mRNA_5095 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174778
Unique NamemRNA_5095
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A836CPX4_9STRA (Putative nuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPX4_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.880e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
Query:    1 MLLRKLSALVCGSHNGIDWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKTSFT 453
            MLLRKLSALVCGSHNGIDWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKTSFT
Sbjct:    1 MLLRKLSALVCGSHNGIDWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKTSFT 151          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A835YYA9_9STRA (Putative nuclease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA9_9STRA)

HSP 1 Score: 218 bits (554), Expect = 2.060e-70
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    1 MLLRKLSALVCGSHNGIDWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKT 444
            M LRKLS L+  +     W +VTYD+C+KYLPAHDGD+AKV+RVIDGDTVHLALK+NG F R+ CRL GID AE+ SKD  EK L E+AKS+LA ACDNKLVTLSNV LEKYGRLLADLTV G++VTLSQVML +P++CHAYDGGKK+
Sbjct:    1 MRLRKLSNLISRA-GSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKS 147          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: B5LWN7_9PHYC (Putative nuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN7_9PHYC)

HSP 1 Score: 108 bits (270), Expect = 2.320e-27
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 1
Query:   58 QDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLA-LKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKT 444
            + + +  C +YLP H+GDI  V RV DGDT  LA + + G  VR SCR++ IDT EMR K  +E+ +A  AK  L  A   K VT+   S +KYGR+LADL+   S  ++S  ML +P++C +Y GGKKT
Sbjct:    9 EPLCFRECVRYLPVHEGDIVFVCRVYDGDTCTLAWVDHAGRSVRSSCRIRDIDTPEMRGKSPEERKMASLAKERLQSAILEKFVTVWRPSSDKYGRILADLSTE-SIRSVSTYMLEMPDICKSYTGGKKT 137          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A6C0FAJ1_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAJ1_9ZZZZ)

HSP 1 Score: 102 bits (253), Expect = 1.560e-24
Identity = 58/138 (42.03%), Postives = 90/138 (65.22%), Query Frame = 1
Query:   43 NGIDWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLA--LKNNGNFV-RLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKTS 447
            +G DW DV+Y + E + P      AKV++V DGDT+ +A  L+  G+ V R S RL+GID  E+R+KD+DEK   ++A+ ++     NK+V +SN+  +KYGR+LAD+++ G +VT + +  NL  +   Y+GGKK S
Sbjct:   11 SGFDWSDVSYKTTEVFRPVFSK--AKVVKVYDGDTITVATPLQFTGSPVYRFSVRLRGIDCPEIRTKDADEKVCGQKARKIMLDQVMNKVVDVSNIDYDKYGRILADVSIDGVNVTEALITQNLAVV---YNGGKKNS 143          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A6C0CYL5_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CYL5_9ZZZZ)

HSP 1 Score: 87.8 bits (216), Expect = 8.580e-19
Identity = 59/134 (44.03%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   52 DWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALKN---NGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKT 444
            D+ +V +D+   ++P        VI+V DGDT+ +A K    N    R S RL+GID  E++SK   EK+LA  A+  LA     K V L NVSLEKYGRLLAD+   G  + ++Q MLN  +    YDGGKKT
Sbjct:   49 DFSNVEWDNTTPFVPPIKS--GYVIKVYDGDTITIAAKMPYMNSPIYRFSVRLKGIDCPEIKSKSLIEKELALNARDALANKIMRKNVILHNVSLEKYGRLLADVYCEG--IHMNQWMLN-NKFALPYDGGKKT 177          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A6C0LVU8_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LVU8_9ZZZZ)

HSP 1 Score: 84.0 bits (206), Expect = 1.560e-17
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   19 SALVCGSHNGIDW--------QDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALK---NNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKK 441
            SA +   +  ID+         ++ Y     ++P   G   KVI+V DGDT+ +A K   +N  + R S R+ GID  E++ K  +EK  A  A+  +    + K+V L NVSLEKYGR+LAD+ + G  V + Q +L    L  +YDGGKK
Sbjct:    7 SACISNKNKAIDYISEEDNLLTEIKYKETIPFIPPVTG--GKVIKVYDGDTITIASKMPWDNSPYYRFSVRINGIDCPEIKGKTENEKQCAILAREHVDHLVNGKIVHLENVSLEKYGRILADVFIEG--VNIGQSLLE-KRLAVSYDGGKK 153          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A6C0ET05_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ET05_9ZZZZ)

HSP 1 Score: 82.8 bits (203), Expect = 2.210e-17
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   61 DVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALK---NNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKK 441
            +V Y++   ++P     + KVI+V DGDT  +  K   N     R S R+ GID+ E++ K ++EK+LA++++  L+     K+VTL NVS EKYGR+LAD+ +   DV +++ ML+       YDGG K
Sbjct:    8 NVVYENTVPFVPPIT--VGKVIKVYDGDTFTIVSKLPYNGSPIYRFSVRINGIDSPEIKGKTANEKELAKKSRDALSNLILGKIVTLQNVSTEKYGRILADVYL--GDVCINEWMLS-NNYAVKYDGGTK 132          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A2E9UET5_9BACT (TNase-like domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A2E9UET5_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 9.630e-17
Identity = 47/149 (31.54%), Postives = 80/149 (53.69%), Query Frame = 1
Query:   25 LVCGSHNGIDWQDVTYDSCEKYLP-------AHDGDIAKVIRVIDGDTVHLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKTSF 450
            ++CG  +  + + + +DS    +P        HDG   KV+ V DGDTV + +K  G F R +CR++G+DT E+R+++  EK +  + +  L     +K+V +     +KYGRLL D+ +  + +T     L   +   +YDGG K S+
Sbjct:    7 VLCGCFSVCNVETMDWDSVNNDVPMFGFEGETHDG---KVVNVYDGDTVKIVMKMFGKFYRFNCRIEGVDTPELRTRNKKEKAMGIKVRDELRKKILDKMVQVKCGEFDKYGRLLVDIIIDNTSITK---WLIENKFAFSYDGGTKKSW 149          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: A0A6C0IRR9_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IRR9_9ZZZZ)

HSP 1 Score: 81.3 bits (199), Expect = 2.010e-16
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  121 VIRVIDGDTVHLALK---NNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKTSF 450
            VI+V DGDT+ +A K   N     R S RL GID  E+R+K ++EK LA  A+  L+     K ++L N+++EKYGR+LAD+ + G +  +S+ ML   +L   YDGG K +F
Sbjct:   58 VIKVYDGDTITIASKLPYNGSPLYRFSVRLNGIDAPEIRAKITEEKKLAIIARDTLSNQIMGKTISLENIAVEKYGRILADVIIDGQN--MSEYMLE-QKLAVKYDGGTKGTF 167          
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Match: X0WYP8_9ZZZZ (TNase-like domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0WYP8_9ZZZZ)

HSP 1 Score: 79.3 bits (194), Expect = 4.010e-16
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  121 VIRVIDGDTVHLALK---NNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKK 441
            VI+V DGDT+ +A K    N    R S RL GIDTAEM++KD DE ++A+ A+  L+    NK V L ++  EKYGRLLA+  V    + L++ ML   +L  +YDGG K
Sbjct:   10 VIKVYDGDTITIASKLPYRNSPMYRFSVRLFGIDTAEMKTKDKDELEMAKLARDKLSEKILNKTVILKDIRREKYGRLLAN--VYCDKICLNEWMLE-KKLAVSYDGGTK 116          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174778 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPX4_9STRA2.880e-104100.00Putative nuclease n=1 Tax=Tribonema minus TaxID=30... [more]
A0A835YYA9_9STRA2.060e-7071.62Putative nuclease n=2 Tax=Tribonema minus TaxID=30... [more]
B5LWN7_9PHYC2.320e-2746.15Putative nuclease n=1 Tax=Feldmannia species virus... [more]
A0A6C0FAJ1_9ZZZZ1.560e-2442.03TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0CYL5_9ZZZZ8.580e-1944.03TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0LVU8_9ZZZZ1.560e-1736.84TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0ET05_9ZZZZ2.210e-1738.46TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A2E9UET5_9BACT9.630e-1731.54TNase-like domain-containing protein n=2 Tax=root ... [more]
A0A6C0IRR9_9ZZZZ2.010e-1642.48TNase-like domain-containing protein n=1 Tax=viral... [more]
X0WYP8_9ZZZZ4.010e-1645.45TNase-like domain-containing protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:291544..291999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174778|e_gw1.117.130.1
Descriptionnuclease
COG categoryL
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG1525@1|root,COG1525@2|Bacteria,1N0I9@1224|Proteobacteria,2UBYJ@28211|Alphaproteobacteria,43QBE@69277|Phyllobacteriaceae
Evalue3.78e-12
Seed ortholog411684.HPDFL43_18612
Hectar predicted targeting categoryother localisation
TranscriptId175100
TrackFilteredModels1
ProteinId174778
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174778gene_5095Tribonema minus UTEX_B_3156 geneContig_117 291544..291999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5095_1exon_5095_1Tribonema minus UTEX_B_3156 exonContig_117 291544..291999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5095CDS_5095Tribonema minus UTEX_B_3156 CDSContig_117 291544..291999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174778Trimin1|174778|e_gw1.117.130.1Tribonema minus UTEX_B_3156 polypeptideContig_117 291544..291999 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5095 ID=mRNA_5095|Name=jgi.p|Trimin1|174778|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_117:291544..291999- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTGCGTAAGCTGAGTGCGCTAGTATGCGGGTCGCATAACGGCAT
CGACTGGCAGGACGTAACGTATGATAGTTGTGAAAAGTACCTACCTGCTC
ATGACGGCGACATTGCAAAGGTCATTCGCGTAATTGATGGCGATACGGTG
CATCTGGCTCTAAAGAATAACGGAAATTTTGTCAGACTTTCGTGTAGATT
ACAGGGAATCGACACTGCAGAAATGCGATCAAAGGATTCGGACGAGAAAG
ATTTAGCGGAGAGGGCAAAGTCGGTGCTGGCTGGAGCTTGCGACAACAAG
CTCGTGACATTGTCAAACGTATCGCTGGAGAAGTACGGTAGGCTCTTGGC
TGACCTGACTGTTGTGGGGTCCGACGTTACGCTGTCGCAGGTGATGCTCA
ATCTCCCGGAGTTATGTCATGCATACGATGGCGGGAAAAAGACGTCTTTT
ACATAG
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protein sequence of jgi.p|Trimin1|174778

>Trimin1|174778|e_gw1.117.130.1 ID=Trimin1|174778|e_gw1.117.130.1|Name=jgi.p|Trimin1|174778|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp
MLLRKLSALVCGSHNGIDWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTV
HLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNK
LVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKTSF
T*
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mRNA from alignment at Contig_117:291544..291999-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5095 ID=mRNA_5095|Name=jgi.p|Trimin1|174778|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_117:291544..291999- (Tribonema minus UTEX_B_3156 )
ATGCTTCTGCGTAAGCTGAGTGCGCTAGTATGCGGGTCGCATAACGGCAT CGACTGGCAGGACGTAACGTATGATAGTTGTGAAAAGTACCTACCTGCTC ATGACGGCGACATTGCAAAGGTCATTCGCGTAATTGATGGCGATACGGTG CATCTGGCTCTAAAGAATAACGGAAATTTTGTCAGACTTTCGTGTAGATT ACAGGGAATCGACACTGCAGAAATGCGATCAAAGGATTCGGACGAGAAAG ATTTAGCGGAGAGGGCAAAGTCGGTGCTGGCTGGAGCTTGCGACAACAAG CTCGTGACATTGTCAAACGTATCGCTGGAGAAGTACGGTAGGCTCTTGGC TGACCTGACTGTTGTGGGGTCCGACGTTACGCTGTCGCAGGTGATGCTCA ATCTCCCGGAGTTATGTCATGCATACGATGGCGGGAAAAAGACGTCTTTT ACATAG
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Coding sequence (CDS) from alignment at Contig_117:291544..291999-

>mRNA_5095 ID=mRNA_5095|Name=jgi.p|Trimin1|174778|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_117:291544..291999- (Tribonema minus UTEX_B_3156 )
ATGCTTCTGCGTAAGCTGAGTGCGCTAGTATGCGGGTCGCATAACGGCAT
CGACTGGCAGGACGTAACGTATGATAGTTGTGAAAAGTACCTACCTGCTC
ATGACGGCGACATTGCAAAGGTCATTCGCGTAATTGATGGCGATACGGTG
CATCTGGCTCTAAAGAATAACGGAAATTTTGTCAGACTTTCGTGTAGATT
ACAGGGAATCGACACTGCAGAAATGCGATCAAAGGATTCGGACGAGAAAG
ATTTAGCGGAGAGGGCAAAGTCGGTGCTGGCTGGAGCTTGCGACAACAAG
CTCGTGACATTGTCAAACGTATCGCTGGAGAAGTACGGTAGGCTCTTGGC
TGACCTGACTGTTGTGGGGTCCGACGTTACGCTGTCGCAGGTGATGCTCA
ATCTCCCGGAGTTATGTCATGCATACGATGGCGGGAAAAAGACGTCTTTT
ACATAG
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