mRNA_5044 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A836CPV8_9STRA (ATPase_AAA_core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV8_9STRA) HSP 1 Score: 292 bits (747), Expect = 5.850e-100 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 Query: 1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK 444 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK Sbjct: 1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK 148
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A835Z2P4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P4_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.890e-56 Identity = 89/151 (58.94%), Postives = 122/151 (80.79%), Query Frame = 1 Query: 1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 441 MD P +F++G+Q+++LVG PGSGK++++N LAQ++ AL IV +V+T G A V EK P+DFI Y+GQTAP+TR +L++S EKVLFIDEAYG+TE K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+ Sbjct: 1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRI 151
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A836CJC1_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC1_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.940e-56 Identity = 89/151 (58.94%), Postives = 123/151 (81.46%), Query Frame = 1 Query: 1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 441 +D P +F++G+Q+L+LVG PGSGK++Y+N LAQ++ AL IV +VD +G A V+EK P+DFI Y+GQTAP+TR +L++S EKVL IDEAYG+TE + K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+ Sbjct: 29 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRI 179
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: UPI0003A90B94 (AAA family ATPase n=1 Tax=Actinomadura flavalba TaxID=1120938 RepID=UPI0003A90B94) HSP 1 Score: 107 bits (268), Expect = 2.450e-24 Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438 +++I GNPG+GKT A LA+++ L ++ S + E + IGQYIG+TA +TRA++ + VLFIDEAY +T+++ GE+YGQEAV ELV + H L+VIAAGYE EM RF ++ GL+ R Sbjct: 652 RHMIFSGNPGTGKTVVARLLARIYKDLGVL-------SSGHLVEVSRAELIGQYIGETAVKTRAVVKRAVGGVLFIDEAYSLTQSDL-GEDYGQEAVAELVKLMEDHRDDLVVIAAGYEREMQRFVGSDPGLSSR 778
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A2P4UQE6_9ACTN (Stage V sporulation protein K n=5 Tax=Actinomadura TaxID=1988 RepID=A0A2P4UQE6_9ACTN) HSP 1 Score: 107 bits (266), Expect = 4.550e-24 Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438 +++I GNPG+GKT A LA+++ L ++ S + E + IGQYIG+TA +TRA++ + VLFIDEAY +T+++ GE+YG EA+ EL+ + H L+VIAAGYE EM RF ++ GLA R Sbjct: 654 RHMIFSGNPGTGKTVVARLLARIYKDLGVL-------SSGHLVEVSRAELIGQYIGETAVKTRAVVRRAVGGVLFIDEAYALTQSDL-GEDYGPEAIAELIKMMEDHRDDLVVIAAGYEREMQRFVASDPGLASR 780
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: D6RNW6_COPC7 (CbxX/CfqX family protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=D6RNW6_COPC7) HSP 1 Score: 106 bits (265), Expect = 6.450e-24 Identity = 57/133 (42.86%), Postives = 84/133 (63.16%), Query Frame = 1 Query: 37 NLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLS--THIGQLIVIAAGYEEEMMRFQVNNVGL 429 N + G PG+GKT A ++ QV+ + ++ + D E SA +D +GQY+GQT P+TRAL ++ KVLF+DEAY + E + QEAV+ELVG L+ T+ G++IVI AGY+++M R +N GL Sbjct: 1837 NFVFTGPPGTGKTTIARKMGQVYYDMGLLASTDVFECSA-------SDLVGQYVGQTGPKTRALFDKALGKVLFVDEAYRLAEGH-----FAQEAVDELVGLLTHETYKGKVIVILAGYDQDMKRLMQSNTGL 1957
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A4R5BY78_9ACTN (AAA family ATPase n=8 Tax=Actinomadura TaxID=1988 RepID=A0A4R5BY78_9ACTN) HSP 1 Score: 103 bits (257), Expect = 1.120e-23 Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGL 429 ++++ GNPG+GKT A L +++ L ++ + E S +G+YIGQTAPRTR L+ + VLFIDEAY +T++ KG+ YG EA+ ELV + H L+VI AGY++EM F V N GL Sbjct: 93 RHMVFTGNPGTGKTMVARLLGRIYKRLGVLSSGHLVEASRA-------HLVGEYIGQTAPRTRRLVERAIGGVLFIDEAYTLTQSPLKGD-YGHEAIAELVKLMEDHRDDLVVIVAGYQQEMAEFLVANPGL 216
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A7W3QRI5_ACTNM (SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=3 Tax=Actinomadura TaxID=1988 RepID=A0A7W3QRI5_ACTNM) HSP 1 Score: 105 bits (263), Expect = 1.150e-23 Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 1 Query: 4 DAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438 DA A + ++LI GNPG+GKTE A LA+ + L ++ S + E + +GQY+G+TA +TRA++ + VLFIDEAY + +++ E+YG EA+ ELV + H L+VIAAGY++EM RF N GLA R Sbjct: 643 DAGLATVSPSRHLIFTGNPGTGKTEVARLLARFYKGLGVL-------SSGHLVEVSRSHLVGQYLGETAAKTRAVVRRAVGGVLFIDEAYALAQSDLD-EDYGAEAIAELVKLMEDHRDDLVVIAAGYDKEMRRFITANPGLASR 779
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: UPI000E27F5D6 (AAA family ATPase n=1 Tax=Lewinella sp. IMCC34183 TaxID=2248762 RepID=UPI000E27F5D6) HSP 1 Score: 104 bits (260), Expect = 2.850e-23 Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 1 Query: 43 ILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK 444 + GNPG+GKT A + +++ + ++ + G V+ ++V D +G+YIGQTAP+TR ++ + VLFIDEAY + N G+++G+E + LV +S +G L VI AGY +EM RF +N GL R K Sbjct: 361 VFSGNPGTGKTTVARMMGKLYKKMGLLTS-----GHTVIADRV--DLVGEYIGQTAPKTREVIESARGGVLFIDEAYSLARNNDDGKDFGREVIEILVKEMSNGVGDLAVIVAGYTDEMNRFLESNTGLKSRFK 487
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: UPI00082BF1E8 (AAA family ATPase n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00082BF1E8) HSP 1 Score: 104 bits (260), Expect = 2.920e-23 Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 1 Query: 34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438 +++I GNPG+GKTE A LA+++ + ++ S + E + +GQY+G+TA +TRA + + VLFIDEAY + +++ GE+YG EA++ELV + H L+VIAAGYE EM RF + GLA R Sbjct: 652 RHMIFTGNPGTGKTEVARLLARLYKDMGVL-------SSGHLVEVSRSQLVGQYLGETAVKTRAAVQRAVGGVLFIDEAYSLAQSDL-GEDYGTEAISELVKMMEDHRDDLVVIAAGYEREMARFVAADPGLASR 778 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5044 ID=mRNA_5044|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_117:183365..183808- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACGCTCCGAAAGCGTTCCTCGAGGGCTTTCAAAACCTCATACTGGTback to top protein sequence of jgi.p|Trimin1|174738 >Trimin1|174738|e_gw1.117.90.1 ID=Trimin1|174738|e_gw1.117.90.1|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSback to top mRNA from alignment at Contig_117:183365..183808- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5044 ID=mRNA_5044|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_117:183365..183808- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_117:183365..183808- >mRNA_5044 ID=mRNA_5044|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_117:183365..183808- (Tribonema minus UTEX_B_3156 )back to top |