mRNA_5424 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348755
Unique Name	mRNA_5424
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348755 vs. uniprot
Match: A0A836CF11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF11_9STRA)

HSP 1 Score: 334 bits (857), Expect = 3.680e-116
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1

Query:    1 RCSAWEKGAWEEGSTGVICARPVKDLLNQEQFKSIRGAFEEWSEEELAAVDRSQLADIFEKNQRQIAIAHKFYKAVQAHLKPGPKLILLHEYGLDSDDPAAEDSATSRVEVPDAADLSRLFSGLGAYGLSKKDDPVQAIRSFDALEPGAEYWPVFAKGSRLSSAG 495
            RCSAWEKGAWEEGSTGVICARPVKDLLNQEQFKSIRGAFEEWSEEELAAVDRSQLADIFEKNQRQIAIAHKFYKAVQAHLKPGPKLILLHEYGLDSDDPAAEDSATSRVEVPDAADLSRLFSGLGAYGLSKKDDPVQAIRSFDALEPGAEYWPVFAKGSRLSSAG
Sbjct:    1 RCSAWEKGAWEEGSTGVICARPVKDLLNQEQFKSIRGAFEEWSEEELAAVDRSQLADIFEKNQRQIAIAHKFYKAVQAHLKPGPKLILLHEYGLDSDDPAAEDSATSRVEVPDAADLSRLFSGLGAYGLSKKDDPVQAIRSFDALEPGAEYWPVFAKGSRLSSAG 165

[Close]

BLAST of jgi.p|Trimin1|348755 vs. uniprot
Match: A0A836CN58_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN58_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.810e-17
Identity = 50/82 (60.98%), Postives = 55/82 (67.07%), Query Frame = 1

Query:   16 EKGAWEEGSTGVICARPVKDLLNQEQFKSIRGAFEEWSEEELAAVDRSQLADIFEKNQRQIAIAHKFYKAVQ----AHLKPG 249
            EK      S     +  VKDLLNQEQFK IRG FE W EE LAAVD+SQ ADIF  NQ+QIAIAHKF+K V+    A LKPG
Sbjct:  115 EKVGCSYSSMSSSSSSSVKDLLNQEQFKLIRGVFESWREEALAAVDKSQFADIFGGNQQQIAIAHKFHKTVRDLQAAQLKPG 196

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348755 vs. uniprot

BLAST of jgi.p|Trimin1|348755 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CF11_9STRA	3.680e-116	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CN58_9STRA	1.810e-17	60.98	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_30	contig	Contig_30:866950..870947 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348755\|estExt_Genemark1.C_Ctg_300123
Hectar predicted targeting category	other localisation
TranscriptId	349077
Track	FilteredModels1
ProteinId	348755

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348755	gene_5424	Tribonema minus UTEX_B_3156	gene	Contig_30 866950..870947 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5424_1	exon_5424_1	Tribonema minus UTEX_B_3156	exon	Contig_30 866950..867016 +
exon_5424_2	exon_5424_2	Tribonema minus UTEX_B_3156	exon	Contig_30 870041..870220 +
exon_5424_3	exon_5424_3	Tribonema minus UTEX_B_3156	exon	Contig_30 870697..870947 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5424	CDS_5424	Tribonema minus UTEX_B_3156	CDS	Contig_30 866950..867016 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348755	Trimin1\|348755\|estExt_Genemark1.C_Ctg_300123	Tribonema minus UTEX_B_3156	polypeptide	Contig_30 866950..870947 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_30:866950..870947+
coding sequence from alignment at Contig_30:866950..870947+

spliced messenger RNA

>mRNA_5424 ID=mRNA_5424|Name=jgi.p|Trimin1|348755|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=498bp|location=Sequence derived from alignment at Contig_30:866950..870947+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGTGTTCTGCCTGGGAGAAGGGAGCTTGGGAAGAAGGGAGCACTGGAGT
GATTTGTGCAAGGCCAGTCAAAGACCTGCTTAACCAGGAGCAGTTCAAAT
CCATCAGAGGAGCCTTTGAGGAGTGGAGCGAGGAGGAATTGGCTGCAGTT
GACAGGTCTCAACTCGCCGACATCTTCGAGAAGAATCAGCGGCAGATTGC
CATCGCGCACAAGTTCTATAAAGCCGTACAGGCCCACCTCAAGCCAGGGC
CGAAATTGATCCTGCTGCACGAGTATGGCCTGGACAGTGACGACCCGGCA
GCAGAAGACTCAGCCACCAGTCGAGTGGAGGTGCCGGATGCAGCTGACCT
CAGTCGGCTCTTCAGCGGACTCGGCGCTTACGGCCTGTCCAAAAAGGATG
ATCCAGTGCAGGCAATCCGCAGCTTTGACGCGCTGGAACCTGGCGCCGAG
TACTGGCCAGTCTTTGCCAAGGGCAGCAGGCTGAGCTCCGCTGGCTGA

protein sequence of jgi.p|Trimin1|348755

>Trimin1|348755|estExt_Genemark1.C_Ctg_300123 ID=Trimin1|348755|estExt_Genemark1.C_Ctg_300123|Name=jgi.p|Trimin1|348755|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=166bp
RCSAWEKGAWEEGSTGVICARPVKDLLNQEQFKSIRGAFEEWSEEELAAV
DRSQLADIFEKNQRQIAIAHKFYKAVQAHLKPGPKLILLHEYGLDSDDPA
AEDSATSRVEVPDAADLSRLFSGLGAYGLSKKDDPVQAIRSFDALEPGAE
YWPVFAKGSRLSSAG*

mRNA from alignment at Contig_30:866950..870947+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5424 ID=mRNA_5424|Name=jgi.p|Trimin1|348755|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3998bp|location=Sequence derived from alignment at Contig_30:866950..870947+ (Tribonema minus UTEX_B_3156 )
CGGTGTTCTGCCTGGGAGAAGGGAGCTTGGGAAGAAGGGAGCACTGGAGT
GATTTGTGCAAGGCCAGGTAAGCAGCGCGCATCAGCAGCGGCGGCCACAA
TGTCTCTTGTCGCCGATTCGTCAAGCACAGTTCTTCCGACCTGTCTGTGG
GGCTTGGATCCACAAGGTGGCACTGACCTCGAGGGCGTGCGGCACATTTC
TGGCTCCAACATCACACTTGATGGCTCCGACATCACTCTCGATGCCGGAT
GTAAACGTGGCTTCATGTCTGCATGTTGACGTGAGGAAATATGTACATAT
GTATATTAATGCTGTTATCTTAAACGTGTACTGTGGGAGGCCAGGAAGTT
GCTTATGAAATCCTCATTATGTAGTAGACGCCGCAGAGCGGCCGCAGGAG
CAGCAGCAGCCGCAAGTCGTTGTACTGTGTAGCGCGCTGTGTCTCAAGTC
GCAGCTCTTCAGCGGAGCATCACATATAGCCCCAGCACCAGTAGTCTTTT
CCATCGCCATTGTCTAGTCAGCAGCAGCAGCAGCCACATCTGTTGCTCCC
TTACTTTGCCTACCCCTCTTTCTGAAAAGGAGTTCTTTCCCTCTCGTGTA
GGCGGCTGACGTGGGGACGCACGAGAAGCTGACAGAGGAAAGTGTTCGTT
CTTCAAAGCATGAGCAGCAGCAGCAGTGGTGAGTGCAGCAATCCTCAGTT
GGAAGCTGTGTCAAAGCCTAATGACTAATGATCACGGCAAACCTCCCAGC
CATGTTTGTGTGACCCGTGGTTAATGATGGTGAGAAGAAGCTCGCACAAT
TGCAAGAGATAACTGAGAACCTAACATGCTTTTCGTGTGCGTTTCAGTAT
GTAACTGAAAGAGCAATGCACTGCTTGTGCATTTCGACTTATAGCTGTGG
CAGCCACGCCGTCTCTGCGGGAGACAGTGCCAAAAGAAGTTTCTCTGCAG
GAGACAGTGCCAAAGAGGTTGCTGTTAGCGGCCTTTTGTCCTCTGTAGGC
CTCGTGTGCTCTCAACCCATCTTTAGAGTAGTCCGAGCTTGTCAATTTCT
TCATTTCTCTGAAAACACAAGATGCACACATGTATGACACGCGCTATGCC
AACACGTGTCCATGGTACATAATAATACCCTTGATTGAGCTGTGCATGAC
TGTATGCCGCGTTCAAAGTGAGCTTTGGGACTTGTGGCGACCTGACAAAA
TGACAATAATCTTGCGCACCAGCATCTACTGTAGAAACGCTTGCAGACTT
GGGGAACTAGACGATTGCTATGCGCATCTCTTGATCGGCATCTGCACTCG
TGCTGTACGATTTTTGTCTGATCTTCGCTTTCCACAGGTTGAAGCCTTTT
ATTGCTACATACATAGGGTTGTGAACCGTGTATAATGTAGAAGTATATAT
ATAAACGTATGATAACGTACAAAGTATAGCGTATACATGCGCGTCCAAGC
GGGAAAGCTATACGTTCTGTACGGTGTGCAGTTTTCGGGTGCAGCACTGA
TCCTCGTGTTTCATCACTGCTGCGCAGCATCACAGTGTTATCGGCACAGA
ATCTGGCGAACCTTTGGTCATGTGCTGGTGCCTGAAGCTGCTGCTGCTGC
TGGTGCTGCTGCCCCGTGCTTGTGCTTGGCTAGCATGCATGTATCTGAGC
ACGAAGCAGCTGGTAGCGCCATAGCATCAATGACCATTGGTGCAGCAGCA
GCAGCACAGCAGCAGCGTGCAGCAGCATCGCAGCAGCAGCATCAGCAGCA
GCAGCGTGCAGCAGCATCGCAGCAGCAGCATCAGCAGCAGCATCAGCAGC
ACGCAGCTGCTGCTTCTGCTGCGCGTGTATCGATCAGCAGCAGCAGCAGG
CAGTGATGCACTAAAGGCGACAGCCATGGACTCAGTGCGAAGTCACTGCC
ACTGCTAGCCACACGCGCTGTGGACCACACCACACACACACCTCTTTATT
CACACCGGGACATGCCTCGAGGAACAGTCTTTTGGACCGCATTGGGGACG
TGATGTTCAGACGTATACCTTTCCAATATGCCAGGTTGAATGCAGTGCAC
CAGCTGATATTCGCATCTCACATCAGCCTATCAGCTAAATTTCTAACCAT
GTGTCATGCAATCAGCCACCCAAGGCAGCTAGACTATTGAGTAAACTATG
GAGACAATGACATTAGATCACAAACCTCACCCTTTTGGTGCTCTGTGTCC
AGCGTGCTCATGAGGGCTAAGCAGTCCCACAGCTTCAGTGACGACGAGCT
GCATCGCATGCCAACATGCTTGCTTGTATGCTGTTCAGCCATGGCTGTTT
CTCAGCCGGTGGTCAGCGGCCAATATTATAGTATTCCAATGTTTGTACTC
AAAGCAGCGATTGATGTGTACTCAAAGCAGCGATTGATGTTCAACTTATC
AAGCAGTGGCAATACCAGTTCAAAACTGGCAGTTCTGCATTCCGTACACC
ATTGCCATCACACGCGAAAAGGAAAATTTTGGAACGGAGTGCATCTCCAT
GTTAGGCCTAATCAATAGAAGTATACGTTGCTACATGAAAATTAACATAT
AATGGGATTGCAGCGCCTGTAAGAAACTACCCAGAGTCTTCACAAGCTGT
GAAGTTTGCATTCATATATCGGGATTGTATCATACGTTATACACAGTATA
ATTTTCATACTGTACGCCAGCGCACAACCCCATGCATATCATATGCACGC
CGTCCGTGTATTTTTGTCCGATACTCGCTGCAGTGTTTGCCCCCTTTGCT
GCTTCTGCCGCTTCTGCCTAAATCTGATGTTACATCGTTCTTGAGCGGCA
CTTGCGTGGCAGGCTTGCCTGATTGATGACTGACAAATTCTCACAAACGA
GCCAGAATGTTGTGCTGCCGTGGCTGTTTTTATGCCATGTATGCTGTGAC
ACTTGTCTGCACAACGAGCTGCCAGCTTTGCTGTGCAGACCAGTTGCTCA
TGAGCTTCAGACGTGGCGGGCACGTTCCCGTTTGTGGTTCGCACAGCGCA
GTGCATTAGTTGCGGTCAGTTTCTTTGTTCAATTGCTGCGCAACACAGTG
CTGGTAACACCATATCGTCATGACCCATGCTTGTTTTGCAGTCAAAGACC
TGCTTAACCAGGAGCAGTTCAAATCCATCAGAGGAGCCTTTGAGGAGTGG
AGCGAGGAGGAATTGGCTGCAGTTGACAGGTCTCAACTCGCCGACATCTT
CGAGAAGAATCAGCGGCAGATTGCCATCGCGCACAAGTTCTATAAAGCCG
TACAGGCCCACCTCAAGCCAGGTGCGCACAATGTCAATGTATATGTTTAA
AATTTGTTGGAATGTGCCTTACACCCTGTGGATCTGCACGACAATGTGAC
CATATGCCACCGTTAATCTCAGCAATGTGACAGCAATGCAGAAGCATCAT
CTGGCACTAAGCCGTGACGGTGCACAGCAACGTCAGAGTTCCAGTTCTTG
GTCAACCGTTCCTACACAGTAGTGATGGCGCTGCAGTGTGCTTGGTGTGT
GGACGTGCACATTGCACTCGTGTACAGGTTGGCGTCTACAAAGGCTCGGT
GTTGCTTGCGTCATCCGGTGTCCGCTGCTACGTCTGCTTCACGAGCCTTG
TTCGACAGACGTCATGAGGATGATTGACGAGCGACTCACATGTTCCTCAA
TTAATAATATGCATGCCTTTTTGTTGTTGGAAGGCTTCAACGGCAAATCT
GATGAGCACACCTGACGCACTGCAGTGCTCGACAATGCGCTTTGCAGGGC
CGAAATTGATCCTGCTGCACGAGTATGGCCTGGACAGTGACGACCCGGCA
GCAGAAGACTCAGCCACCAGTCGAGTGGAGGTGCCGGATGCAGCTGACCT
CAGTCGGCTCTTCAGCGGACTCGGCGCTTACGGCCTGTCCAAAAAGGATG
ATCCAGTGCAGGCAATCCGCAGCTTTGACGCGCTGGAACCTGGCGCCGAG
TACTGGCCAGTCTTTGCCAAGGGCAGCAGGCTGAGCTCCGCTGGCTGA

Coding sequence (CDS) from alignment at Contig_30:866950..870947+

>mRNA_5424 ID=mRNA_5424|Name=jgi.p|Trimin1|348755|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=498bp|location=Sequence derived from alignment at Contig_30:866950..870947+ (Tribonema minus UTEX_B_3156 )
CGGTGTTCTGCCTGGGAGAAGGGAGCTTGGGAAGAAGGGAGCACTGGAGT
GATTTGTGCAAGGCCAGTCAAAGACCTGCTTAACCAGGAGCAGTTCAAAT
CCATCAGAGGAGCCTTTGAGGAGTGGAGCGAGGAGGAATTGGCTGCAGTT
GACAGGTCTCAACTCGCCGACATCTTCGAGAAGAATCAGCGGCAGATTGC
CATCGCGCACAAGTTCTATAAAGCCGTACAGGCCCACCTCAAGCCAGGGC
CGAAATTGATCCTGCTGCACGAGTATGGCCTGGACAGTGACGACCCGGCA
GCAGAAGACTCAGCCACCAGTCGAGTGGAGGTGCCGGATGCAGCTGACCT
CAGTCGGCTCTTCAGCGGACTCGGCGCTTACGGCCTGTCCAAAAAGGATG
ATCCAGTGCAGGCAATCCGCAGCTTTGACGCGCTGGAACCTGGCGCCGAG
TACTGGCCAGTCTTTGCCAAGGGCAGCAGGCTGAGCTCCGCTGGCTGA