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Homology
BLAST of jgi.p|Trimin1|348853 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA) HSP 1 Score: 313 bits (802), Expect = 1.430e-105 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 2
Query: 11 MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAGKAGIVEGLKGKAAAAVAAPKXXXXXXXXXAAP 706
MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAGKAGIVEGLKGKAAAAVAAPKXXXXXXXXXAAP
Sbjct: 1 MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAGKAGIVEGLKGKAAAAVAAPKXXXXXXXXXAAP 232
BLAST of jgi.p|Trimin1|348853 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 6.200e-14 Identity = 96/199 (48.24%), Postives = 123/199 (61.81%), Query Frame = 2
Query: 14 VKAIAAAAAIAACATSADAFAVPGSVRPA---VARRGMTMAVSKGS---VQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPF 592
+K +A A A+AACA ADAF GS+RPA + R G + +V + V +LL +TE+LKLL XXXXXXXXXXXX TL+D+E LP +D+ D I L K + PDLL +AP XXXXXXXXXXXXXXXXX G A + +PDDS+ +IA++ F+A PLL + P V LT +G+LV F
Sbjct: 1 MKTVAFACAVAACAGGADAFV--GSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDF 197
BLAST of jgi.p|Trimin1|348853 vs. uniprot
Match: A0A6U1PC24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PC24_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 5.610e-13 Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 2
Query: 128 VSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTK 565
V + ++ E LIK E LKLL+ S ++L LE L D+ + ++ S + PKA++ LL GAA S AG AI AIPDDSI +ALQ+F+A+PL+ + PGAAVVG+ VL+K
Sbjct: 49 VEEEAIAETLIKAENLKLLTRVSKLGLLSKAEKFGISLSKLEPFLKLADESGVLLELEKSSAKTFPLLPKAVDQAPALLSLAESALALNPSVLLAGAAASAAAGAYAIYAIPDDSITNMALQSFIAIPLIAVIPGAAVVGSTVLSK 194
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|348853|estExt_Genemark1.C_Ctg_320056 |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | Protein of unknown function DUF1118 |
| Ec32 ortholog | Ec-23_001580.1 |
| TranscriptId | 349175 |
| Track | FilteredModels1 |
| ProteinId | 348853 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5210 ID=mRNA_5210|Name=jgi.p|Trimin1|348853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=707bp|location=Sequence derived from alignment at Contig_32:451406..455680- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CCCGCACACCATGGTCAAGGCAATCGCCGCTGCCGCTGCCATCGCTGCGT
GCGCGACCTCGGCGGATGCATTCGCAGTCCCAGGCTCCGTGCGGCCTGCT
GTGGCGCGGAGGGGCATGACCATGGCGGTGAGCAAAGGGAGCGTGCAGGA
GCTGCTGATTAAGACTGAGGAGCTGAAGCTGCTTTCCACGGCATCGCGCC
TCGGCCTCCTCTCCAAGCTCGAGCGCGCGGGCCTCACGCTGCGCGACCTC
GAGGCCGCGCTCCCCTTCCTGGACGACATCGACGCCATCGCGCTCGGCAA
AGAGCTCTCGCCCGACCTCCTCGCGATCGCGCCCAAGGCCCTCGAGGCGG
CCCCCGCGCTGCTCCCCCTCGCCGCGGCAGCGCTCGACATACCCCCCAGC
GCGCTGCTCACCGGCGCCGCGCTGAGCGTTGTGGCGGGGCTCGCCGCGAT
CGCCGCGATACCGGACGACTCGATCGGCGCCATCGCGCTGCAGGCGTTCC
TCGCGGTGCCGCTGCTGGTGCTCGCGCCCGGCGCCGCGGTGGTCGGCGCG
GGCGTGCTGACCAAGGCCAACGACGGCACGCTCGTGCCGTTCGCCAAGGA
GATTGCGGGCAAGGCGGGCATCGTCGAGGGCCTCAAGGGCAAGGCGGCTG
CGGCTGTGGCTGCCCCCAAGGCTGCAGTTAAGGCGGCGGCACCCAAGGCA
GCACCGA back to topprotein sequence of jgi.p|Trimin1|348853 >Trimin1|348853|estExt_Genemark1.C_Ctg_320056 ID=Trimin1|348853|estExt_Genemark1.C_Ctg_320056|Name=jgi.p|Trimin1|348853|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp
MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLI
KTEELKLLSTASRLGLLSKLERAGLTLRDLEAALPFLDDIDAIALGKELS
PDLLAIAPKALEAAPALLPLAAAALDIPPSALLTGAALSVVAGLAAIAAI
PDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAG
KAGIVEGLKGKAAAAVAAPKAAVKAAAPKAAP back to topmRNA from alignment at Contig_32:451406..455680- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5210 ID=mRNA_5210|Name=jgi.p|Trimin1|348853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4275bp|location=Sequence derived from alignment at Contig_32:451406..455680- (Tribonema minus UTEX_B_3156 )
CCCGCACACCATGGTCAAGGCAATCGCCGCTGCCGCTGCCATCGCTGCGT
GCGCGACCTCGGCGGATGCATTCGCAGTCCCAGGTGCGCCCCACAGAGAG
AGGGACAAGTATGAGCGAGACATCATCCGCAAATAGCACAAGCAATCGTA
CGTCATGCAAGGCGCCGACCGCCATGATGCATCAGAGCTGTCAGCGGGAC
GCCTGGGCGATTGAATCTACGCATTGCATCATTTGCGCTCTGCGCATTGC
GCTGCGGTGCTGCGTTGCTGTCGAAAACATGACACGCAGGGTGTACATGT
GCCGCGCACCAAGTGCGTCGTTACTGCTGCCTTTCTGCGTTGCATATACG
ACAGCGTGCACGCTGTCGCCACGGCAAGGCCGAGACTCCAATGCACTGAC
CTCACCTTCTCAAGGCCTGCTCCAATTTGCTGATTGCTTCAGGCTCCGTG
CGGCCTGCTGTGGCGCGGAGGGGCATGACCATGGCGGTGAGCAAAGGGAG
CGTGCAGGAGCTGCTGATTAAGACTGAGGAGCTGAAGCTGCTTTCCACGG
TAAGCGCTTCACAGGTCATACGCTTTGCAGCACAGTGGTGTGCTGAAGCT
GCGCTGATGTCCCTGGATCAACGCCGATTCGTGTGTGACCGAATGGCCCC
CCCATTCATCGCGCGCATCCCAAGCGTTGCTGTTGGCAGCCGCGTCCACG
ATTCACCAGATTTAACAGCAATTCTCGCTGCGTCGAGACGCTGTCAAAGC
TCACTAGGCAGGCGTTAATGTCATAGCTTGTCCATCGACACGTTATTCAG
CACGAGGTAAACATCGCCTTACGCATCATGGTCTTACTGCTTGCACCTGC
TACCTTCCTATATCAGCAGAGGTTGTCACCTTCCTTGTGTGGTCATCTTA
TTATTACACCAATTACCTCTGGTTCTGCAATTGCTGCCAGCCCCTGCCAT
TATCTTCTTTCGCGACGTTCTTTTTGCACACTCCGTGGCTCAATTTGATG
AAGGCTGCAGTAACGGCCATCCGAACATCACGAACACCTGGTAACTCTGC
TACTTCTAGCAAGCGTTTCTAGGGTTGGTGATGTAGTTTCGAAGACCAGG
TGTCCGTAGTCTGGACGCACTATGTTGGTATAAGGAGAGCCATGGCATTT
TCATCCTTGACACAAGCGCCTTGTATGGCGCTATACAGTAAGCGAATGAG
GCATCAGTGCTACCAAACCAGCCGATGACGGCACCTTGTGGAAGTTCCAT
TGTCGCCCTTTTTCTTATCCAAGCCTCATCCGCCTGGACTGACATTGACA
GCGAATCTTGCACGGGCATGCCTCGCATTGGGCAGTGGGCGCGCTCGTGC
AAAGCTGCATTCAGATTTCAACCAAGTCCACATGTTGTTGACGTTTTTTC
AAAGTGGTAGTTTAATTAAACCAGCAACGCTCAGTGTGAGACCTATGTTA
TCATCTGAACCTCACAAGGCCACGTGATGGCATCCATTCCAGGACACAGT
GTTCATGCAATTGTTGTAACAGCTCCTGGCGGACTGCGCAAACTTTGTGA
CATAAGTGGTACTGCACTTCATGGAATGCAATATCTGTAGAGTGCCCTTC
TAGCAGTAGCTGTGTATGCAACACATATGATCATACATGACCACGCTGCG
TGGCCCGCTACATCCGTGAAGCGAGAACTGCAACGTGCATTGACTATAGC
ATGGTTATGCTGACCTTACGGATTGTGCCTAATAGGCTCCAGATCGCTTC
TCTGCAACCTGAGCAATGCGCTGGCGATGCATTGGTGGCTCGCTGCTCAA
TGCGGTGCAGTGTCTAATGAGTCCTGGTGCGCACAAGCAACTTCACGTCT
GTGAAGTGAGGTTCAGTTATCGGACTTCAACTCACAATGAATTTTCTTTC
AAAAACACCGATCAGGTGTCGTGCAGCGTTGTGCGCTTCACACACGGCGG
CCTCAGGCAGCATGCAACTGCACTTGTGATCACTGGAAGCTCCGAGATGT
ATAGGACGCCGCGGTGCGTGGGCTAGCGTCATGTCAGCCACAGTTGTCAC
CACCTCGCGGGATAAGATTGAGGCAGCGTCAAGCACGCCGTGATGCACGT
ACGGAGCTCAGCATGAGATGGGGTCAGGAAAGGCGCGATTCATGCACAAT
TTGAAGGGCATGACCTCTTGGCTGTCATGCACAGTCTTGCAGACGCATTC
AATGGGGTCACTGTGCGAAGCCTCCGCTGCGTGCGCACCGCGCTGCTGCA
CATGCTCGATAGCTGCGGCCCGCACGCACACGTAGCCTCAGCACTCCCGC
TGGAACAATGGCTGCAGCAGCCGTGGACTGTCCCGTTCAGAAGTATCATT
GCGAGCACTTCTCACGCACCGCTGCTGAGGCGTGCTGGTGGCCGCGCAGC
ACGCCTCAACTGCGTGACCGCCTTTGCCCGCCCTCCGAATGAGCATTGCC
ATATTAGAGCGCTGCTGAAGCACGCTGCTCGCGCCACCACATTGCTTGCG
CCTGCGCTGCTGCCTCCGCGGCTTGCACCGCATGCCGCCGCTGCTGCCGC
CGCCAGCTGCGCTTGGCGCCCCTGCGCTATGTAAATCCTTGGGTTTCCCC
AACTTAGCCGCTCTTGTAAGGTGGTACTGGCGCCCTCATTGCCTGCGTGG
CGGTGTGCTGAATCACTGCGTGTCGGCAATTACGGCAGTTACACGTCTCC
CTGTGCTGAGCTGCTCGCGGGGCAGGCAGTTGTACCTGGGGGTTTGGGGG
GGGGGGAGGGGACAGGGCATACATATGTCCTTCTCTTCTGTGTCCTCCTT
CACCTGCATCATGTTTCCAACCTCACACAACCTCACTTGCCAAAATAAAT
CATTCTACTCAACACCAGTCTCCCCCCCCCCCCCCCTTGCCACCATAAAA
AATTATAAAATTATACAGCTCACCACCAATCCCCCCCCACCACCCCCCTC
TCGCCACCCCCAGGCATCGCGCCTCGGCCTCCTCTCCAAGCTCGAGCGCG
CGGGCCTCACGCTGCGCGACCTCGAGGCCGCGCTCCCCTTCCTGGACGAC
ATCGACGCCATCGCGCTCGGCAAAGAGCTCTCGCCCGACCTCCTCGCGAT
CGCGCCCAAGGCCCTCGAGGCGGCCCCCGCGCTGCTCCCCCTCGCCGCGG
CAGCGCTCGACATACCCCCCAGCGCGCTGCTCACCGGCGCCGCGCTGAGC
GTTGTGGCGGGGCTCGCCGCGATCGCCGCGATACCGGACGACTCGATCGG
CGCCATCGCGCTGCAGGCGTTCCTCGCGGTGCCGCTGCTGGTGCTCGCGC
CCGGCGCCGCGGTGGTCGGCGCGGGCGTGCTGACCAAGGCCAACGACGGC
ACGCTCGTGCCGTTCGCCAAGGAGATTGCGGGCAAGGCGGGCATCGTCGA
GGGCCTCAAGGGCAAGGGTGCGTGCCTGGGGATCGGTCTGTGATGTTCAT
GTTGATGTTGAAGTTACAGTAGGATCAGTGCTTGATTTGACATGGAGGTT
GCGGGCAAGGCGGGCATCGCCGAGGGCCTCAAGGACAAGGTGCGTGCTGG
GGGTTGTAATGTTGAAGTTAAAGTCACAGTGTAGGTTGTGCCTGTTTGGA
CAAGGATATTGCGGGGAAGGCGGGCATCGCCGAGGGCCTCAAGGACAAGG
GTGCGTGCCTGGGGATCGGTCTGTGGTGTTCATGTTGAGGTTGAAGTTAC
AGTCGGTTGGTGCTCGTTTCGACAAGGAGATGGCGGGCAGGGCAGGCATC
GAGGGCCTCAAAGGCAAGGGTGCATGTGTGATGCTGCATCTCTCACGCTG
TGTGCTGTGCGTCGGTGTGCGAGAGACCTGCGCGTTGTGGTTGTGAAGTT
GAAATCGAAGTTGCATACGTTCTGTCGCATACGTTCGGTCGTTGTTGTGA
TGTTGAAGTTGAAGTAAATTAGGTTTGCCAAGAAGATCGCGGGCAAGGCG
GACATCGGTGACGGCCTCAAGGGCAAGGGTGCACAACAGAAACATCCCCT
TCCTGTGCGGGCCGCCTTTTGTGTGCTGAGGAAGTTGATGTTGAAGTTCA
TGGGTTGCGGCGGTTAGTCGTGGCCGTGGTGAGCAAGGTTTCACTGATTT
CCGCTTACATTGCAGTACATGCTGAGCAGCTGCAGCCAGCCGCACTCTGA
GCACTGATGACAGATTGCCGCCTCTCTCTTCGCCCCCCCCCCCCCCCTCT
CTGTCTTAACAGCGGCTGCGGCTGTGGCTGCCCCCAAGGCTGCAGTTAAG
GCGGCGGCACCCAAGGCAGCACCGA back to topCoding sequence (CDS) from alignment at Contig_32:451406..455680- >mRNA_5210 ID=mRNA_5210|Name=jgi.p|Trimin1|348853|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=696bp|location=Sequence derived from alignment at Contig_32:451406..455680- (Tribonema minus UTEX_B_3156 )
ATGGTCAAGGCAATCGCCGCTGCCGCTGCCATCGCTGCGTGCGCGACCTC
GGCGGATGCATTCGCAGTCCCAGGCTCCGTGCGGCCTGCTGTGGCGCGGA
GGGGCATGACCATGGCGGTGAGCAAAGGGAGCGTGCAGGAGCTGCTGATT
AAGACTGAGGAGCTGAAGCTGCTTTCCACGGCATCGCGCCTCGGCCTCCT
CTCCAAGCTCGAGCGCGCGGGCCTCACGCTGCGCGACCTCGAGGCCGCGC
TCCCCTTCCTGGACGACATCGACGCCATCGCGCTCGGCAAAGAGCTCTCG
CCCGACCTCCTCGCGATCGCGCCCAAGGCCCTCGAGGCGGCCCCCGCGCT
GCTCCCCCTCGCCGCGGCAGCGCTCGACATACCCCCCAGCGCGCTGCTCA
CCGGCGCCGCGCTGAGCGTTGTGGCGGGGCTCGCCGCGATCGCCGCGATA
CCGGACGACTCGATCGGCGCCATCGCGCTGCAGGCGTTCCTCGCGGTGCC
GCTGCTGGTGCTCGCGCCCGGCGCCGCGGTGGTCGGCGCGGGCGTGCTGA
CCAAGGCCAACGACGGCACGCTCGTGCCGTTCGCCAAGGAGATTGCGGGC
AAGGCGGGCATCGTCGAGGGCCTCAAGGGCAAGGCGGCTGCGGCTGTGGC
TGCCCCCAAGGCTGCAGTTAAGGCGGCGGCACCCAAGGCAGCACCG back to top
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