mRNA_5111 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A836CLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV6_9STRA) HSP 1 Score: 373 bits (958), Expect = 7.770e-131 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 Query: 1 MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 561 MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV Sbjct: 1 MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 187
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A836CJ77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ77_9STRA) HSP 1 Score: 280 bits (716), Expect = 2.050e-94 Identity = 132/153 (86.27%), Postives = 141/153 (92.16%), Query Frame = 1 Query: 103 ERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 561 ERFS+ P GTPVVDQGGFG VPWG+AS FEDKTAKWIWTSPNARFSA VG+Y+FAAQ KIMS TPVTA LHILVDNDAD++LNG KVGSASLGFSA+DY+RIP+TLVWGVNDIVL CTNTGVGPAGVCASLIDD SKTPLL TEGSRWVYNKV Sbjct: 3 ERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKV 155
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A835Z862_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z862_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.100e-48 Identity = 71/139 (51.08%), Postives = 98/139 (70.50%), Query Frame = 1 Query: 139 VDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 555 V QGGFG VPWG ASQF D TA W+WT NARFSAP G+ +F+ + S A++H+LVDNDAD++LN KVGS S+GFS R+Y++IP+ L WG + + RC N+G GPAG+ +++D S ++K++ S WV+N Sbjct: 2 VSQGGFGVVPWGGASQFIDPTATWLWTQTNARFSAPAGTVDFSTLITNSSQQDKQALIHMLVDNDADVFLNDAKVGSGSMGFSVREYAKIPIALPWGTSTLRFRCVNSGTGPAGLLVAVVDAASGVTIVKSDPSSWVFN 140
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A835ZCJ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ5_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.870e-44 Identity = 68/139 (48.92%), Postives = 100/139 (71.94%), Query Frame = 1 Query: 139 VDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 555 V+QGG+G +PWG A++F + +A W+WT NARFSAP + +F+ + S A++HILVDNDA IYLN KVGSAS+GFS +DY+++P+++ WG + + +R NTG GPAG+ +++D S T L+KT+ S WV+N Sbjct: 2 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 140
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A4V1IRM8_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IRM8_9FUNG) HSP 1 Score: 121 bits (304), Expect = 4.070e-29 Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1 Query: 148 GGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGS 540 G FG PWGSASQF D TA WIW+ P A +AP G+ FA Q S + A+LHIL DN+A + LNG VG+A+ G++ Y+++PL+L G N I + TN G GPAG+CA+LI V+K+ LL T+ + Sbjct: 48 GIFGVSPWGSASQFYDPTAYWIWSVPTAATAAPAGTVTFANQYYNSSNFTIPAVLHILADNNAVVVLNGVIVGTAAGGWTTPSYTQLPLSLTPGNNSISIVATNAG-GPAGLCAALISGVNKSVLLHTDNT 177
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A4P9WNY3_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WNY3_9FUNG) HSP 1 Score: 117 bits (292), Expect = 2.090e-28 Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1 Query: 127 GTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTE 534 GT + G FG PWGSASQF D TA WIW + A +AP GS F Q S + A+LHIL D+ A +++NG VG A G+S Y++IP+ L G N I + TN GPAG+CASLI V+ + LL T+ Sbjct: 173 GTNTFNLGLFGISPWGSASQFADPTASWIWYTSTAAATAPSGSVTFVNQYYNSSYNTMPAILHILADDSATVFVNGANVGVAVAGWSTTSYTKIPVNLTPGANLISIVDTNAS-GPAGLCASLISSVTNSVLLHTD 307
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: D8TKU9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TKU9_VOLCA) HSP 1 Score: 79.3 bits (194), Expect = 3.780e-15 Identity = 65/180 (36.11%), Postives = 88/180 (48.89%), Query Frame = 1 Query: 43 SATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAP--VGSYNFAAQLKIMSVTPVTA-----MLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLT--LVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 555 SA L V VT PS A L P Q +GT G A F D +AKWIW N S S A L I ++T TA +LHI+ D+DA+IY+NG + S + G+++ Y+ P+T LV G N + + N+G GPA + ASL +T L +T+ S W N Sbjct: 8 SAALLLVLVTSMPPSSTA-LNAIELAPAA-----QSIYGTDNIGVAKPFFDLSAKWIWYHTNGAGSGSNRTSSGQSIAPLFIKTITVSTAGGTQALLHIIPDDDANIYVNGFFIQSVNAGWTSGTYTNRPITINLVQGTNVLAISIRNSGGGPAALLASLTSMDGRTVLARTDKS-WEVN 180
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A8J4CWM7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CWM7_9CHLO) HSP 1 Score: 74.7 bits (182), Expect = 3.020e-13 Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 1 Query: 139 VDQGGFGTVPWGSAS-----QFEDKTAKWIWTSPNA-RFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIP-----LTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVY 552 V+ G G PWGS++ F D AKWIW PNA + ++ + + F+ + + + +L ++VD+ AD+Y+NG V S G++ Y P LTL G N I +R TN+ AG+ AS+ T L +T S W+Y Sbjct: 38 VELGPAGMAPWGSSNIGPMQLFTDTQAKWIWAEPNADKGTSAITTATFSITI-VSACQETQVVLRLIVDDLADVYVNGALVVSMKWGWNNNTYPGTPGQPVTLTLARGTNTISVRATNSFGEAAGLLASISSKDDGTVLTRTS-SAWMY 184
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A8J4CTG4_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CTG4_9CHLO) HSP 1 Score: 72.4 bits (176), Expect = 6.390e-13 Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 1 Query: 163 VPWGSAS-----QFEDKTAKWIWTSPNARFSAP-VGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSR-----IPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTE-GSRWVY 552 PWGS+ F D AKWIW PNA P + + F L I++ P+ L ++VD+ AD+Y+NG V S G+ S + LTL GVN I +R +N+ GPAG+ AS +S P++ T S W + Sbjct: 2 APWGSSKIGQGLPFTDTQAKWIWAVPNADKDTPTITTATFTTTL-IVTNLPIQVALRMIVDDVADVYVNGALVLSTKWGWDDTHPSSTATWPVTLTLPQGVNTISVRASNSLGGPAGLLAS----ISTGPIVLTRTSSAWTW 138
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A8J4BHW6_9CHLO (Uncharacterized protein n=5 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BHW6_9CHLO) HSP 1 Score: 72.8 bits (177), Expect = 1.460e-12 Identity = 50/139 (35.97%), Postives = 68/139 (48.92%), Query Frame = 1 Query: 154 FGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTP--VTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIP--LTLVWGVNDIVLRCTNTGV--GPAGVCASLIDDVSKTPLLKTEGSRWVY 552 +G GS F+D AKWIW + S+ SY L + V P +A+L ++VD+ ADI LNG V + G+ A Y+ P L L G+N I + TN GPAG+ ASL T +T S W+Y Sbjct: 60 WGAANIGSGKPFKDTQAKWIWVHSGSDVSS---SYFVKPVLSTIFVVPQDTSALLSLIVDDHADIILNGLYVSALDGGYLAGQYTNRPVLLNLKRGINTISVLVTNYNSPGGPAGLLASLSSSDGSTVYSRTSSSAWIY 195 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5111 ID=mRNA_5111|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=564bp|location=Sequence derived from alignment at Contig_117:357085..357648+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTCAAGCCGAAGGTGGCCAGCAGCAATGCGGCTTCACGCAGCGCTACback to top protein sequence of jgi.p|Trimin1|174697 >Trimin1|174697|e_gw1.117.38.1 ID=Trimin1|174697|e_gw1.117.38.1|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=188bp MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGback to top mRNA from alignment at Contig_117:357085..357648+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5111 ID=mRNA_5111|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=564bp|location=Sequence derived from alignment at Contig_117:357085..357648+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_117:357085..357648+ >mRNA_5111 ID=mRNA_5111|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=564bp|location=Sequence derived from alignment at Contig_117:357085..357648+ (Tribonema minus UTEX_B_3156 )back to top |