Trimin1|348853|estExt_Genemark1.C_Ctg_320056 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348853
Unique NameTrimin1|348853|estExt_Genemark1.C_Ctg_320056
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length232
Homology
BLAST of jgi.p|Trimin1|348853 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA)

HSP 1 Score: 312 bits (800), Expect = 2.560e-105
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAGKAGIVEGLKGKAAAAVAAPKXXXXXXXXXAAP 232
            MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAGKAGIVEGLKGKAAAAVAAPKXXXXXXXXXAAP
Sbjct:    1 MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAGKAGIVEGLKGKAAAAVAAPKXXXXXXXXXAAP 232          
BLAST of jgi.p|Trimin1|348853 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.110e-13
Identity = 96/198 (48.48%), Postives = 122/198 (61.62%), Query Frame = 0
Query:    3 KAIAAAAAIAACATSADAFAVPGSVRPA---VARRGMTMAVSKGS---VQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPF 194
            K +A A A+AACA  ADAF   GS+RPA   + R G + +V   +   V +LL +TE+LKLL    XXXXXXXXXXXX TL+D+E  LP +D+ D I L K + PDLL +AP     XXXXXXXXXXXXXXXXX            G A +  +PDDS+ +IA++ F+A PLL + P    V    LT   +G+LV F
Sbjct:    2 KTVAFACAVAACAGGADAFV--GSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDF 197          
BLAST of jgi.p|Trimin1|348853 vs. uniprot
Match: A0A6U1PC24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PC24_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.290e-13
Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 0
Query:   40 VSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTK 185
            V + ++ E LIK E LKLL+  S            ++L  LE  L   D+   +   ++ S     + PKA++                   LL GAA S  AG  AI AIPDDSI  +ALQ+F+A+PL+ + PGAAVVG+ VL+K
Sbjct:   49 VEEEAIAETLIKAENLKLLTRVSKLGLLSKAEKFGISLSKLEPFLKLADESGVLLELEKSSAKTFPLLPKAVDQAPALLSLAESALALNPSVLLAGAAASAAAGAYAIYAIPDDSITNMALQSFIAIPLIAVIPGAAVVGSTVLSK 194          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348853 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z532_9STRA2.560e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G0T4_ECTSI1.110e-1348.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U1PC24_9STRA5.290e-1336.99Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009500Protein of unknown function DUF1118PFAMPF06549DUF1118coord: 117..185
e-value: 1.1E-4
score: 22.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:451407..455670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348853mRNA_5210Tribonema minus UTEX_B_3156 mRNAContig_32 451406..455680 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348853|estExt_Genemark1.C_Ctg_320056 ID=Trimin1|348853|estExt_Genemark1.C_Ctg_320056|Name=jgi.p|Trimin1|348853|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp
MVKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSKGSVQELLI
KTEELKLLSTASRLGLLSKLERAGLTLRDLEAALPFLDDIDAIALGKELS
PDLLAIAPKALEAAPALLPLAAAALDIPPSALLTGAALSVVAGLAAIAAI
PDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLVPFAKEIAG
KAGIVEGLKGKAAAAVAAPKAAVKAAAPKAAP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009500DUF1118