mRNA_5517 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CKM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM3_9STRA) HSP 1 Score: 784 bits (2024), Expect = 1.740e-286 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 1 Query: 1 MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLLDGELRGRECACLCTSKYICCRALLGYMSRGSCLWRAHGSWLCLRTRCARVLPSNVH 1173 MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLLDGELRGRECACLCTSKYICCRALLGYMSRGSCLWRAHGSWLCLRTRCARVLPSNVH Sbjct: 1 MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLLDGELRGRECACLCTSKYICCRALLGYMSRGSCLWRAHGSWLCLRTRCARVLPSNVH 391
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835ZGF8_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF8_9STRA) HSP 1 Score: 423 bits (1087), Expect = 4.870e-143 Identity = 219/325 (67.38%), Postives = 252/325 (77.54%), Query Frame = 1 Query: 79 DTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPA-LRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATR---EGASLLLDGELRGRECACL 1041 D T +QLEVLF+KCVTPGASI V + GGSITAG GA VGD N YIHR+A V + CP A V+ +NAARGGTGSLTTGMCL N+LGP VDLLA+EFSLND EQYTVGG FSAAPYELL RAAL+A+ HAPA+Y ++FWG F+H SAQ HLAVAR YGVTGVSMRDVVW LDA + PYAT++A+LAD +HHP+A VH HLGDI++LH+A+ L RWA A A A RR A LLP A L PLAPELA YDV A+ F CE+AG PREGP P+LY+ GW +F MGART RLDSQ+CVQATR EGASL++DGE CA L Sbjct: 11 DITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVL 335
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA) HSP 1 Score: 206 bits (523), Expect = 1.440e-60 Identity = 120/260 (46.15%), Postives = 161/260 (61.92%), Query Frame = 1 Query: 64 LAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLAN 843 L + T+EQLE L+ KC+TPG+ I +G +GGSI+A G + Y + +Q CP ATV NAA G TGSL GMC ++ LG HVD+L +EFSLND Y G+ + YEL RA L++F HAPA++ +FFWG+ FQ+ SAQ H +AR YG+TG+S+RD VWP L A P+A R V+ D+ HHP+ A HA+ G +++L++AE WA AA AL AR LP LP PL A+ D+LA+ Sbjct: 13 LTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGG----SNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDS-HHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALD-SARFALPPPTLPPPLNGVAARLDLLAD 266
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CKC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC8_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.140e-56 Identity = 117/282 (41.49%), Postives = 167/282 (59.22%), Query Frame = 1 Query: 85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPS-----LYQVDGW 915 T QL+VLF KC+TPGA I +G +GGSI+A ++ +Y + + ++ CP ATV N AR GSLT GMC + LG HVD+L +EFSLND Y E + A YEL R AL++F HAPA+ G+FFWG F SAQ H + + YGVTG+SMRD+VWP ++A P+ R V +D+ HHP+ AVH + ++++L+++ W+ RR + +LLP ALPEP++PEL + D++ C+ W + S LY+ +GW Sbjct: 69 TERQLQVLFWKCITPGARIVLGVLGGSISAF------EDVSYQYPLGKFLRGLCPFATVEVHNGARAAHGSLTVGMCARCGLGQHVDMLILEFSLNDWSHYHRHNETACASYELALRTALTSFQHAPAVLGLFFWGPYFTKQSAQDYHEPLCKHYGVTGISMRDLVWPYIEAQKAPWTKRTDVCSDS-HHPTPAVHLYTANLIALYVSGVFLDWSKNVTVTAPTRRLS-SLLPPLALPEPISPELGRLDLIRGKLKCK---WSIDSVYGSESRLELYENEGW 339
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA) HSP 1 Score: 204 bits (520), Expect = 1.160e-54 Identity = 126/322 (39.13%), Postives = 175/322 (54.35%), Query Frame = 1 Query: 85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVG-GEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPRE-------------GPGPSLYQVDGWRKFEMGARTSARLDSQQCVQAT-REGASLLL 1005 T++QL LF KC+TPG++I +GA+GGSIT ++YI + + + CP ATV N AR G+LT GMC + + P +DL EFSLNDR YT G FSA P+ELLTR LSA+ APA++ +FFWG++F H SAQ H AV Y VTG+S+RD+VWP + + PYA R V D HHP+ +++ L++A+ Q WAA AA R L LP PLAP+L ++D+ + F C + G ++ G P + ++GW+ L C+Q T +GA LL Sbjct: 88 TDQQLHPLFLKCITPGSTIRIGALGGSITH-------LPSSYIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCARTVTAPALDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDG-HHPNDRFQKFTAELLLLYVAQRFQEWAAGAAKGGVDASIGRTPL---RLPPPLAPDLERFDLESAKFDCAIVGGSKDFGSAQAKQRGVLRGRLPEMSVMEGWQV----------LSDPPCIQVTDMQGAQALL 388
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835YLT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT4_9STRA) HSP 1 Score: 176 bits (447), Expect = 3.870e-46 Identity = 122/312 (39.10%), Postives = 160/312 (51.28%), Query Frame = 1 Query: 64 LAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVG-----GEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPR-EGPG--PSLYQVDGWRKFEMGARTSARLDSQQCVQ 975 L + T+ QLE F+KCVTPG+++ VGA+GGSIT +Y+ + A + CP A V+A+N AR G+LT G+C + + +D+ EF+LND QYT G+FSA PYEL+ R A F H SAQ AH V RRYGVTG+S+RD+VWP A PYA R V +D HHP+A ++V L+IAE WA + A R L PLA LP PL PEL ++D+ F C L G P + PG P + + GWR E QC+Q Sbjct: 74 LKLRGEVTDLQLEPFFRKCVTPGSAVRVGAIGGSITHA-------PTSYVWSLGALLGEMCPHANVTALNGARSSHGALTLGLCARAVTHAALDVAVAEFALNDLGQYTRAEGAFRGQFSALPYELMMRNA-------------------FTHESAQEAHEEVGRRYGVTGLSLRDLVWPYFTAKRAPYAARGDVCSDL-HHPNAQFQHFTAELVLLYIAERFVEWATRVRSGEASNAT-RGLAPLA-LPPPLHPELERFDLTHGGFECALVGAPSIKMPGRLPEMPVMSGWRVTEF----------PQCIQ 346
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.800e-43 Identity = 89/197 (45.18%), Postives = 121/197 (61.42%), Query Frame = 1 Query: 85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTV-GGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVH 672 T QL +F KCVTPGA I VGA+GGSIT ++++ +A + CP A V N AR G+LT G+C + ++ P +D+ +EFSLND+ QYT+ G FS+ PYEL TR L+ PA++GI FWG +F + SAQ H V + YGVTG+S+RD+VWP P+AT+ V +D HHP+A VH Sbjct: 14 TEAQLRNVFLKCVTPGADINVGAIGGSITE-------HDDSWAGNFSALLSHLCPRAQVRMHNGARASHGALTLGLCARAVMAPELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVLTGTDPTPAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWPYFSKGRAPFATKADVCSDV-HHPNAFVH 202
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A835YK35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK35_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.650e-40 Identity = 86/213 (40.38%), Postives = 123/213 (57.75%), Query Frame = 1 Query: 94 QLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLG--PHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRW 726 Q++ F+KCVTPGA I VG +GGSI+ G G + +I ++A CP+A V N AR T S+T G C +G +DL EF+ ND +YT G FS+ PYEL+ R+ L+AF ++P++ + FWG++F H + Q A + +ARRY V+ +S+RDV+WP A PY ++D D RH PS AVH D++ H W Sbjct: 7 QMQNFFRKCVTPGAVINVGILGGSISQ---FGYGYQVTFIKQLA----EMCPSAEVKLYNGARSSTPSMTLGYCAVTAMGGPSELDLFISEFTYNDGVKYTTDGAFSSLPYELMLRSVLTAFPYSPSVLTLHFWGLDFTHKTPQAALVKLARRYKVSALSIRDVIWPYYTAGRDPYGSKDKCTIDGRH-PSLAVHQLTADLLQTHFVTRFLAW 211
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836C984_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C984_9STRA) HSP 1 Score: 145 bits (367), Expect = 4.060e-36 Identity = 100/282 (35.46%), Postives = 146/282 (51.77%), Query Frame = 1 Query: 82 TTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLG--PHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWP--REGPGPSLYQVDGW 915 TT+ QL+ F+KCVTPG++I +G +GGSI+ G + ++ A +Q+ CP +TV N AR TGS+T G C + +G VDL EF+LND +YT G+FS+ YE L R L+AF +APA+ + WG F + S Q A +A+A+RY ++ +S+RD VWP A P A++ V D H PSA VH D++ ++ W +A A + + ALPE L +Y V C + +G P L G+ Sbjct: 23 TTDTQLQNFFRKCVTPGSTINLGILGGSISQML---AGYQVTWL----AYLQQMCPTSTVKLYNGARPSTGSMTLGYCAKTSVGGPEQVDLFVTEFTLNDGSKYTTDGQFSSQSYEFLLRNTLTAFQYAPAIITLHLWGFPFVYDSPQPALVALAQRYALSAISIRDAVWPYYTAQREPLASKSEVTVDGIH-PSAYVHKFAADLLHTYVVGKFLEWVDSAIDGTASQTAGTEPV---ALPEASNSPLNKYKVEEAKIDCAIVPSKDREDGRAPVLIDPSGF 293
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Match: A0A836CAR2_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR2_9STRA) HSP 1 Score: 148 bits (374), Expect = 2.600e-35 Identity = 105/310 (33.87%), Postives = 161/310 (51.94%), Query Frame = 1 Query: 85 TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQN-MLGPHVDLLAMEFSLNDREQY--TVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATREGASLLL 1005 T++QLE +++CVT GA+I +G +GGSI+ D+ Y+ A V+ CP+A V+ + AR GSLT GMC ML +DL +F+LND +Y T+ G F++ PYE++ R L+ F PA++ ++FWG F + + Q +A+ Y TG+S+RD+VWP + + P++T+D ++ D HHP+ V GD++ L++AE W A A A P+A LP P +LA ++ F C L G + Y V EM TS + CV AS ++ Sbjct: 1294 TDKQLENFYRRCVTSGATIHIGILGGSISV-------DKEGYVGMFANRVREMCPSAYVAVHSGARNAAGSLTLGMCASTAMLTTKLDLFVADFTLNDSYKYKHTIKGIFTSTPYEIMLRNVLTQFEVPPAVFNLYFWGGAFTYDTQQDELDTLAKLYSTTGISLRDLVWPFYTSGTLPFSTKDHIVKDI-HHPNRRVCQLTGDLLVLYMAERFVGWVDTALAGQA--SAVAGTFPVA-LPPPRNAQLADWNFTFK-FDCALVADAYRANGRTPYMV---ASNEMAVVTSP----EPCVTFGSANASAVV 1584 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162137 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5517 ID=mRNA_5517|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1176bp|location=Sequence derived from alignment at Contig_19:691685..692860+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTGCCCATTTCGTGTGTGCGGCTTACACTGCGTTCTTGTTACCGCCTAback to top protein sequence of jgi.p|Trimin1|162137 >Trimin1|162137|e_gw1.19.15.1 ID=Trimin1|162137|e_gw1.19.15.1|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=392bp MCPFRVCGLHCVLVTAYTVFPLAANADTTNEQLEVLFQKCVTPGASITVGback to top mRNA from alignment at Contig_19:691685..692860+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5517 ID=mRNA_5517|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1176bp|location=Sequence derived from alignment at Contig_19:691685..692860+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_19:691685..692860+ >mRNA_5517 ID=mRNA_5517|Name=jgi.p|Trimin1|162137|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1176bp|location=Sequence derived from alignment at Contig_19:691685..692860+ (Tribonema minus UTEX_B_3156 )back to top |