mRNA_5111 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174697
Unique NamemRNA_5111
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A836CLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV6_9STRA)

HSP 1 Score: 373 bits (958), Expect = 7.770e-131
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
Query:    1 MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 561
            MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV
Sbjct:    1 MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 187          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A836CJ77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ77_9STRA)

HSP 1 Score: 280 bits (716), Expect = 2.050e-94
Identity = 132/153 (86.27%), Postives = 141/153 (92.16%), Query Frame = 1
Query:  103 ERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 561
            ERFS+ P GTPVVDQGGFG VPWG+AS FEDKTAKWIWTSPNARFSA VG+Y+FAAQ KIMS TPVTA LHILVDNDAD++LNG KVGSASLGFSA+DY+RIP+TLVWGVNDIVL CTNTGVGPAGVCASLIDD SKTPLL TEGSRWVYNKV
Sbjct:    3 ERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKV 155          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A835Z862_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z862_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.100e-48
Identity = 71/139 (51.08%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  139 VDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 555
            V QGGFG VPWG ASQF D TA W+WT  NARFSAP G+ +F+  +   S     A++H+LVDNDAD++LN  KVGS S+GFS R+Y++IP+ L WG + +  RC N+G GPAG+  +++D  S   ++K++ S WV+N
Sbjct:    2 VSQGGFGVVPWGGASQFIDPTATWLWTQTNARFSAPAGTVDFSTLITNSSQQDKQALIHMLVDNDADVFLNDAKVGSGSMGFSVREYAKIPIALPWGTSTLRFRCVNSGTGPAGLLVAVVDAASGVTIVKSDPSSWVFN 140          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A835ZCJ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.870e-44
Identity = 68/139 (48.92%), Postives = 100/139 (71.94%), Query Frame = 1
Query:  139 VDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 555
            V+QGG+G +PWG A++F + +A W+WT  NARFSAP  + +F+  +   S     A++HILVDNDA IYLN  KVGSAS+GFS +DY+++P+++ WG + + +R  NTG GPAG+  +++D  S T L+KT+ S WV+N
Sbjct:    2 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 140          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A4V1IRM8_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IRM8_9FUNG)

HSP 1 Score: 121 bits (304), Expect = 4.070e-29
Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  148 GGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGS 540
            G FG  PWGSASQF D TA WIW+ P A  +AP G+  FA Q    S   + A+LHIL DN+A + LNG  VG+A+ G++   Y+++PL+L  G N I +  TN G GPAG+CA+LI  V+K+ LL T+ +
Sbjct:   48 GIFGVSPWGSASQFYDPTAYWIWSVPTAATAAPAGTVTFANQYYNSSNFTIPAVLHILADNNAVVVLNGVIVGTAAGGWTTPSYTQLPLSLTPGNNSISIVATNAG-GPAGLCAALISGVNKSVLLHTDNT 177          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A4P9WNY3_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WNY3_9FUNG)

HSP 1 Score: 117 bits (292), Expect = 2.090e-28
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1
Query:  127 GTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTE 534
            GT   + G FG  PWGSASQF D TA WIW +  A  +AP GS  F  Q    S   + A+LHIL D+ A +++NG  VG A  G+S   Y++IP+ L  G N I +  TN   GPAG+CASLI  V+ + LL T+
Sbjct:  173 GTNTFNLGLFGISPWGSASQFADPTASWIWYTSTAAATAPSGSVTFVNQYYNSSYNTMPAILHILADDSATVFVNGANVGVAVAGWSTTSYTKIPVNLTPGANLISIVDTNAS-GPAGLCASLISSVTNSVLLHTD 307          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: D8TKU9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TKU9_VOLCA)

HSP 1 Score: 79.3 bits (194), Expect = 3.780e-15
Identity = 65/180 (36.11%), Postives = 88/180 (48.89%), Query Frame = 1
Query:   43 SATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAP--VGSYNFAAQLKIMSVTPVTA-----MLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLT--LVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 555
            SA L  V VT   PS  A L      P       Q  +GT   G A  F D +AKWIW   N   S      S    A L I ++T  TA     +LHI+ D+DA+IY+NG  + S + G+++  Y+  P+T  LV G N + +   N+G GPA + ASL     +T L +T+ S W  N
Sbjct:    8 SAALLLVLVTSMPPSSTA-LNAIELAPAA-----QSIYGTDNIGVAKPFFDLSAKWIWYHTNGAGSGSNRTSSGQSIAPLFIKTITVSTAGGTQALLHIIPDDDANIYVNGFFIQSVNAGWTSGTYTNRPITINLVQGTNVLAISIRNSGGGPAALLASLTSMDGRTVLARTDKS-WEVN 180          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A8J4CWM7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CWM7_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 3.020e-13
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  139 VDQGGFGTVPWGSAS-----QFEDKTAKWIWTSPNA-RFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIP-----LTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVY 552
            V+ G  G  PWGS++      F D  AKWIW  PNA + ++ + +  F+  + + +      +L ++VD+ AD+Y+NG  V S   G++   Y   P     LTL  G N I +R TN+    AG+ AS+      T L +T  S W+Y
Sbjct:   38 VELGPAGMAPWGSSNIGPMQLFTDTQAKWIWAEPNADKGTSAITTATFSITI-VSACQETQVVLRLIVDDLADVYVNGALVVSMKWGWNNNTYPGTPGQPVTLTLARGTNTISVRATNSFGEAAGLLASISSKDDGTVLTRTS-SAWMY 184          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A8J4CTG4_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CTG4_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 6.390e-13
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  163 VPWGSAS-----QFEDKTAKWIWTSPNARFSAP-VGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSR-----IPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTE-GSRWVY 552
             PWGS+       F D  AKWIW  PNA    P + +  F   L I++  P+   L ++VD+ AD+Y+NG  V S   G+     S      + LTL  GVN I +R +N+  GPAG+ AS    +S  P++ T   S W +
Sbjct:    2 APWGSSKIGQGLPFTDTQAKWIWAVPNADKDTPTITTATFTTTL-IVTNLPIQVALRMIVDDVADVYVNGALVLSTKWGWDDTHPSSTATWPVTLTLPQGVNTISVRASNSLGGPAGLLAS----ISTGPIVLTRTSSAWTW 138          
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Match: A0A8J4BHW6_9CHLO (Uncharacterized protein n=5 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BHW6_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.460e-12
Identity = 50/139 (35.97%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  154 FGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTP--VTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIP--LTLVWGVNDIVLRCTNTGV--GPAGVCASLIDDVSKTPLLKTEGSRWVY 552
            +G    GS   F+D  AKWIW    +  S+   SY     L  + V P   +A+L ++VD+ ADI LNG  V +   G+ A  Y+  P  L L  G+N I +  TN     GPAG+ ASL      T   +T  S W+Y
Sbjct:   60 WGAANIGSGKPFKDTQAKWIWVHSGSDVSS---SYFVKPVLSTIFVVPQDTSALLSLIVDDHADIILNGLYVSALDGGYLAGQYTNRPVLLNLKRGINTISVLVTNYNSPGGPAGLLASLSSSDGSTVYSRTSSSAWIY 195          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174697 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A836CLV6_9STRA7.770e-131100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJ77_9STRA2.050e-9486.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z862_9STRA1.100e-4851.08Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZCJ5_9STRA1.870e-4448.92Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4V1IRM8_9FUNG4.070e-2948.85Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A4P9WNY3_9FUNG2.090e-2846.32Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
D8TKU9_VOLCA3.780e-1536.11Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4CWM7_9CHLO3.020e-1333.56Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4CTG4_9CHLO6.390e-1335.92Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4BHW6_9CHLO1.460e-1235.97Uncharacterized protein n=5 Tax=Volvox africanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:357085..357648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174697|e_gw1.117.38.1
BRITEko00000,ko01000
KEGG koko:K05989
EC3.2.1.40
DescriptionAlpha-L-rhamnosidase N-terminal domain
COG categoryG
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG3250@1|root,COG3250@2|Bacteria,2I3FI@201174|Actinobacteria,2NH4H@228398|Streptacidiphilus
Evalue2.01e-06
Seed ortholog981369.JQMJ01000001_gene6849
Hectar predicted targeting categorymitochondrion
TranscriptId175019
TrackFilteredModels1
ProteinId174697
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174697gene_5111Tribonema minus UTEX_B_3156 geneContig_117 357085..357648 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5111_1exon_5111_1Tribonema minus UTEX_B_3156 exonContig_117 357085..357648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5111CDS_5111Tribonema minus UTEX_B_3156 CDSContig_117 357085..357648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174697Trimin1|174697|e_gw1.117.38.1Tribonema minus UTEX_B_3156 polypeptideContig_117 357085..357648 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5111 ID=mRNA_5111|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=564bp|location=Sequence derived from alignment at Contig_117:357085..357648+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGCCGAAGGTGGCCAGCAGCAATGCGGCTTCACGCAGCGCTAC
TCTGAAGAGCGTGACGGTCACAGAATTTGTACCATCAAAACCTGCTGTGC
TGGAGCGCTTCTCTGAGCAGCCCGTAGGTACGCCTGTGGTGGACCAAGGC
GGGTTCGGTACAGTCCCATGGGGCAGCGCCAGTCAGTTCGAAGACAAGAC
AGCAAAGTGGATATGGACATCGCCTAACGCCAGGTTCAGTGCCCCTGTCG
GATCGTACAATTTTGCAGCGCAGTTAAAGATAATGTCGGTCACACCCGTA
ACCGCGATGCTGCACATACTCGTAGATAACGACGCCGATATTTATTTGAA
CGGAGAGAAGGTCGGCAGCGCCTCGCTTGGTTTCTCGGCCCGAGACTACT
CGCGTATACCTCTCACGCTGGTCTGGGGCGTGAATGATATAGTTCTCAGG
TGCACGAACACCGGCGTCGGCCCAGCCGGTGTGTGCGCTTCTCTGATTGA
CGACGTGTCCAAGACGCCTCTGCTTAAGACTGAGGGTTCTCGCTGGGTAT
ACAATAAGGTCTAG
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protein sequence of jgi.p|Trimin1|174697

>Trimin1|174697|e_gw1.117.38.1 ID=Trimin1|174697|e_gw1.117.38.1|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=188bp
MFKPKVASSNAASRSATLKSVTVTEFVPSKPAVLERFSEQPVGTPVVDQG
GFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPV
TAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLR
CTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV*
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mRNA from alignment at Contig_117:357085..357648+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5111 ID=mRNA_5111|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=564bp|location=Sequence derived from alignment at Contig_117:357085..357648+ (Tribonema minus UTEX_B_3156 )
ATGTTCAAGCCGAAGGTGGCCAGCAGCAATGCGGCTTCACGCAGCGCTAC TCTGAAGAGCGTGACGGTCACAGAATTTGTACCATCAAAACCTGCTGTGC TGGAGCGCTTCTCTGAGCAGCCCGTAGGTACGCCTGTGGTGGACCAAGGC GGGTTCGGTACAGTCCCATGGGGCAGCGCCAGTCAGTTCGAAGACAAGAC AGCAAAGTGGATATGGACATCGCCTAACGCCAGGTTCAGTGCCCCTGTCG GATCGTACAATTTTGCAGCGCAGTTAAAGATAATGTCGGTCACACCCGTA ACCGCGATGCTGCACATACTCGTAGATAACGACGCCGATATTTATTTGAA CGGAGAGAAGGTCGGCAGCGCCTCGCTTGGTTTCTCGGCCCGAGACTACT CGCGTATACCTCTCACGCTGGTCTGGGGCGTGAATGATATAGTTCTCAGG TGCACGAACACCGGCGTCGGCCCAGCCGGTGTGTGCGCTTCTCTGATTGA CGACGTGTCCAAGACGCCTCTGCTTAAGACTGAGGGTTCTCGCTGGGTAT ACAATAAGGTCTAG
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Coding sequence (CDS) from alignment at Contig_117:357085..357648+

>mRNA_5111 ID=mRNA_5111|Name=jgi.p|Trimin1|174697|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=564bp|location=Sequence derived from alignment at Contig_117:357085..357648+ (Tribonema minus UTEX_B_3156 )
ATGTTCAAGCCGAAGGTGGCCAGCAGCAATGCGGCTTCACGCAGCGCTAC
TCTGAAGAGCGTGACGGTCACAGAATTTGTACCATCAAAACCTGCTGTGC
TGGAGCGCTTCTCTGAGCAGCCCGTAGGTACGCCTGTGGTGGACCAAGGC
GGGTTCGGTACAGTCCCATGGGGCAGCGCCAGTCAGTTCGAAGACAAGAC
AGCAAAGTGGATATGGACATCGCCTAACGCCAGGTTCAGTGCCCCTGTCG
GATCGTACAATTTTGCAGCGCAGTTAAAGATAATGTCGGTCACACCCGTA
ACCGCGATGCTGCACATACTCGTAGATAACGACGCCGATATTTATTTGAA
CGGAGAGAAGGTCGGCAGCGCCTCGCTTGGTTTCTCGGCCCGAGACTACT
CGCGTATACCTCTCACGCTGGTCTGGGGCGTGAATGATATAGTTCTCAGG
TGCACGAACACCGGCGTCGGCCCAGCCGGTGTGTGCGCTTCTCTGATTGA
CGACGTGTCCAAGACGCCTCTGCTTAAGACTGAGGGTTCTCGCTGGGTAT
ACAATAAGGTCTAG
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