mRNA_491 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156088
Unique NamemRNA_491
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A835YYR9_9STRA (Ribosomal protein S16 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.200e-36
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 LKKLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            LKKLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG
Sbjct:    1 LKKLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 60
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BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: B7T1T4_VAULI (30S ribosomal protein S16, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1T4_VAULI)

HSP 1 Score: 114 bits (284), Expect = 7.980e-32
Identity = 53/58 (91.38%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            KLRLKRCGRKKQPFYKIVVMN++SRRDG+AIEELGFYNPLNKTFKI+KGRTIYRL+QG
Sbjct:    3 KLRLKRCGRKKQPFYKIVVMNANSRRDGFAIEELGFYNPLNKTFKINKGRTIYRLKQG 60
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BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A7S6UA28_9STRA (30S ribosomal protein S16, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA28_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.980e-22
Identity = 39/58 (67.24%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            KLRLKRCGRKK+PFY+IVVMN+ ++RDG AIE+LG+YNP+ KTF +++ RT+ RL+QG
Sbjct:    3 KLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQG 60
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BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A8F0F7A6_9PHAE (Ribosomal protein S16 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.910e-22
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            K+R KRCGRKKQPFY+IV+M++ ++RDG  +EELGFYNPLNKTF+I++ RTI RL  G
Sbjct:    3 KIRFKRCGRKKQPFYRIVLMDNKTKRDGNVVEELGFYNPLNKTFQINRVRTIIRLDNG 60
[Close]
BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A1I9LW03_9PHAE (30S ribosomal protein S16, chloroplastic n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A1I9LW03_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.070e-19
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            K+R KR GRKKQPFY+IVVM+  ++RDG A+EELGFY+P+NKTF+I++ RTI RL  G
Sbjct:    3 KIRFKRGGRKKQPFYRIVVMDVKTKRDGKALEELGFYDPMNKTFQINRERTIIRLANG 60
[Close]
BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A8E5XRF9_9PHAE (30S ribosomal protein S16, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRF9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.290e-19
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            K+RLKR GRKK+PFY+IV+M++S++RDG AIEELGFYNPLNK F I++ R I R++ G
Sbjct:    3 KIRLKRFGRKKKPFYRIVLMDASTKRDGKAIEELGFYNPLNKIFYINRERIIMRIKTG 60
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BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A8F0FAS3_9PHAE (Ribosomal protein S16 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAS3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.080e-19
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            K+R K CGRKKQPFY+IVVM+  ++RDG  +EELGFYNP+NKT  I++ RTI RL  G
Sbjct:    3 KIRFKLCGRKKQPFYRIVVMDVRTKRDGKVLEELGFYNPMNKTLHINRERTISRLNHG 60
[Close]
BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A141BSI6_9PHAE (30S ribosomal protein S16, chloroplastic n=16 Tax=Fucales TaxID=3009 RepID=A0A141BSI6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.780e-18
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            K+R KR GRKKQPFYKIVVM+  ++RDG A+EELGFYNP+ KT  I+  RTI RL+ G
Sbjct:    3 KIRFKRTGRKKQPFYKIVVMDVRTKRDGKALEELGFYNPITKTLNINCERTISRLKNG 60
[Close]
BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A410D2P4_9STRA (Ribosomal protein S16 n=1 Tax=Pseudellipsoidion edaphicum TaxID=1431838 RepID=A0A410D2P4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.790e-18
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            K+RLKRCGRKK P Y+IV++ S SRRDG AIEELGFYNPL+     +K R ++RL QG
Sbjct:    3 KIRLKRCGRKKSPSYRIVLVPSQSRRDGRAIEELGFYNPLSNQLVYNKERIVFRLNQG 60
[Close]
BLAST of jgi.p|Trimin1|156088 vs. uniprot
Match: A0A6F8SGL4_NEODN (30S ribosomal protein S16, chloroplastic n=1 Tax=Neoporphyra dentata TaxID=76160 RepID=A0A6F8SGL4_NEODN)

HSP 1 Score: 79.0 bits (193), Expect = 5.830e-18
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    7 KLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDKGRTIYRLQQG 180
            KLRLKR GRKKQP Y+IVVM+S ++RDG AIEELGFYNP+N   ++D  + + RL QG
Sbjct:    3 KLRLKRYGRKKQPSYRIVVMDSRNKRDGKAIEELGFYNPINNETRVDISKVLQRLAQG 60
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156088 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYR9_9STRA3.200e-36100.00Ribosomal protein S16 domain-containing protein (F... [more]
B7T1T4_VAULI7.980e-3291.3830S ribosomal protein S16, chloroplastic n=1 Tax=V... [more]
A0A7S6UA28_9STRA2.980e-2267.2430S ribosomal protein S16, chloroplastic n=1 Tax=S... [more]
A0A8F0F7A6_9PHAE3.910e-2267.24Ribosomal protein S16 n=1 Tax=Protohalopteris sp. ... [more]
A0A1I9LW03_9PHAE1.070e-1965.5230S ribosomal protein S16, chloroplastic n=2 Tax=C... [more]
A0A8E5XRF9_9PHAE2.290e-1965.5230S ribosomal protein S16, chloroplastic n=1 Tax=I... [more]
A0A8F0FAS3_9PHAE3.080e-1963.79Ribosomal protein S16 n=1 Tax=Desmarestia aculeata... [more]
A0A141BSI6_9PHAE1.780e-1865.5230S ribosomal protein S16, chloroplastic n=16 Tax=... [more]
A0A410D2P4_9STRA3.790e-1863.79Ribosomal protein S16 n=1 Tax=Pseudellipsoidion ed... [more]
A0A6F8SGL4_NEODN5.830e-1863.7930S ribosomal protein S16, chloroplastic n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1862034..1862213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156088|gw1.3.553.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
KEGG ModuleM00178
KEGG Pathwayko03010,map03010
KEGG koko:K02959
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred namerps16
Descriptionribosomal protein s16
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0228@1|root,KOG3419@2759|Eukaryota
Evalue1.69e-18
Seed ortholog2880.D1J702
Hectar predicted targeting categoryother localisation
TranscriptId156410
TrackFilteredModels1
ProteinId156088
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156088gene_491Tribonema minus UTEX_B_3156 geneContig_3 1862034..1862213 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_491_1exon_491_1Tribonema minus UTEX_B_3156 exonContig_3 1862034..1862213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_491CDS_491Tribonema minus UTEX_B_3156 CDSContig_3 1862034..1862213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156088Trimin1|156088|gw1.3.553.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1862034..1862213 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_491 ID=mRNA_491|Name=jgi.p|Trimin1|156088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_3:1862034..1862213- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTAAAAAAATTAAGGCTTAAACGCTGTGGCCGAAAAAAACAACCGTTTTA
CAAAATTGTGGTAATGAATAGTTCTTCACGTCGTGATGGTTATGCTATCG
AAGAGCTTGGTTTTTATAATCCTTTAAATAAAACTTTTAAAATTGATAAA
GGACGCACAATTTATAGACTTCAACAAGGG
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protein sequence of jgi.p|Trimin1|156088

>Trimin1|156088|gw1.3.553.1 ID=Trimin1|156088|gw1.3.553.1|Name=jgi.p|Trimin1|156088|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=60bp
LKKLRLKRCGRKKQPFYKIVVMNSSSRRDGYAIEELGFYNPLNKTFKIDK
GRTIYRLQQG
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mRNA from alignment at Contig_3:1862034..1862213-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_491 ID=mRNA_491|Name=jgi.p|Trimin1|156088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_3:1862034..1862213- (Tribonema minus UTEX_B_3156 )
TTAAAAAAATTAAGGCTTAAACGCTGTGGCCGAAAAAAACAACCGTTTTA
CAAAATTGTGGTAATGAATAGTTCTTCACGTCGTGATGGTTATGCTATCG
AAGAGCTTGGTTTTTATAATCCTTTAAATAAAACTTTTAAAATTGATAAA
GGACGCACAATTTATAGACTTCAACAAGGG
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Coding sequence (CDS) from alignment at Contig_3:1862034..1862213-

>mRNA_491 ID=mRNA_491|Name=jgi.p|Trimin1|156088|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=180bp|location=Sequence derived from alignment at Contig_3:1862034..1862213- (Tribonema minus UTEX_B_3156 )
TTAAAAAAATTAAGGCTTAAACGCTGTGGCCGAAAAAAACAACCGTTTTA
CAAAATTGTGGTAATGAATAGTTCTTCACGTCGTGATGGTTATGCTATCG
AAGAGCTTGGTTTTTATAATCCTTTAAATAAAACTTTTAAAATTGATAAA
GGACGCACAATTTATAGACTTCAACAAGGG
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