mRNA_5044 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174738
Unique NamemRNA_5044
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A836CPV8_9STRA (ATPase_AAA_core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV8_9STRA)

HSP 1 Score: 292 bits (747), Expect = 5.850e-100
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
Query:    1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK 444
            MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK
Sbjct:    1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK 148          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A835Z2P4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P4_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.890e-56
Identity = 89/151 (58.94%), Postives = 122/151 (80.79%), Query Frame = 1
Query:    1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 441
            MD P +F++G+Q+++LVG PGSGK++++N LAQ++ AL IV +V+T  G A V EK P+DFI  Y+GQTAP+TR +L++S EKVLFIDEAYG+TE       K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+
Sbjct:    1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRI 151          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A836CJC1_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC1_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.940e-56
Identity = 89/151 (58.94%), Postives = 123/151 (81.46%), Query Frame = 1
Query:    1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 441
            +D P +F++G+Q+L+LVG PGSGK++Y+N LAQ++ AL IV +VD  +G A V+EK P+DFI  Y+GQTAP+TR +L++S EKVL IDEAYG+TE     + K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+
Sbjct:   29 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRI 179          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: UPI0003A90B94 (AAA family ATPase n=1 Tax=Actinomadura flavalba TaxID=1120938 RepID=UPI0003A90B94)

HSP 1 Score: 107 bits (268), Expect = 2.450e-24
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438
            +++I  GNPG+GKT  A  LA+++  L ++        S  + E    + IGQYIG+TA +TRA++  +   VLFIDEAY +T+++  GE+YGQEAV ELV  +  H   L+VIAAGYE EM RF  ++ GL+ R
Sbjct:  652 RHMIFSGNPGTGKTVVARLLARIYKDLGVL-------SSGHLVEVSRAELIGQYIGETAVKTRAVVKRAVGGVLFIDEAYSLTQSDL-GEDYGQEAVAELVKLMEDHRDDLVVIAAGYEREMQRFVGSDPGLSSR 778          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A2P4UQE6_9ACTN (Stage V sporulation protein K n=5 Tax=Actinomadura TaxID=1988 RepID=A0A2P4UQE6_9ACTN)

HSP 1 Score: 107 bits (266), Expect = 4.550e-24
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 1
Query:   34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438
            +++I  GNPG+GKT  A  LA+++  L ++        S  + E    + IGQYIG+TA +TRA++  +   VLFIDEAY +T+++  GE+YG EA+ EL+  +  H   L+VIAAGYE EM RF  ++ GLA R
Sbjct:  654 RHMIFSGNPGTGKTVVARLLARIYKDLGVL-------SSGHLVEVSRAELIGQYIGETAVKTRAVVRRAVGGVLFIDEAYALTQSDL-GEDYGPEAIAELIKMMEDHRDDLVVIAAGYEREMQRFVASDPGLASR 780          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: D6RNW6_COPC7 (CbxX/CfqX family protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=D6RNW6_COPC7)

HSP 1 Score: 106 bits (265), Expect = 6.450e-24
Identity = 57/133 (42.86%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   37 NLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLS--THIGQLIVIAAGYEEEMMRFQVNNVGL 429
            N +  G PG+GKT  A ++ QV+  + ++ + D  E SA       +D +GQY+GQT P+TRAL  ++  KVLF+DEAY + E       + QEAV+ELVG L+  T+ G++IVI AGY+++M R   +N GL
Sbjct: 1837 NFVFTGPPGTGKTTIARKMGQVYYDMGLLASTDVFECSA-------SDLVGQYVGQTGPKTRALFDKALGKVLFVDEAYRLAEGH-----FAQEAVDELVGLLTHETYKGKVIVILAGYDQDMKRLMQSNTGL 1957          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A4R5BY78_9ACTN (AAA family ATPase n=8 Tax=Actinomadura TaxID=1988 RepID=A0A4R5BY78_9ACTN)

HSP 1 Score: 103 bits (257), Expect = 1.120e-23
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 1
Query:   34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGL 429
            ++++  GNPG+GKT  A  L +++  L ++ +    E S           +G+YIGQTAPRTR L+  +   VLFIDEAY +T++  KG+ YG EA+ ELV  +  H   L+VI AGY++EM  F V N GL
Sbjct:   93 RHMVFTGNPGTGKTMVARLLGRIYKRLGVLSSGHLVEASRA-------HLVGEYIGQTAPRTRRLVERAIGGVLFIDEAYTLTQSPLKGD-YGHEAIAELVKLMEDHRDDLVVIVAGYQQEMAEFLVANPGL 216          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: A0A7W3QRI5_ACTNM (SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=3 Tax=Actinomadura TaxID=1988 RepID=A0A7W3QRI5_ACTNM)

HSP 1 Score: 105 bits (263), Expect = 1.150e-23
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    4 DAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438
            DA  A +   ++LI  GNPG+GKTE A  LA+ +  L ++        S  + E   +  +GQY+G+TA +TRA++  +   VLFIDEAY + +++   E+YG EA+ ELV  +  H   L+VIAAGY++EM RF   N GLA R
Sbjct:  643 DAGLATVSPSRHLIFTGNPGTGKTEVARLLARFYKGLGVL-------SSGHLVEVSRSHLVGQYLGETAAKTRAVVRRAVGGVLFIDEAYALAQSDLD-EDYGAEAIAELVKLMEDHRDDLVVIAAGYDKEMRRFITANPGLASR 779          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: UPI000E27F5D6 (AAA family ATPase n=1 Tax=Lewinella sp. IMCC34183 TaxID=2248762 RepID=UPI000E27F5D6)

HSP 1 Score: 104 bits (260), Expect = 2.850e-23
Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   43 ILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK 444
            +  GNPG+GKT  A  + +++  + ++ +     G  V+ ++V  D +G+YIGQTAP+TR ++  +   VLFIDEAY +  N   G+++G+E +  LV  +S  +G L VI AGY +EM RF  +N GL  R K
Sbjct:  361 VFSGNPGTGKTTVARMMGKLYKKMGLLTS-----GHTVIADRV--DLVGEYIGQTAPKTREVIESARGGVLFIDEAYSLARNNDDGKDFGREVIEILVKEMSNGVGDLAVIVAGYTDEMNRFLESNTGLKSRFK 487          
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Match: UPI00082BF1E8 (AAA family ATPase n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00082BF1E8)

HSP 1 Score: 104 bits (260), Expect = 2.920e-23
Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   34 QNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARR 438
            +++I  GNPG+GKTE A  LA+++  + ++        S  + E   +  +GQY+G+TA +TRA +  +   VLFIDEAY + +++  GE+YG EA++ELV  +  H   L+VIAAGYE EM RF   + GLA R
Sbjct:  652 RHMIFTGNPGTGKTEVARLLARLYKDMGVL-------SSGHLVEVSRSQLVGQYLGETAVKTRAAVQRAVGGVLFIDEAYSLAQSDL-GEDYGTEAISELVKMMEDHRDDLVVIAAGYEREMARFVAADPGLASR 778          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174738 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPV8_9STRA5.850e-100100.00ATPase_AAA_core domain-containing protein (Fragmen... [more]
A0A835Z2P4_9STRA1.890e-5658.94P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CJC1_9STRA1.940e-5658.94AAA domain-containing protein (Fragment) n=2 Tax=T... [more]
UPI0003A90B942.450e-2445.19AAA family ATPase n=1 Tax=Actinomadura flavalba Ta... [more]
A0A2P4UQE6_9ACTN4.550e-2443.70Stage V sporulation protein K n=5 Tax=Actinomadura... [more]
D6RNW6_COPC76.450e-2442.86CbxX/CfqX family protein n=1 Tax=Coprinopsis ciner... [more]
A0A4R5BY78_9ACTN1.120e-2342.42AAA family ATPase n=8 Tax=Actinomadura TaxID=1988 ... [more]
A0A7W3QRI5_ACTNM1.150e-2342.07SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=3 Tax=A... [more]
UPI000E27F5D62.850e-2339.55AAA family ATPase n=1 Tax=Lewinella sp. IMCC34183 ... [more]
UPI00082BF1E82.920e-2342.22AAA family ATPase n=1 Tax=Actinomadura hibisca Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:183365..183808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174738|e_gw1.117.90.1
DescriptionATPase family associated with various cellular activities (AAA)
COG categoryO
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0464@1|root,COG0464@2|Bacteria,2GJWA@201174|Actinobacteria,4END9@85012|Streptosporangiales
Evalue4.01e-25
Seed ortholog561175.KB894095_gene2522
Hectar predicted targeting categoryother localisation
TranscriptId175060
TrackFilteredModels1
ProteinId174738
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174738gene_5044Tribonema minus UTEX_B_3156 geneContig_117 183365..183808 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5044_1exon_5044_1Tribonema minus UTEX_B_3156 exonContig_117 183365..183808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5044CDS_5044Tribonema minus UTEX_B_3156 CDSContig_117 183365..183808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174738Trimin1|174738|e_gw1.117.90.1Tribonema minus UTEX_B_3156 polypeptideContig_117 183365..183808 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5044 ID=mRNA_5044|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_117:183365..183808- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTCCGAAAGCGTTCCTCGAGGGCTTTCAAAACCTCATACTGGT
CGGCAACCCTGGAAGTGGTAAGACAGAGTATGCGAACCGACTCGCTCAGG
TGTTCAGTGCGCTGAACATTGTGTGCAACGTTGACACCCATGAAGGTTCA
GCAGTGGTCCGGGAAAAGGTACCCACTGACTTCATCGGCCAGTACATAGG
GCAGACGGCACCGCGGACCAGGGCGCTGCTCCTGGAGAGCACCGAGAAGG
TACTCTTCATAGACGAAGCGTACGGGATCACTGAAAACGAAAAAAAAGGA
GAAGAATACGGGCAAGAGGCCGTCAATGAGCTGGTGGGCTACCTCAGTAC
TCACATCGGCCAGCTGATTGTGATAGCGGCAGGATACGAGGAGGAGATGA
TGAGGTTTCAAGTGAACAACGTGGGACTGGCCAGACGCATGAAG
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protein sequence of jgi.p|Trimin1|174738

>Trimin1|174738|e_gw1.117.90.1 ID=Trimin1|174738|e_gw1.117.90.1|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp
MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGS
AVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITENEKKG
EEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRMK
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mRNA from alignment at Contig_117:183365..183808-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5044 ID=mRNA_5044|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_117:183365..183808- (Tribonema minus UTEX_B_3156 )
ATGGACGCTCCGAAAGCGTTCCTCGAGGGCTTTCAAAACCTCATACTGGT CGGCAACCCTGGAAGTGGTAAGACAGAGTATGCGAACCGACTCGCTCAGG TGTTCAGTGCGCTGAACATTGTGTGCAACGTTGACACCCATGAAGGTTCA GCAGTGGTCCGGGAAAAGGTACCCACTGACTTCATCGGCCAGTACATAGG GCAGACGGCACCGCGGACCAGGGCGCTGCTCCTGGAGAGCACCGAGAAGG TACTCTTCATAGACGAAGCGTACGGGATCACTGAAAACGAAAAAAAAGGA GAAGAATACGGGCAAGAGGCCGTCAATGAGCTGGTGGGCTACCTCAGTAC TCACATCGGCCAGCTGATTGTGATAGCGGCAGGATACGAGGAGGAGATGA TGAGGTTTCAAGTGAACAACGTGGGACTGGCCAGACGCATGAAG
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Coding sequence (CDS) from alignment at Contig_117:183365..183808-

>mRNA_5044 ID=mRNA_5044|Name=jgi.p|Trimin1|174738|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_117:183365..183808- (Tribonema minus UTEX_B_3156 )
ATGGACGCTCCGAAAGCGTTCCTCGAGGGCTTTCAAAACCTCATACTGGT
CGGCAACCCTGGAAGTGGTAAGACAGAGTATGCGAACCGACTCGCTCAGG
TGTTCAGTGCGCTGAACATTGTGTGCAACGTTGACACCCATGAAGGTTCA
GCAGTGGTCCGGGAAAAGGTACCCACTGACTTCATCGGCCAGTACATAGG
GCAGACGGCACCGCGGACCAGGGCGCTGCTCCTGGAGAGCACCGAGAAGG
TACTCTTCATAGACGAAGCGTACGGGATCACTGAAAACGAAAAAAAAGGA
GAAGAATACGGGCAAGAGGCCGTCAATGAGCTGGTGGGCTACCTCAGTAC
TCACATCGGCCAGCTGATTGTGATAGCGGCAGGATACGAGGAGGAGATGA
TGAGGTTTCAAGTGAACAACGTGGGACTGGCCAGACGCATGAAG
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