mRNA_5156 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152047
Unique NamemRNA_5156
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A836CDE2_9STRA (GRAM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.310e-50
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR
Sbjct:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 77          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: F0Y4G3_AURAN (GRAM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G3_AURAN)

HSP 1 Score: 111 bits (278), Expect = 1.370e-30
Identity = 45/77 (58.44%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            +DFSCA++ ++L+HGRLY+T   + FYSN+FGFEK I+IP++H+  + +  TA+FIPNAIA+ T+R+ YVFRSFWDR
Sbjct:    1 RDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSHITCITKEYTAVFIPNAIAVITARKEYVFRSFWDR 77          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.270e-30
Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            +DFSCAV+SR+L+HGR+Y+T   + FYSN+FGFEKII+IPF H+R + +  TALFIPNAIAI TS++ Y+FRSFWDR
Sbjct:   35 EDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPFCHMRCITKEKTALFIPNAIAIITSKKEYIFRSFWDR 111          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.340e-30
Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            +DFSCAV+SR+L+HGR+Y+T   + FYSN+FGFEKII+IPF H+R + +  TALFIPNAIAI TS++ Y+FRSFWDR
Sbjct:   74 EDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPFCHMRCITKEKTALFIPNAIAIITSKKEYIFRSFWDR 150          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.260e-28
Identity = 47/77 (61.04%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            +DFSCA++ ++L+HGRLY+T   + FYSN+FGFEK I+IP++HV  V + +TA+FIPNAIA+ T+R+ YVFRSFWDR
Sbjct:   62 RDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSHVTCVTKENTAVFIPNAIAVITARKEYVFRSFWDR 138          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.180e-26
Identity = 45/77 (58.44%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            +DFSCAV+ ++L+HGR+Y+T   + FYSN+FGFEK I+IP++H+  V +  TA+FIPNAIA+ T++R Y FRSFWDR
Sbjct:   43 KDFSCAVERKILLHGRMYVTDKFICFYSNLFGFEKKIKIPYSHIACVTKEYTAVFIPNAIAVITAKREYFFRSFWDR 119          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A7S3NLX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLX8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.910e-26
Identity = 43/77 (55.84%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            +DFSCA++ ++L+HGRLY+T   + FYSN+FGFEK I+IP++++  + +  TA+FIPNAIA+ T+R+ Y+FRSFWDR
Sbjct:  166 RDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSYITCITKEYTAVFIPNAIAVITARKEYIFRSFWDR 242          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: W7TDU9_9STRA (Gram domain-containing protein 1a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDU9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.100e-23
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            D SCAV+S++L+HGR+YIT   + FYSN FGFEK I+IPF+ VR +++ +TAL IPN I I T  + Y FRSFWDR
Sbjct:  119 DASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDR 194          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A482S830_9ARCH (GRAM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S830_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 1.810e-21
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    4 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITT 192
            DFSCAV+S VL+HGR+YI+   + FYSN+FG EK IRIP++H++ + + +TA+ IPNAIAI+T
Sbjct:    6 DFSCAVESTVLLHGRMYISTRFICFYSNLFGLEKKIRIPYSHIKNITKENTAMVIPNAIAIST 68          
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A7S1U683_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U683_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.610e-19
Identity = 32/76 (42.11%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    4 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
            DFSC+V+S++ +HG +Y+T   + FYSN FG+EK I +P+  +  +++ S ++F+   + I+T+++ YVFR+FWDR
Sbjct:   43 DFSCSVESKMTLHGHMYVTTRFICFYSNFFGYEKKILLPYKTINCISKTSDSVFLSPGVEISTAKQGYVFRNFWDR 118          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDE2_9STRA3.310e-50100.00GRAM domain-containing protein (Fragment) n=1 Tax=... [more]
F0Y4G3_AURAN1.370e-3058.44GRAM domain-containing protein (Fragment) n=1 Tax=... [more]
D7FKF6_ECTSI5.270e-3066.23VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Q2_9PHAE5.340e-3066.23VASt domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8J2ST97_9STRA6.260e-2861.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2STC3_9STRA2.180e-2658.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3NLX8_9STRA5.910e-2655.84Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W7TDU9_9STRA1.100e-2359.21Gram domain-containing protein 1a n=1 Tax=Nannochl... [more]
A0A482S830_9ARCH1.810e-2158.73GRAM domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S1U683_9STRA1.610e-1942.11Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:22709..23688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152047|gw1.32.181.1
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
Preferred nameVAD1
Descriptionintracellular sterol transport
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1032@1|root,KOG1032@2759|Eukaryota
Evalue8.64e-31
Seed ortholog2880.D7FKF6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGRAM domain
Ec32 orthologEc-12_002240.1
TranscriptId152369
TrackFilteredModels1
ProteinId152047
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152047gene_5156Tribonema minus UTEX_B_3156 geneContig_32 22709..23688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152047Trimin1|152047|gw1.32.181.1Tribonema minus UTEX_B_3156 polypeptideContig_32 22709..23688 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5156_2exon_5156_2Tribonema minus UTEX_B_3156 exonContig_32 22709..22834 -
exon_5156_1exon_5156_1Tribonema minus UTEX_B_3156 exonContig_32 23584..23688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5156CDS_5156Tribonema minus UTEX_B_3156 CDSContig_32 23584..23688 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5156 ID=mRNA_5156|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_32:22709..23688- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGACTTCAGCTGCGCAGTGCAGAGCCGCGTACTCATGCACGGCCGCCT
GTACATCACGCCCGGGCACCTGCTGTTCTACAGCAACATCTTTGGCTTTG
AGAAGATCATCCGCATCCCCTTCACGCACGTGCGCGGCGTCGCGCGCGCG
TCCACGGCGCTGTTCATCCCCAACGCCATCGCCATCACCACCAGCCGGCG
CGCGTACGTCTTCCGCAGCTTCTGGGACAGG
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protein sequence of jgi.p|Trimin1|152047

>Trimin1|152047|gw1.32.181.1 ID=Trimin1|152047|gw1.32.181.1|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARA
STALFIPNAIAITTSRRAYVFRSFWDR
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mRNA from alignment at Contig_32:22709..23688-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5156 ID=mRNA_5156|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=980bp|location=Sequence derived from alignment at Contig_32:22709..23688- (Tribonema minus UTEX_B_3156 )
CAGGACTTCAGCTGCGCAGTGCAGAGCCGCGTACTCATGCACGGCCGCCT GTACATCACGCCCGGGCACCTGCTGTTCTACAGCAACATCTTTGGCTTTG AGAAGGTGCGCTGCCGCTGCCACCGCGCTGCTGCCGCGGCGCTGCTGCTG CCGCGGCCGCCGCTGCTGCTATCGCTGCTGCTGCTGTCAATGCCGGCTAC GCTACCGCCACCGTTGGCGGCGGTCATCCAACGGTGCCAATAACCGGCGC CCGCGCGAAAATTTGTTTTTGTTCCAGAGTGTAGCGCATAGTGATTGCGG CGACCAAGGACTTGTGTTCGGCCAATTGAATGGTGTTGTTCTCGTCGGCG GGCAGAGCGCTGGAAGAACGGTCGGGATTTCTGGAAATTGTGCCGCCTCC CGCATTAGTGTGTAGCCACCGAGCTGGCATTGCCCTGCTGCGCTTGCCGC TGGCACCGCGCAGTTCAGTCCATCGAGTACCGCGCCGCCCATCGCTCATT GCGCTGCGCTGGCCGCAGACAGGTCCCGTCATGCAGTGCTAGGGTTAGGG ATAGGGTTAGAATTAGGGTTAGGGTTCAGGTTGTATGGGCGTTTCCGTTC CACGAGCGGATGTGCGCCCCTCTTTCGCAAAACACGCCTGCCCGCGCTGC GCGTTGCCACCGATGGAGTCCCGAGTCTTTGACCGTGAGCACGAGTGCCG GGTTCAATTCTTGACGCGTGTGGTGACCGTTGTAACTCGCGACGCATCCC GTGCGCAGATCATACAGAGTTTTGAGCACAATGTAACGGGTTCAATTCCT GACGCGCACGCGCTGATTACTTTTTTTTTTTCTTGCGGCGCATTTTCTCC GCAGATCATCCGCATCCCCTTCACGCACGTGCGCGGCGTCGCGCGCGCGT CCACGGCGCTGTTCATCCCCAACGCCATCGCCATCACCACCAGCCGGCGC GCGTACGTCTTCCGCAGCTTCTGGGACAGG
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Coding sequence (CDS) from alignment at Contig_32:22709..23688-

>mRNA_5156 ID=mRNA_5156|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_32:22709..23688- (Tribonema minus UTEX_B_3156 )
CAGGACTTCAGCTGCGCAGTGCAGAGCCGCGTACTCATGCACGGCCGCCT
GTACATCACGCCCGGGCACCTGCTGTTCTACAGCAACATCTTTGGCTTTG
AGAAGATCATCCGCATCCCCTTCACGCACGTGCGCGGCGTCGCGCGCGCG
TCCACGGCGCTGTTCATCCCCAACGCCATCGCCATCACCACCAGCCGGCG
CGCGTACGTCTTCCGCAGCTTCTGGGACAGG
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