mRNA_5517 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162137
Unique NamemRNA_5517
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CKM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM3_9STRA)

HSP 1 Score: 784 bits (2024), Expect = 1.740e-286
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 1
Query:    1 MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLLDGELRGRECACLCTSKYICCRALLGYMSRGSCLWRAHGSWLCLRTRCARVLPSNVH 1173
            MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLLDGELRGRECACLCTSKYICCRALLGYMSRGSCLWRAHGSWLCLRTRCARVLPSNVH
Sbjct:    1 MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLLDGELRGRECACLCTSKYICCRALLGYMSRGSCLWRAHGSWLCLRTRCARVLPSNVH 391          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835ZGF8_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF8_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 4.870e-143
Identity = 219/325 (67.38%), Postives = 252/325 (77.54%), Query Frame = 1
Query:   79 DTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPA-LRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATR---EGASLLLDGELRGRECACL 1041
            D T +QLEVLF+KCVTPGASI V + GGSITAG GA VGD N YIHR+A  V + CP A V+ +NAARGGTGSLTTGMCL N+LGP VDLLA+EFSLND EQYTVGG FSAAPYELL RAAL+A+ HAPA+Y ++FWG  F+H SAQ  HLAVAR YGVTGVSMRDVVW  LDA + PYAT++A+LAD +HHP+A VH HLGDI++LH+A+ L RWA A   A A  RR A  LLP A L  PLAPELA YDV A+ F CE+AG PREGP P+LY+  GW +F MGART  RLDSQ+CVQATR   EGASL++DGE     CA L
Sbjct:   11 DITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVL 335          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.440e-60
Identity = 120/260 (46.15%), Postives = 161/260 (61.92%), Query Frame = 1
Query:   64 LAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLAN 843
            L    + T+EQLE L+ KC+TPG+ I +G +GGSI+A    G    + Y   +   +Q  CP ATV   NAA G TGSL  GMC ++ LG HVD+L +EFSLND   Y   G+  +  YEL  RA L++F HAPA++ +FFWG+ FQ+ SAQ  H  +AR YG+TG+S+RD VWP L A   P+A R  V+ D+ HHP+ A HA+ G +++L++AE    WA    AA AL   AR  LP   LP PL    A+ D+LA+
Sbjct:   13 LTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGG----SNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDS-HHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALD-SARFALPPPTLPPPLNGVAARLDLLAD 266          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CKC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC8_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.140e-56
Identity = 117/282 (41.49%), Postives = 167/282 (59.22%), Query Frame = 1
Query:   85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPS-----LYQVDGW 915
            T  QL+VLF KC+TPGA I +G +GGSI+A       ++ +Y + +   ++  CP ATV   N AR   GSLT GMC +  LG HVD+L +EFSLND   Y    E + A YEL  R AL++F HAPA+ G+FFWG  F   SAQ  H  + + YGVTG+SMRD+VWP ++A   P+  R  V +D+ HHP+ AVH +  ++++L+++     W+         RR + +LLP  ALPEP++PEL + D++     C+   W  +    S     LY+ +GW
Sbjct:   69 TERQLQVLFWKCITPGARIVLGVLGGSISAF------EDVSYQYPLGKFLRGLCPFATVEVHNGARAAHGSLTVGMCARCGLGQHVDMLILEFSLNDWSHYHRHNETACASYELALRTALTSFQHAPAVLGLFFWGPYFTKQSAQDYHEPLCKHYGVTGISMRDLVWPYIEAQKAPWTKRTDVCSDS-HHPTPAVHLYTANLIALYVSGVFLDWSKNVTVTAPTRRLS-SLLPPLALPEPISPELGRLDLIRGKLKCK---WSIDSVYGSESRLELYENEGW 339          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.160e-54
Identity = 126/322 (39.13%), Postives = 175/322 (54.35%), Query Frame = 1
Query:   85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVG-GEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPRE-------------GPGPSLYQVDGWRKFEMGARTSARLDSQQCVQAT-REGASLLL 1005
            T++QL  LF KC+TPG++I +GA+GGSIT          ++YI  +   + + CP ATV   N AR   G+LT GMC + +  P +DL   EFSLNDR  YT   G FSA P+ELLTR  LSA+  APA++ +FFWG++F H SAQ  H AV   Y VTG+S+RD+VWP  + +  PYA R  V  D  HHP+        +++ L++A+  Q WAA AA         R  L    LP PLAP+L ++D+ +  F C + G  ++             G  P +  ++GW+           L    C+Q T  +GA  LL
Sbjct:   88 TDQQLHPLFLKCITPGSTIRIGALGGSITH-------LPSSYIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCARTVTAPALDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDG-HHPNDRFQKFTAELLLLYVAQRFQEWAAGAAKGGVDASIGRTPL---RLPPPLAPDLERFDLESAKFDCAIVGGSKDFGSAQAKQRGVLRGRLPEMSVMEGWQV----------LSDPPCIQVTDMQGAQALL 388          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835YLT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT4_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.870e-46
Identity = 122/312 (39.10%), Postives = 160/312 (51.28%), Query Frame = 1
Query:   64 LAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVG-----GEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPR-EGPG--PSLYQVDGWRKFEMGARTSARLDSQQCVQ 975
            L    + T+ QLE  F+KCVTPG+++ VGA+GGSIT           +Y+  + A +   CP A V+A+N AR   G+LT G+C + +    +D+   EF+LND  QYT       G+FSA PYEL+ R A                   F H SAQ AH  V RRYGVTG+S+RD+VWP   A   PYA R  V +D  HHP+A       ++V L+IAE    WA    +  A     R L PLA LP PL PEL ++D+    F C L G P  + PG  P +  + GWR  E            QC+Q
Sbjct:   74 LKLRGEVTDLQLEPFFRKCVTPGSAVRVGAIGGSITHA-------PTSYVWSLGALLGEMCPHANVTALNGARSSHGALTLGLCARAVTHAALDVAVAEFALNDLGQYTRAEGAFRGQFSALPYELMMRNA-------------------FTHESAQEAHEEVGRRYGVTGLSLRDLVWPYFTAKRAPYAARGDVCSDL-HHPNAQFQHFTAELVLLYIAERFVEWATRVRSGEASNAT-RGLAPLA-LPPPLHPELERFDLTHGGFECALVGAPSIKMPGRLPEMPVMSGWRVTEF----------PQCIQ 346          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.800e-43
Identity = 89/197 (45.18%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTV-GGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVH 672
            T  QL  +F KCVTPGA I VGA+GGSIT         ++++    +A +   CP A V   N AR   G+LT G+C + ++ P +D+  +EFSLND+ QYT+  G FS+ PYEL TR  L+     PA++GI FWG +F + SAQ  H  V + YGVTG+S+RD+VWP       P+AT+  V +D  HHP+A VH
Sbjct:   14 TEAQLRNVFLKCVTPGADINVGAIGGSITE-------HDDSWAGNFSALLSHLCPRAQVRMHNGARASHGALTLGLCARAVMAPELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVLTGTDPTPAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWPYFSKGRAPFATKADVCSDV-HHPNAFVH 202          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835YK35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK35_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.650e-40
Identity = 86/213 (40.38%), Postives = 123/213 (57.75%), Query Frame = 1
Query:   94 QLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLG--PHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRW 726
            Q++  F+KCVTPGA I VG +GGSI+     G G +  +I ++A      CP+A V   N AR  T S+T G C    +G    +DL   EF+ ND  +YT  G FS+ PYEL+ R+ L+AF ++P++  + FWG++F H + Q A + +ARRY V+ +S+RDV+WP   A   PY ++D    D RH PS AVH    D++  H       W
Sbjct:    7 QMQNFFRKCVTPGAVINVGILGGSISQ---FGYGYQVTFIKQLA----EMCPSAEVKLYNGARSSTPSMTLGYCAVTAMGGPSELDLFISEFTYNDGVKYTTDGAFSSLPYELMLRSVLTAFPYSPSVLTLHFWGLDFTHKTPQAALVKLARRYKVSALSIRDVIWPYYTAGRDPYGSKDKCTIDGRH-PSLAVHQLTADLLQTHFVTRFLAW 211          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836C984_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C984_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.060e-36
Identity = 100/282 (35.46%), Postives = 146/282 (51.77%), Query Frame = 1
Query:   82 TTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLG--PHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWP--REGPGPSLYQVDGW 915
            TT+ QL+  F+KCVTPG++I +G +GGSI+       G +  ++    A +Q+ CP +TV   N AR  TGS+T G C +  +G    VDL   EF+LND  +YT  G+FS+  YE L R  L+AF +APA+  +  WG  F + S Q A +A+A+RY ++ +S+RD VWP   A   P A++  V  D  H PSA VH    D++  ++      W  +A    A +      +   ALPE     L +Y V      C +       +G  P L    G+
Sbjct:   23 TTDTQLQNFFRKCVTPGSTINLGILGGSISQML---AGYQVTWL----AYLQQMCPTSTVKLYNGARPSTGSMTLGYCAKTSVGGPEQVDLFVTEFTLNDGSKYTTDGQFSSQSYEFLLRNTLTAFQYAPAIITLHLWGFPFVYDSPQPALVALAQRYALSAISIRDAVWPYYTAQREPLASKSEVTVDGIH-PSAYVHKFAADLLHTYVVGKFLEWVDSAIDGTASQTAGTEPV---ALPEASNSPLNKYKVEEAKIDCAIVPSKDREDGRAPVLIDPSGF 293          
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CAR2_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR2_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.600e-35
Identity = 105/310 (33.87%), Postives = 161/310 (51.94%), Query Frame = 1
Query:   85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQN-MLGPHVDLLAMEFSLNDREQY--TVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLL 1005
            T++QLE  +++CVT GA+I +G +GGSI+        D+  Y+   A  V+  CP+A V+  + AR   GSLT GMC    ML   +DL   +F+LND  +Y  T+ G F++ PYE++ R  L+ F   PA++ ++FWG  F + + Q     +A+ Y  TG+S+RD+VWP   + + P++T+D ++ D  HHP+  V    GD++ L++AE    W   A A  A         P+A LP P   +LA ++     F C L        G + Y V      EM   TS     + CV      AS ++
Sbjct: 1294 TDKQLENFYRRCVTSGATIHIGILGGSISV-------DKEGYVGMFANRVREMCPSAYVAVHSGARNAAGSLTLGMCASTAMLTTKLDLFVADFTLNDSYKYKHTIKGIFTSTPYEIMLRNVLTQFEVPPAVFNLYFWGGAFTYDTQQDELDTLAKLYSTTGISLRDLVWPFYTSGTLPFSTKDHIVKDI-HHPNRRVCQLTGDLLVLYMAERFVGWVDTALAGQA--SAVAGTFPVA-LPPPRNAQLADWNFTFK-FDCALVADAYRANGRTPYMV---ASNEMAVVTSP----EPCVTFGSANASAVV 1584          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A836CKM3_9STRA1.740e-286100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGF8_9STRA4.870e-14367.38SGNH_hydro domain-containing protein n=1 Tax=Tribo... [more]
A0A836CHL6_9STRA1.440e-6046.15Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CKC8_9STRA1.140e-5641.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZKB1_9STRA1.160e-5439.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLT4_9STRA3.870e-4639.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z775_9STRA2.800e-4345.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK35_9STRA1.650e-4040.38Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C984_9STRA4.060e-3635.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAR2_9STRA2.600e-3533.87RanBP2-type domain-containing protein n=1 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:691685..692860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162137|e_gw1.19.15.1
Descriptionlipolytic protein G-D-S-L family
COG categoryE
Max annot lvl2|Bacteria
EggNOG OGsCOG2755@1|root,COG2755@2|Bacteria
Evalue9.67e-11
Seed ortholog794903.OPIT5_05820
Hectar predicted targeting categorysignal peptide
TranscriptId162459
TrackFilteredModels1
ProteinId162137
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162137gene_5517Tribonema minus UTEX_B_3156 geneContig_19 691685..692860 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5517_1exon_5517_1Tribonema minus UTEX_B_3156 exonContig_19 691685..692860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5517CDS_5517Tribonema minus UTEX_B_3156 CDSContig_19 691685..692860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162137Trimin1|162137|e_gw1.19.15.1Tribonema minus UTEX_B_3156 polypeptideContig_19 691685..692860 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5517 ID=mRNA_5517|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1176bp|location=Sequence derived from alignment at Contig_19:691685..692860+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCATTTCGTGTGTGCGGCTTACACTGCGTTCTTGTTACCGCCTA
TACCGTGTTTCCTCTTGCTGCCAACGCAGACACGACAAACGAACAACTGG
AAGTACTCTTCCAGAAGTGTGTCACACCTGGCGCATCCATTACAGTAGGG
GCGGTAGGGGGTTCAATCACTGCTGGTGCTGGTGCTGGCGTCGGCGACGA
GAATGCCTACATCCACAGAATTGCCGCATCCGTGCAGCGCTTCTGTCCGG
CCGCAACCGTCTCCGCTGTCAACGCCGCGCGCGGCGGCACGGGCTCGCTC
ACCACCGGCATGTGCCTGCAGAACATGCTGGGGCCGCACGTGGACCTGCT
CGCGATGGAGTTCAGCCTCAACGACAGGGAGCAGTACACGGTGGGCGGCG
AGTTCAGCGCGGCGCCGTACGAACTGCTGACGCGCGCCGCGCTCAGCGCC
TTCGCGCACGCGCCCGCGCTCTACGGCATCTTCTTCTGGGGTGTCAACTT
CCAGCACGCATCGGCGCAGGGCGCGCACCTTGCCGTCGCGCGCCGCTACG
GCGTCACGGGCGTCTCCATGCGCGACGTCGTGTGGCCGTGCCTCGACGCC
GCGTCGCCGCCCTACGCCACGCGGGACGCCGTCCTCGCAGACGCGCGCCA
CCACCCCTCCGCCGCCGTTCACGCGCACCTCGGAGACATCGTCTCGCTCC
ACATCGCGGAGGCGCTGCAGCGCTGGGCGGCGGCTGCGGCGGCGGCGCCA
GCACTGCGCCGCGACGCGCGCGCGCTGCTGCCGCTGGCAGCGCTGCCGGA
GCCGCTGGCGCCCGAGCTCGCTCAATATGATGTGTTGGCCAACACGTTTC
ACTGCGAGCTGGCGGGCTGGCCGCGAGAGGGCCCGGGCCCGTCGCTGTAC
CAGGTGGATGGGTGGCGGAAGTTTGAGATGGGCGCCCGGACGAGCGCGCG
GCTGGACTCGCAGCAGTGCGTGCAGGCGACGCGGGAGGGCGCCAGCCTGC
TGCTGGACGGTGAGCTGCGCGGCAGAGAGTGCGCGTGCTTGTGTACTTCC
AAGTACATATGTTGCAGAGCTCTGCTGGGGTATATGTCGAGGGGTTCGTG
TCTGTGGCGTGCGCACGGGAGCTGGCTGTGCCTGCGTACGCGCTGTGCGA
GGGTCCTGCCCAGCAATGTACACTGA
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protein sequence of jgi.p|Trimin1|162137

>Trimin1|162137|e_gw1.19.15.1 ID=Trimin1|162137|e_gw1.19.15.1|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=392bp
MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVG
AVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSL
TTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSA
FAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDA
ASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAP
ALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLY
QVDGWRKFEMGARTSARLDSQQCVQATREGASLLLDGELRGRECACLCTS
KYICCRALLGYMSRGSCLWRAHGSWLCLRTRCARVLPSNVH*
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mRNA from alignment at Contig_19:691685..692860+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5517 ID=mRNA_5517|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1176bp|location=Sequence derived from alignment at Contig_19:691685..692860+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCATTTCGTGTGTGCGGCTTACACTGCGTTCTTGTTACCGCCTA TACCGTGTTTCCTCTTGCTGCCAACGCAGACACGACAAACGAACAACTGG AAGTACTCTTCCAGAAGTGTGTCACACCTGGCGCATCCATTACAGTAGGG GCGGTAGGGGGTTCAATCACTGCTGGTGCTGGTGCTGGCGTCGGCGACGA GAATGCCTACATCCACAGAATTGCCGCATCCGTGCAGCGCTTCTGTCCGG CCGCAACCGTCTCCGCTGTCAACGCCGCGCGCGGCGGCACGGGCTCGCTC ACCACCGGCATGTGCCTGCAGAACATGCTGGGGCCGCACGTGGACCTGCT CGCGATGGAGTTCAGCCTCAACGACAGGGAGCAGTACACGGTGGGCGGCG AGTTCAGCGCGGCGCCGTACGAACTGCTGACGCGCGCCGCGCTCAGCGCC TTCGCGCACGCGCCCGCGCTCTACGGCATCTTCTTCTGGGGTGTCAACTT CCAGCACGCATCGGCGCAGGGCGCGCACCTTGCCGTCGCGCGCCGCTACG GCGTCACGGGCGTCTCCATGCGCGACGTCGTGTGGCCGTGCCTCGACGCC GCGTCGCCGCCCTACGCCACGCGGGACGCCGTCCTCGCAGACGCGCGCCA CCACCCCTCCGCCGCCGTTCACGCGCACCTCGGAGACATCGTCTCGCTCC ACATCGCGGAGGCGCTGCAGCGCTGGGCGGCGGCTGCGGCGGCGGCGCCA GCACTGCGCCGCGACGCGCGCGCGCTGCTGCCGCTGGCAGCGCTGCCGGA GCCGCTGGCGCCCGAGCTCGCTCAATATGATGTGTTGGCCAACACGTTTC ACTGCGAGCTGGCGGGCTGGCCGCGAGAGGGCCCGGGCCCGTCGCTGTAC CAGGTGGATGGGTGGCGGAAGTTTGAGATGGGCGCCCGGACGAGCGCGCG GCTGGACTCGCAGCAGTGCGTGCAGGCGACGCGGGAGGGCGCCAGCCTGC TGCTGGACGGTGAGCTGCGCGGCAGAGAGTGCGCGTGCTTGTGTACTTCC AAGTACATATGTTGCAGAGCTCTGCTGGGGTATATGTCGAGGGGTTCGTG TCTGTGGCGTGCGCACGGGAGCTGGCTGTGCCTGCGTACGCGCTGTGCGA GGGTCCTGCCCAGCAATGTACACTGA
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Coding sequence (CDS) from alignment at Contig_19:691685..692860+

>mRNA_5517 ID=mRNA_5517|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1176bp|location=Sequence derived from alignment at Contig_19:691685..692860+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCATTTCGTGTGTGCGGCTTACACTGCGTTCTTGTTACCGCCTA
TACCGTGTTTCCTCTTGCTGCCAACGCAGACACGACAAACGAACAACTGG
AAGTACTCTTCCAGAAGTGTGTCACACCTGGCGCATCCATTACAGTAGGG
GCGGTAGGGGGTTCAATCACTGCTGGTGCTGGTGCTGGCGTCGGCGACGA
GAATGCCTACATCCACAGAATTGCCGCATCCGTGCAGCGCTTCTGTCCGG
CCGCAACCGTCTCCGCTGTCAACGCCGCGCGCGGCGGCACGGGCTCGCTC
ACCACCGGCATGTGCCTGCAGAACATGCTGGGGCCGCACGTGGACCTGCT
CGCGATGGAGTTCAGCCTCAACGACAGGGAGCAGTACACGGTGGGCGGCG
AGTTCAGCGCGGCGCCGTACGAACTGCTGACGCGCGCCGCGCTCAGCGCC
TTCGCGCACGCGCCCGCGCTCTACGGCATCTTCTTCTGGGGTGTCAACTT
CCAGCACGCATCGGCGCAGGGCGCGCACCTTGCCGTCGCGCGCCGCTACG
GCGTCACGGGCGTCTCCATGCGCGACGTCGTGTGGCCGTGCCTCGACGCC
GCGTCGCCGCCCTACGCCACGCGGGACGCCGTCCTCGCAGACGCGCGCCA
CCACCCCTCCGCCGCCGTTCACGCGCACCTCGGAGACATCGTCTCGCTCC
ACATCGCGGAGGCGCTGCAGCGCTGGGCGGCGGCTGCGGCGGCGGCGCCA
GCACTGCGCCGCGACGCGCGCGCGCTGCTGCCGCTGGCAGCGCTGCCGGA
GCCGCTGGCGCCCGAGCTCGCTCAATATGATGTGTTGGCCAACACGTTTC
ACTGCGAGCTGGCGGGCTGGCCGCGAGAGGGCCCGGGCCCGTCGCTGTAC
CAGGTGGATGGGTGGCGGAAGTTTGAGATGGGCGCCCGGACGAGCGCGCG
GCTGGACTCGCAGCAGTGCGTGCAGGCGACGCGGGAGGGCGCCAGCCTGC
TGCTGGACGGTGAGCTGCGCGGCAGAGAGTGCGCGTGCTTGTGTACTTCC
AAGTACATATGTTGCAGAGCTCTGCTGGGGTATATGTCGAGGGGTTCGTG
TCTGTGGCGTGCGCACGGGAGCTGGCTGTGCCTGCGTACGCGCTGTGCGA
GGGTCCTGCCCAGCAATGTACACTGA
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