mRNA_5516 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA) HSP 1 Score: 549 bits (1415), Expect = 7.330e-198 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1 Query: 1 KEWAADQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLNGVAARLDLLADK 801 KEWAADQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLNGVAARLDLLADK Sbjct: 1 KEWAADQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLNGVAARLDLLADK 267
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A836CKC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC8_9STRA) HSP 1 Score: 298 bits (762), Expect = 9.050e-96 Identity = 146/262 (55.73%), Postives = 179/262 (68.32%), Query Frame = 1 Query: 16 DQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLNGVAARLDLLADK 801 DQL AL N G T+ QL+ L+ KCITPG+RIVLG LGGSISA +Y L KFL+ +CP ATV++HN A GSL +GMCAR GLGQHVD+L+LEFSLND++HYH +T +YELA+R LTSFQHAPA+ LFFWG F SAQ++H P+ +HYG+TGIS+RD VWPY+ AQ+APW R DV DSHHPT A H YT L+ALYV+ FLDW++ A LPP LP P++ RLDL+ K Sbjct: 55 DQLLLNALKNHGASTERQLQVLFWKCITPGARIVLGVLGGSISAFED--VSYQYPLGKFLRGLCPFATVEVHNGARAAHGSLTVGMCARCGLGQHVDMLILEFSLNDWSHYHRHNETACASYELALRTALTSFQHAPAVLGLFFWGPYFTKQSAQDYHEPLCKHYGVTGISMRDLVWPYIEAQKAPWTKRTDVCSDSHHPTPAVHLYTANLIALYVSGVFLDWSKNVTVTAPTRRLSSLLPPLALPEPISPELGRLDLIRGK 314
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A836CKM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM3_9STRA) HSP 1 Score: 224 bits (571), Expect = 6.250e-68 Identity = 120/260 (46.15%), Postives = 161/260 (61.92%), Query Frame = 1 Query: 37 LTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGG----SNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDS-HHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALD-SARFALPPPTLPPPLNGVAARLDLLAD 798 L + T+EQLE L+ KC+TPG+ I +G +GGSI+A G + Y + +Q CP ATV NAA G TGSL GMC ++ LG HVD+L +EFSLND Y G+ + YEL RA L++F HAPA++ +FFWG+ FQ+ SAQ H +AR YG+TG+S+RD VWP L A P+A R V+ D+ HHP+ A HA+ G +++L++AE WA AA AL AR LP LP PL A+ D+LA+ Sbjct: 22 LAANADTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPALRRDARALLPLAALPEPLAPELAQYDVLAN 281
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA) HSP 1 Score: 222 bits (565), Expect = 1.870e-62 Identity = 120/263 (45.63%), Postives = 160/263 (60.84%), Query Frame = 1 Query: 16 DQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYH-NRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLNGVAARLDLLADK 801 D+L++ +L +RG TD+QL L+ KCITPGS I +G LGGSI+ P S+Y + + + MCP+ATV+ N A + G+L LGMCAR+ +D+ + EFSLND HY + G + +EL R L+++ APA+FNLFFWG+ F + SAQ +H + HY +TGISLRD VWPY +AP+A R DV D HHP + F +T LL LYVA+RF +WA AA A P LPPPL R DL + K Sbjct: 74 DRLFENSLKHRGAITDQQLHPLFLKCITPGSTIRIGALGGSITHLP---SSYIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCARTVTAPALDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDGHHPNDRFQKFTAELLLLYVAQRFQEWAA--GAAKGGVDASIGRTPLRLPPPLAPDLERFDLESAK 331
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A835ZGF8_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF8_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.380e-57 Identity = 110/255 (43.14%), Postives = 155/255 (60.78%), Query Frame = 1 Query: 58 TDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMT------LQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKD-SHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALD--SARFALPPPTLPPPLNGVAARLDLLA 795 T++QLE L+ KC+TPG+ IV+ GGSI+A GG++ G L + + +CP A V NAA G TGSL GMC + LG VD+L +EFSLND+ Y G + YEL +RA LT++QHAPA+++++FWG F++ SAQE H +AR YG+TG+S+RD VW L A+ AP+A + ++ D HHP H + G +LAL++A++ + WA D A A + A LP L PL A D+ A Sbjct: 13 TEQQLEVLFEKCVTPGASIVVASTGGSITA--GGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAA 265
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A836C984_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C984_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.130e-56 Identity = 109/245 (44.49%), Postives = 142/245 (57.96%), Query Frame = 1 Query: 37 LTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLG--QHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLN 765 L N G TD QL+ + KC+TPGS I LG LGGSIS AG Y +T +LQ MCP +TV+L+N A +TGS+ LG CA++ +G + VD+ + EF+LND + Y GQ S +YE +R LT+FQ+APAI L WG F S Q +A+ Y L+ IS+RDAVWPY TAQR P A++ +V D HP+ H + LL YV +FL+W D A S P LP N Sbjct: 17 LNNTGATTDTQLQNFFRKCVTPGSTINLGILGGSISQMLAG---YQVTWLAYLQQMCPTSTVKLYNGARPSTGSMTLGYCAKTSVGGPEQVDLFVTEFTLNDGSKYTTDGQFSSQSYEFLLRNTLTAFQYAPAIITLHLWGFPFVYDSPQPALVALAQRYALSAISIRDAVWPYYTAQREPLASKSEVTVDGIHPSAYVHKFAADLLHTYVVGKFLEWV--DSAIDGTASQTAGTEPVALPEASN 256
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A835YLT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT4_9STRA) HSP 1 Score: 197 bits (500), Expect = 2.270e-55 Identity = 113/263 (42.97%), Postives = 150/263 (57.03%), Query Frame = 1 Query: 16 DQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHN-----RGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLNGVAARLDL 789 D+L++ +L RGE TD QLE + KC+TPGS + +G +GGSI+ P ++Y +L L MCP A V N A + G+L LG+CAR+ +DV + EF+LND Y RGQ + YEL +R T + SAQE H + R YG+TG+SLRD VWPY TA+RAP+AARGDV D HHP F +T L+ LY+AERF++WA R + A ++ R L P LPPPL+ R DL Sbjct: 67 DRLFENSLKLRGEVTDLQLEPFFRKCVTPGSAVRVGAIGGSITHAP---TSYVWSLGALLGEMCPHANVTALNGARSSHGALTLGLCARAVTHAALDVAVAEFALNDLGQYTRAEGAFRGQFSALPYELMMRNAFT-------------------HESAQEAHEEVGRRYGVTGLSLRDLVWPYFTAKRAPYAARGDVCSDLHHPNAQFQHFTAELVLLYIAERFVEWATRVRSGEASNATR-GLAPLALPPPLHPELERFDL 306
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A836C8S8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S8_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.640e-50 Identity = 93/218 (42.66%), Postives = 128/218 (58.72%), Query Frame = 1 Query: 37 LTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLG--QHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDW 684 L N G TD QL + KC+TPGS I LG LGGSIS G Y + L+ MCP +++ L++ A +TGS+ LG CA++ +G + VD+ + EF+LND + Y G S +YE +R +T+F++APAI L FWG F SAQ +A+ Y L+ IS+RDAVWPY TAQR P A + KD HP++ LL Y+ ++FL W Sbjct: 1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTG---YQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 215
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A836CCV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV4_9STRA) HSP 1 Score: 184 bits (466), Expect = 4.020e-50 Identity = 102/251 (40.64%), Postives = 138/251 (54.98%), Query Frame = 1 Query: 16 DQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHY-HNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALDSARFALPPPTLPPPLN 765 DQL++ +L +RG TD QLE + KC+T GS I +G +GGS + P ++ + LQ MCP TV N A G+ GSL LGMC ++ +D+ EF+LND Y H G T S YEL R L ++ APA+F+LF WG F+ SAQ PI +Y +T +SLRD VWPY+ + PW + + +D +H + Y RL LY+ ERF +WA R +A L P LP PLN Sbjct: 79 DQLFRNSLVHRGGITDLQLEIFFRKCVTAGSVINVGAIGGSNTQLPW---SFLWPVVDMLQEMCPKTTVTGFNGARGSHGSLTLGMCVKTVTAPELDIAFAEFALNDEGQYRHQNGNTSSFPYELMTRTMLANYDPAPAVFSLFMWGRNFKFDSAQADLEPIVEYYNVTALSLRDLVWPYVMDEAEPWPSVARLTRDKNHAIASIQHYVARLFVLYICERFQEWAARISDGTFDPNA--GLSPVVLPAPLN 324
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Match: A0A835YI83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI83_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.230e-49 Identity = 103/251 (41.04%), Postives = 139/251 (55.38%), Query Frame = 1 Query: 16 DQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLG-QHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDWARR---DDAAAALDSARFALPPPTLPP 756 D L++ +L + G TD QLE ++ KC+ G I LG+ MCP + V LHN + G+TGSL LGMCA + + + VD+ + EF+LND T Y + S YEL +R LT+F+ PAIFNL+FWG G + Q + + + Y LTGIS+RD VWP+ + RAP+A R DV D HHPT H +T LL LY++ F WA + AA ALD ++ LPPP PP Sbjct: 82 DLLFKNSLKDDGAVTDRQLENVFRKCVK-GDTIRLGE-------------------------MCPLSEVILHNGSRGSTGSLTLGMCATTAMDTKAVDIFIAEFALNDTTQYTLKTGFSSLPYELMLRDALTAFEVPPAIFNLYFWGPGLTYKTGQPEYVALEKKYQLTGISIRDLVWPFYSHHRAPYALRSDVAVDIHHPTRQIHQHTADLLTLYMSFHFNAWAGKAVTGAAALALDKSQLELPPPANPP 306 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130071 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5516 ID=mRNA_5516|Name=jgi.p|Trimin1|130071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=801bp|location=Sequence derived from alignment at Contig_19:689953..690944- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGGAATGGGCTGCGGACCAGCTGTGGCAGACGGCCCTCACAAATCGGGGback to top protein sequence of jgi.p|Trimin1|130071 >Trimin1|130071|gw1.19.12.1 ID=Trimin1|130071|gw1.19.12.1|Name=jgi.p|Trimin1|130071|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=267bp KEWAADQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADback to top mRNA from alignment at Contig_19:689953..690944- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5516 ID=mRNA_5516|Name=jgi.p|Trimin1|130071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=992bp|location=Sequence derived from alignment at Contig_19:689953..690944- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_19:689953..690944- >mRNA_5516 ID=mRNA_5516|Name=jgi.p|Trimin1|130071|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=801bp|location=Sequence derived from alignment at Contig_19:689953..690944- (Tribonema minus UTEX_B_3156 )back to top |