mRNA_4871 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A835Z275_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z275_9STRA) HSP 1 Score: 402 bits (1034), Expect = 1.010e-139 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 2 Query: 80 MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPRAAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAEEPGGLTVFVCLIVIMGVLAVILRLG 778 MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPRAAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAEEPGGLTVFVCLIVIMGVLAVILRLG Sbjct: 1 MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPRAAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAEEPGGLTVFVCLIVIMGVLAVILRLG 233
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A6H5JE14_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE14_9PHAE) HSP 1 Score: 242 bits (618), Expect = 3.990e-76 Identity = 108/160 (67.50%), Postives = 135/160 (84.38%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556 + SDM+ +RLR E MA+++NP++NI A+P++ NILEWHYVITGTKG+P+EGG+YHG L+FP EYP+KPPS++M TPNGRFA +RRLCLS SDFHPESWNPVW VSTILMGLYSFMLD A TLGS+T+S A K++FA ESL N ++ F LFP+L +LH Sbjct: 1 MASDMATKRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPVWSVSTILMGLYSFMLDNAATLGSITSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELH 160
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A7R9W6X2_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6X2_9STRA) HSP 1 Score: 241 bits (614), Expect = 5.160e-76 Identity = 117/174 (67.24%), Postives = 136/174 (78.16%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVEN--IQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPR 592 + +DM RRL E +LQKNP+ N I A P E+NILEWHYVI G+KGTP+EGG+YHG L FP EYPLKPPS++M TP+GRF NRRLCLS SDFHPESWNP+W VSTIL GLYSFM++TAPTLGS+ TS A KRK A +SL FNVRD NFC LFP+ ADLH +K+LE R Sbjct: 1 MANDMCTRRLTRELQSLQKNPLLNPRIVATPHESNILEWHYVIEGSKGTPYEGGHYHGKLVFPKEYPLKPPSVIMLTPSGRFKPNRRLCLSMSDFHPESWNPMWSVSTILTGLYSFMVETAPTLGSIETSEAQKRKLARQSLDFNVRDSNFCTLFPDYADLH-----KKRLEER 169
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A7S2H9E8_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2H9E8_9STRA) HSP 1 Score: 234 bits (598), Expect = 1.080e-73 Identity = 110/162 (67.90%), Postives = 129/162 (79.63%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVEN--IQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556 + +DM RRL E +LQKNP+ + I A+P E NILEWHYVI G GTP+EGG+YHG L FP EYPLKPPS++M TP+GRF NRRLCLS SDFHPESWNP+W VSTIL GLYSFM++TAPTLGS+ TS A KRKFA +SL FNVRD+ FC LFP+L +LH Sbjct: 1 MANDMCVRRLTRELQSLQKNPLHSPRIVAMPNEENILEWHYVIEGNTGTPYEGGHYHGKLIFPKEYPLKPPSVIMLTPSGRFKPNRRLCLSMSDFHPESWNPMWSVSTILTGLYSFMVETAPTLGSIETSTAQKRKFARQSLDFNVRDQMFCKLFPDLVELH 162
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A8K1FI92_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI92_PYTOL) HSP 1 Score: 228 bits (581), Expect = 6.120e-72 Identity = 106/160 (66.25%), Postives = 124/160 (77.50%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556 + S M+ RLR E +ALQK PVENI+A PLE NILEWHYVITGT TP+EGGYYHG LRFP EYP+KPPS+LM TPNGRF NRR+CLS SDFHPE+WNP+W V +IL GLYSFML+ T G + TS KR+FA+ SLA N +DK F LFP+L +LH Sbjct: 1 MASSMATSRLRKEYIALQKKPVENIRAAPLEKNILEWHYVITGTADTPYEGGYYHGKLRFPPEYPMKPPSVLMLTPNGRFEVNRRICLSMSDFHPETWNPLWSVGSILTGLYSFMLENEITTGGIETSDDEKREFAQASLATNCQDKTFQTLFPDLVELH 160
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A8K1FJB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJB7_PYTOL) HSP 1 Score: 229 bits (584), Expect = 1.160e-71 Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556 + S M+ +RLR E +A+Q+ PVENIQALPLE+NILEWHYVI GT GTP+EGGYYHG L+FP EYP+KPPS++M TPNGRF TN+RLCLS SDFHPE+WNP+W VS+IL GLYSFM++ T GS+ T+ A KRK A ESL N + F LFPEL +LH Sbjct: 1 MASAMATKRLRKEYLAIQRKPVENIQALPLESNILEWHYVIQGTSGTPYEGGYYHGCLKFPPEYPMKPPSVMMMTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMIENQSTYGSIKTTDAQKRKHAAESLEVNCNNALFRKLFPELVELH 160
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A7S2A1W1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1W1_TRICV) HSP 1 Score: 229 bits (583), Expect = 2.350e-71 Identity = 114/174 (65.52%), Postives = 132/174 (75.86%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVEN--IQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQLEPR 592 + SDM RRL E ALQKNP+ N I A+P ETNILEWHYV+ GT P+EGG+YHG L FP EYPLKPPS++M TP+GRF NRRLCLS SDFHPESWNP+W VSTIL GLYSFM++TAPTLGS+ TS KRK A +SL FNVRD NFC LFP+ +LH +K+LE R Sbjct: 1 MASDMCTRRLTRELRALQKNPLMNPRIVAVPNETNILEWHYVLEGTG--PYEGGHYHGKLIFPKEYPLKPPSVIMLTPSGRFKPNRRLCLSMSDFHPESWNPMWSVSTILTGLYSFMVETAPTLGSIETSDGQKRKLARQSLDFNVRDSNFCKLFPDYVELH-----KKRLEER 167
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA) HSP 1 Score: 228 bits (582), Expect = 3.120e-71 Identity = 105/169 (62.13%), Postives = 134/169 (79.29%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVALELQKQL 583 + S M+ +RLR E +A+Q+ PV+ IQA+P+ETNILEWHYVITGTKGTP+EGGYYHG L+FP EYP+KPPS++M TPNGRF TN+RLCLS SDFHPE+WNP+W VS+IL GLYSFML+T TLGS++T+ A KRK+A SL N + F LFP+L L + +++L Sbjct: 1 MASVMATKRLRKEYLAMQRKPVDYIQAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPEYPMKPPSVMMTTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLETQATLGSISTTDAQKRKYAAASLEANCTNATFRKLFPDLVTLQEQRDKEQEL 169
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: K3WBL8_GLOUD (UBC core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBL8_GLOUD) HSP 1 Score: 226 bits (575), Expect = 6.040e-71 Identity = 104/160 (65.00%), Postives = 123/160 (76.88%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLH 556 + S M+ RLR E + LQ+ PV+NIQA P E NILEWHYVITGT +P+EGGYYHG LRFP EYP+KPP++LM TPNGRF NRR+CLS SDFHPE+WNPVW V +IL GLYSFML+ T GS+ T+ KRKFA ESLA N +K+FC LFP L +LH Sbjct: 1 MASAMATNRLRKEYVNLQRKPVDNIQAAPQEKNILEWHYVITGTPDSPYEGGYYHGKLRFPPEYPMKPPAVLMLTPNGRFEVNRRICLSMSDFHPETWNPVWAVGSILTGLYSFMLEDQITTGSIETTDEEKRKFAAESLAVNCTNKDFCTLFPHLVELH 160
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: H3GEL5_PHYRM (UBC core domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEL5_PHYRM) HSP 1 Score: 226 bits (575), Expect = 9.610e-71 Identity = 103/162 (63.58%), Postives = 129/162 (79.63%), Query Frame = 2 Query: 77 VMSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAEYPLKPPSILMYTPNGRFATNRRLCLSNSDFHPESWNPVWGVSTILMGLYSFMLDTAPTLGSVTTSAAAKRKFAEESLAFNVRDKNFCALFPELADLHVA 562 + S M+ +RLR E +ALQKNPVENI+A PLE NILEWHYVI+GT+GTP+EGG+YHG L+FP+EYP+KPP+++M TPNGRF TNRR+CLS SDFHPE+WNP+W V +IL GLYSFML+ T GS+ T+ KR +A SL +N +DKNF LF EL +L A Sbjct: 1 MASAMATKRLRKEYLALQKNPVENIRAAPLEKNILEWHYVISGTEGTPYEGGFYHGKLKFPSEYPMKPPAVIMCTPNGRFETNRRICLSMSDFHPETWNPLWAVGSILTGLYSFMLEDKITTGSIETTEEDKRTYATVSLEYNCKDKNFRGLFTELVELQNA 162
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Match: A0A835ZBQ0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ0_9STRA) HSP 1 Score: 2168 bits (5617), Expect = 0.000e+0 Identity = 1243/1243 (100.00%), Postives = 1243/1243 (100.00%), Query Frame = 1 Query: 1 MSDSEAIAVGKALRAVDERSLEAWLHWVRQGGTAVCSDIWREAWDSFRPRTNADLTFGPNDPAHNEVVFLRDAGSGSAANEAQALAVQVPVVELGADGLPAVQSETGDVAAARTVAAALRESDVLRLGKCRVTGDAVVGSGGARAPPLWLRVAVVSVREECVVLARRCGEWGAPLAECDSAHGGLLEVPLARLAGAVVLRERGDSRSAAAAPPLPPPDFRTAAAAGCTVVAFALPLPSAEWGLAWLRAAAAEDCRLGGADSLAARAEGGALSAAAALQAEAARERXXXRDRALRDRADARVREARALLPRLSPARALRRDAWAAVGRALFAAEGGRRGRGALRAEWARWTEAAAAAVEAGQQFSAEGQRAXXXXXXQQRAGLPARPXXXXXXXXXXXXGGAAGAVAAADDCRAAWLRFRPRTSLDAPALVNLRAWVQSSRRPRPRAAPWRSGAGSSSVCDTFSDCMRANASDAAAAKLAEFSGAHLKGDSNRLAGGAPTATLSSALRGDALARAKQMVKELPERTRTVLQFLEPSSEPLQVPAVSMVRTPLSGPPAGPPSGFLMGEGLFPLPPGKGIGGXXXXXXXXGDRRGQKGLTLVPRDVVAEVRPGDWLLVTSGTGGYKGVWRQVVGLSVLQPAVMVRARGSRAYGAQSDGSPWQLPRRRTEAARGSAAXXXXXXXXXXXXXXXXXDARRARSGSDAWRPLRVGLEELWGAWVFRDDEPCASQDFNTDAPGARWSEPPPPRTGCVGLAFQLPVPDAAGAVDELRRWARSDAAEPEHTPRTTASGGDGISASRVPSDSKIQHNSAQHRDANSYLPSNTRRSXXXXXXXXXXXXXXXXXRALLLPAPMLRALERGVARLLVAWSGAGEARVELLSTEPPRADAGSSAAAAAAPLRSAWRAVYAGAAGACEVTGLRQCSTYTLRVRAAGRRVALLRACTLAAAPPRAPLLARWLPRGGGGAHERVAVIEMGCDCAAAAGRWVLRRRRLPMLSADLAADQQTALATARQWSAIGGDTSADAGPEASVNAAGGRVFEVYRGRKGEAAVGGLEGYRGGWSPALPVTVPQQLRARQSHPPSRAQHTSGRSGSAAEADGDAQAVVRALGPRLSAAQQRRVTAAFARVLRSGGASSSGSDCSAGSRLRSSSSSTERGSGSGXXXXXXXXXXXXXXXXGASGKRDARQNSRKGRLPRGWRRVHDGAGGAAFYVNDGAGVAQWTRPQAWQEEAVALDLGDAAAAMRFEHD 3729 MSDSEAIAVGKALRAVDERSLEAWLHWVRQGGTAVCSDIWREAWDSFRPRTNADLTFGPNDPAHNEVVFLRDAGSGSAANEAQALAVQVPVVELGADGLPAVQSETGDVAAARTVAAALRESDVLRLGKCRVTGDAVVGSGGARAPPLWLRVAVVSVREECVVLARRCGEWGAPLAECDSAHGGLLEVPLARLAGAVVLRERGDSRSAAAAPPLPPPDFRTAAAAGCTVVAFALPLPSAEWGLAWLRAAAAEDCRLGGADSLAARAEGGALSAAAALQAEAARERXXXRDRALRDRADARVREARALLPRLSPARALRRDAWAAVGRALFAAEGGRRGRGALRAEWARWTEAAAAAVEAGQQFSAEGQRAXXXXXXQQRAGLPARPXXXXXXXXXXXXGGAAGAVAAADDCRAAWLRFRPRTSLDAPALVNLRAWVQSSRRPRPRAAPWRSGAGSSSVCDTFSDCMRANASDAAAAKLAEFSGAHLKGDSNRLAGGAPTATLSSALRGDALARAKQMVKELPERTRTVLQFLEPSSEPLQVPAVSMVRTPLSGPPAGPPSGFLMGEGLFPLPPGKGIGGXXXXXXXXGDRRGQKGLTLVPRDVVAEVRPGDWLLVTSGTGGYKGVWRQVVGLSVLQPAVMVRARGSRAYGAQSDGSPWQLPRRRTEAARGSAAXXXXXXXXXXXXXXXXXDARRARSGSDAWRPLRVGLEELWGAWVFRDDEPCASQDFNTDAPGARWSEPPPPRTGCVGLAFQLPVPDAAGAVDELRRWARSDAAEPEHTPRTTASGGDGISASRVPSDSKIQHNSAQHRDANSYLPSNTRRSXXXXXXXXXXXXXXXXXRALLLPAPMLRALERGVARLLVAWSGAGEARVELLSTEPPRADAGSSAAAAAAPLRSAWRAVYAGAAGACEVTGLRQCSTYTLRVRAAGRRVALLRACTLAAAPPRAPLLARWLPRGGGGAHERVAVIEMGCDCAAAAGRWVLRRRRLPMLSADLAADQQTALATARQWSAIGGDTSADAGPEASVNAAGGRVFEVYRGRKGEAAVGGLEGYRGGWSPALPVTVPQQLRARQSHPPSRAQHTSGRSGSAAEADGDAQAVVRALGPRLSAAQQRRVTAAFARVLRSGGASSSGSDCSAGSRLRSSSSSTERGSGSGXXXXXXXXXXXXXXXXGASGKRDARQNSRKGRLPRGWRRVHDGAGGAAFYVNDGAGVAQWTRPQAWQEEAVALDLGDAAAAMRFEHD Sbjct: 1 MSDSEAIAVGKALRAVDERSLEAWLHWVRQGGTAVCSDIWREAWDSFRPRTNADLTFGPNDPAHNEVVFLRDAGSGSAANEAQALAVQVPVVELGADGLPAVQSETGDVAAARTVAAALRESDVLRLGKCRVTGDAVVGSGGARAPPLWLRVAVVSVREECVVLARRCGEWGAPLAECDSAHGGLLEVPLARLAGAVVLRERGDSRSAAAAPPLPPPDFRTAAAAGCTVVAFALPLPSAEWGLAWLRAAAAEDCRLGGADSLAARAEGGALSAAAALQAEAARERXXXRDRALRDRADARVREARALLPRLSPARALRRDAWAAVGRALFAAEGGRRGRGALRAEWARWTEAAAAAVEAGQQFSAEGQRAXXXXXXQQRAGLPARPXXXXXXXXXXXXGGAAGAVAAADDCRAAWLRFRPRTSLDAPALVNLRAWVQSSRRPRPRAAPWRSGAGSSSVCDTFSDCMRANASDAAAAKLAEFSGAHLKGDSNRLAGGAPTATLSSALRGDALARAKQMVKELPERTRTVLQFLEPSSEPLQVPAVSMVRTPLSGPPAGPPSGFLMGEGLFPLPPGKGIGGXXXXXXXXGDRRGQKGLTLVPRDVVAEVRPGDWLLVTSGTGGYKGVWRQVVGLSVLQPAVMVRARGSRAYGAQSDGSPWQLPRRRTEAARGSAAXXXXXXXXXXXXXXXXXDARRARSGSDAWRPLRVGLEELWGAWVFRDDEPCASQDFNTDAPGARWSEPPPPRTGCVGLAFQLPVPDAAGAVDELRRWARSDAAEPEHTPRTTASGGDGISASRVPSDSKIQHNSAQHRDANSYLPSNTRRSXXXXXXXXXXXXXXXXXRALLLPAPMLRALERGVARLLVAWSGAGEARVELLSTEPPRADAGSSAAAAAAPLRSAWRAVYAGAAGACEVTGLRQCSTYTLRVRAAGRRVALLRACTLAAAPPRAPLLARWLPRGGGGAHERVAVIEMGCDCAAAAGRWVLRRRRLPMLSADLAADQQTALATARQWSAIGGDTSADAGPEASVNAAGGRVFEVYRGRKGEAAVGGLEGYRGGWSPALPVTVPQQLRARQSHPPSRAQHTSGRSGSAAEADGDAQAVVRALGPRLSAAQQRRVTAAFARVLRSGGASSSGSDCSAGSRLRSSSSSTERGSGSGXXXXXXXXXXXXXXXXGASGKRDARQNSRKGRLPRGWRRVHDGAGGAAFYVNDGAGVAQWTRPQAWQEEAVALDLGDAAAAMRFEHD 1243 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348347 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|348347 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4871 ID=mRNA_4871|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=910bp|location=Sequence derived from alignment at Contig_23:259135..260504+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGAAGGCATCGGAAAGGAGGAGCAGCAGGGGAGAGACATCGCTGACGGCCback to top protein sequence of jgi.p|Trimin1|348347 >Trimin1|348347|estExt_Genemark1.C_Ctg_230022 ID=Trimin1|348347|estExt_Genemark1.C_Ctg_230022|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp MSDMSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGback to top mRNA from alignment at Contig_23:259135..260504+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4871 ID=mRNA_4871|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1370bp|location=Sequence derived from alignment at Contig_23:259135..260504+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:259135..260504+ >mRNA_4871 ID=mRNA_4871|Name=jgi.p|Trimin1|348347|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_23:259135..260504+ (Tribonema minus UTEX_B_3156 )back to top |