGATGTACTTCATCACCATGGCGGGCATGATGTT
GAACAACGCGCTCAACGCCATCAGCGTCGGCCACACCGGGTTTCTCACGG
CGCTTTATGAGAAGCGTCAGTGTGTGGACGCCAGGCTTGCCAAGGGCGCT
ACGCGCTGGGAGGCGGTGCGCCCTCTGGTCATCTCCAGCATGCGCACCGG
TCTCACCCCCACACTCAACAACATGCGAGTGCTGGGGCTGACGGGTCAGA
TACTGGGCGGCAACCCGCCCGAACAGGCGGCGCGGTACCAGATGATCATC
TTCTTTCTCATCTGCGCGGCCTCCAGCATCGGCTTGCTAGGAGCAGTCGA
CCTGAGCATTGAGGCGCTGTTTGATTCGGAGCACAGGCTGTGCGTCACAT
CACGGCTCAGCAGACGCCCCGGCGGCAAAGAAGACATTCTCACGGCAGCG
TTCAACGGCCTTCGGGGCCTCGTGAAAGAGTGCTGGTCGAAAATGAGGGA
CCGCAGTACGCGAGAGTACGCGATTGTGCGCGGAGACAGCTGGCGTACGA
GCCCGGCTACTTCATCGGCAGTAGTCTGA
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