mRNA_4786 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|7255
Unique NamemRNA_4786
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 416 bits (1069), Expect = 1.310e-145
Identity = 204/220 (92.73%), Postives = 212/220 (96.36%), Query Frame = 3 
Query:   27 MMSKVLALSAFAAGTASAFMQHAPLRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            MMSK +A  A  AG+ SAF+QHAPLRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTI WYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSA+PWDALQQVYAERPLA+AQILLAIFACEA+GQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAM+AIA FFVQENLTGQGPIEQIYAGH+NPFGDGQGVF
Sbjct:    1 MMSKAVAGLALVAGSVSAFVQHAPLRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQIYAGHINPFGDGQGVF 220
[Close]
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 273 bits (699), Expect = 2.320e-89
Identity = 143/215 (66.51%), Postives = 167/215 (77.67%), Query Frame = 3 
Query:   45 ALSAFAAGTASAFMQHAPLRTGVVSRSAGPV-MKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            A++A   G+ASAF+  AP +   V++S+G + MKLG   EGL+GSDLEL  +DPLGFTNN  P  + WYRAAELKHGRVAMLAALG++ QS+YHLPDPVFS+SAKPW AL +V  ERPLA  QI LAIFACEA+GQA QAKPGQA GDL WDPLNL+ S+ E +E+ QLRELKNGRLAMIAI A  VQENLTG G IE      +NPFGDG+G F
Sbjct:    6 AVAALMVGSASAFL--APAQFNSVAKSSGALSMKLGSSAEGLIGSDLELPEFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDPVFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIEAYRENAINPFGDGKGFF 218
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BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 246 bits (629), Expect = 9.890e-79
Identity = 128/185 (69.19%), Postives = 141/185 (76.22%), Query Frame = 3 
Query:  138 MKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            MKLG   +GL GSD+E   +DPLGFTNN  P+T+ WYRAAELKHGRVAMLAALG+I Q +Y LPD   VFS   +P +AL +V AERPLA  QI LAIFA EALGQ  QAKPGQAPGDL WDPLNLK  DPE + KVQ RELKNGRLAMIAIA   VQENLTG G IEQ   G +NPFGDG+G F
Sbjct:   35 MKLGSSAQGLAGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 219
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BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A7S4UG07_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG07_9DINO)

HSP 1 Score: 218 bits (555), Expect = 1.530e-68
Identity = 108/148 (72.97%), Postives = 122/148 (82.43%), Query Frame = 3 
Query:  243 WYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            WYRAAELKHGRVAMLAALG+IFQS+Y LPDPVF++ A PW A+ +VY ERPLA+ QILLA FACEA G   QA+PGQAPGDL +DPLNLK +DPE +E+VQLRELKNGRLAM AIAA  VQENLTG G IE    G +NPFGDG+G F
Sbjct:    1 WYRAAELKHGRVAMLAALGQIFQSFYTLPDPVFAEKANPWQAMIKVYEERPLAMVQILLAAFACEAAGAFIQARPGQAPGDLGFDPLNLKSNDPEIFERVQLRELKNGRLAMWAIAAMIVQENLTGYGVIEAYRQGVINPFGDGKGYF 148
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BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 210 bits (535), Expect = 1.650e-64
Identity = 115/201 (57.21%), Postives = 141/201 (70.15%), Query Frame = 3 
Query:   48 LSAFAAGTASAFMQHAP--LRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQ 638
            L+  AA  ASAF+ +A   L++   S    P MKLG   +GL+GSDLE   +DPLGFTNN + +T+ WYRAAELKHGRV MLAALG++ QS++HLPDP  VF  +   + A  +V +ERP A  QILLAIFA E LG   QAKPGQAPGDL++DP  ++  DPE WE  QLRELKNGRLAMI I A  VQE ++G+G I Q
Sbjct:   12 LAVVAAEDASAFVPNASPLLKSPKRSLRTTPSMKLGTNAQGLIGSDLEWPEFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQ 212
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BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A835Z156_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z156_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.760e-62
Identity = 106/177 (59.89%), Postives = 128/177 (72.32%), Query Frame = 3 
Query:  159 EGLVGSDLELA-TWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            +GLVG+ +E    WDP    +  + + +AWYRAAELKHGRV MLAA+G + Q Y+ LPDPVFS + K  DA+ Q+Y ERP AI QILLAI A E LG + Q     APGDL WDPL L P DPE    +QL+ELKNGRLAM+A A FF+QE LTGQG +EQI +GH++PFGDGQGVF
Sbjct:   43 DGLVGASVETGGVWDPANLASKASEEDLAWYRAAELKHGRVCMLAAVGCLVQGYWQLPDPVFSNT-KAVDAVAQIYTERPGAIYQILLAIAAIEVLGSSIQKY--TAPGDLKWDPLGLAPEDPEELATLQLKELKNGRLAMVATAGFFLQEALTGQGAVEQITSGHLSPFGDGQGVF 216
[Close]
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: W7TEK9_9STRA (Fucoxanthin chlorophyll a c binding protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.520e-61
Identity = 112/208 (53.85%), Postives = 145/208 (69.71%), Query Frame = 3 
Query:   69 TASAFMQHAPL-RTGVVSRSAGPV-MKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            TASAF+  A L  +    R+ G V M +     G+VGSD+E+  +DPLG   N++ +T+ WYRAAELKHGRV MLA++G + Q  YHLPD  F +++KP DAL +V +ERPLA  QI +AI A E LG + Q     APGDL +DPL LKP DPE   ++QL+ELKNGRLAM+A A    QE +TGQGP+EQ+ +GH++PFGDGQG F
Sbjct:   26 TASAFLAPASLPSSSSFRRTQGRVSMDI----SGIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPDGPF-EASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKY--TAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 226
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BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A4D9D759_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D759_9STRA)

HSP 1 Score: 201 bits (512), Expect = 9.590e-60
Identity = 103/175 (58.86%), Postives = 129/175 (73.71%), Query Frame = 3 
Query:  162 GLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            GL+GSD+E   +DP    + ++P+ +AWYR+AELKHGR+ MLAALG + QS YHLPD VFS S K  DAL QV AERP AIAQIL+AI A E  G A  A  G+APGD  +DPLNLKP   E + ++QL+E+KNGRLAM+ +A   +QE LT QG +EQI +GH++PF DGQGVF
Sbjct:  147 GLIGSDVEAIRFDPWNLASERDPEGLAWYRSAELKHGRICMLAALGLLVQSSYHLPDEVFSNS-KGLDALFQVSAERPQAIAQILIAIGAIEVAGLA--ASEGKAPGDFGFDPLNLKPKTEEAFNELQLKEIKNGRLAMVGVAGMLIQETLTNQGVLEQINSGHLSPFNDGQGVF 318
[Close]
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 188 bits (478), Expect = 6.950e-56
Identity = 110/213 (51.64%), Postives = 137/213 (64.32%), Query Frame = 3 
Query:   42 LALSAFAAGTASAFMQHAPLRTGVVSRSAGPV----MKLGPG-GEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPF 665
            LAL + A G        AP R G +  S  P     M L P    GLVG+D++   +DPLG +   + +T+ WYRAAELKHGRVAMLAALG + Q+ Y LPD  F Q A P +A+ ++++ERPLAI QIL AI A E LG   Q +     GDL WDPL +KP+DPE + K+QLRELKNGRLAMI++     QE LT QGPI+QI  G+VNPF
Sbjct:   11 LALCSSALGGEETAFVGAPARLGGLRASRSPSRTMQMALDPSFAGGLVGNDIDAPNFDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNIYQLPDSPF-QEANPINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDG-GDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQILTGNVNPF 221
[Close]
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A0G4FYZ7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FYZ7_9ALVE)

HSP 1 Score: 189 bits (481), Expect = 2.090e-55
Identity = 102/180 (56.67%), Postives = 123/180 (68.33%), Query Frame = 3 
Query:  165 LVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVF-SQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPS-----DPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 686
            +VGSD+EL  +DP G + +  P+T AWYRAAELKH R+ MLAALG   Q    LPDPVF S     W AL+ V  +RP A+AQILLAI A E L    Q   G+APGD  WDPL L+ S     +PE +E +QLRELKNGRLAMI++A    Q+ LTGQG  EQI +GH++PFGDGQGVF
Sbjct:  116 VVGSDVELPLFDPWGLSASIKPETFAWYRAAELKHARICMLAALGLFIQPLAQLPDPVFQSDPDSAWSALEAVSTQRPAAVAQILLAIAAIETLSVNLQE--GRAPGDYGWDPLKLQKSQGLEGNPEKFEAMQLRELKNGRLAMISVAGMLYQQYLTGQGTWEQIASGHISPFGDGQGVF 293
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT25_9STRA1.310e-14592.73Light harvesting complex protein n=2 Tax=Tribonema... [more]
FCP_CHAMQ2.320e-8966.51Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]
W7TCK1_9STRA9.890e-7969.19Chloroplast light harvesting protein isoform 4 n=2... [more]
A0A7S4UG07_9DINO1.530e-6872.97Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A0G4GYX1_VITBC1.650e-6457.21Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A835Z156_9STRA2.760e-6259.89Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7TEK9_9STRA1.520e-6153.85Fucoxanthin chlorophyll a c binding protein n=3 Ta... [more]
A0A4D9D759_9STRA9.590e-6058.86Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4F0S3_VITBC6.950e-5651.64Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4FYZ7_9ALVE2.090e-5556.67Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:860363..865324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|7255|CE7254_655
BRITEko00000,ko00001,ko00194
KEGG Pathwayko00196,map00196
KEGG koko:K08907
DescriptionChlorophyll A-B binding protein
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGs2CDPH@1|root,2S44M@2759|Eukaryota
Evalue3.91e-30
Seed ortholog2880.D7FPU8
Hectar predicted targeting categorysignal peptide
TranscriptId7577
TrackFilteredModels1
ProteinId7255
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|7255gene_4786Tribonema minus UTEX_B_3156 geneContig_11 860363..865324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|7255Trimin1|7255|CE7254_655Tribonema minus UTEX_B_3156 polypeptideContig_11 860523..865298 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4786_6exon_4786_6Tribonema minus UTEX_B_3156 exonContig_11 860363..860543 -
exon_4786_5exon_4786_5Tribonema minus UTEX_B_3156 exonContig_11 861048..861177 -
exon_4786_4exon_4786_4Tribonema minus UTEX_B_3156 exonContig_11 861623..861783 -
exon_4786_3exon_4786_3Tribonema minus UTEX_B_3156 exonContig_11 862813..862919 -
exon_4786_2exon_4786_2Tribonema minus UTEX_B_3156 exonContig_11 864498..864637 -
exon_4786_1exon_4786_1Tribonema minus UTEX_B_3156 exonContig_11 865195..865324 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4786UTR3_4786Tribonema minus UTEX_B_3156 three_prime_UTRContig_11 860363..860522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4786CDS_4786Tribonema minus UTEX_B_3156 CDSContig_11 865195..865298 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4786UTR5_4786Tribonema minus UTEX_B_3156 five_prime_UTRContig_11 865299..865324 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4786 ID=mRNA_4786|Name=jgi.p|Trimin1|7255|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_11:860363..865324- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCCTGCATCCTCCTAGTCACCATGATGAGCAAGGTGCTTGCGCTC
TCTGCCTTCGCGGCCGGCACCGCGTCTGCCTTCATGCAGCACGCTCCTCT
CCGGACAGGCGTGGTTTCCCGCTCCGCTGGCCCCGTGATGAAGCTGGGGC
CTGGTGGCGAGGGCCTTGTCGGATCTGACCTGGAGCTGGCGACCTGGGAC
CCTCTGGGCTTCACCAACAACCAGAACCCCGACACCATCGCCTGGTACAG
GGCTGCGGAGCTCAAGCACGGCCGCGTCGCCATGCTCGCCGCCCTCGGCG
AGATCTTCCAGTCGTACTACCACCTCCCGGACCCCGTCTTCTCGCAGTCC
GCCAAGCCGTGGGACGCGCTGCAGCAGGTGTACGCGGAGCGCCCGCTGGC
CATTGCCCAGATCCTGCTGGCCATCTTTGCGTGCGAGGCCCTCGGCCAGG
CGCAGCAGGCCAAGCCCGGACAGGCCCCCGGCGACCTCAACTGGGACCCC
CTCAACCTCAAGCCCTCGGACCCCGAGACCTGGGAGAAGGTGCAGCTGCG
TGAGCTCAAGAACGGCCGCCTGGCGATGATCGCTATCGCGGCTTTCTTCG
TCCAGGAGAACCTGACGGGCCAGGGCCCCATTGAGCAGATTTACGCCGGC
CATGTCAACCCTTTCGGGGATGGACAAGGCGTGTTCTAAGCTCAGGCATC
ACAGGAAAAAAGGGAACATTGCACATAACATTTGCGCGCTGCACCAGAGC
CTCCCTCCGTTACTATTTTTGGGCGAAGGTGGATATGTCGCGACCGTGTA
ACTGTCATTACCCCCCGCACTCAATGTATGTTTGAATTTTGACCGCGTG
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protein sequence of jgi.p|Trimin1|7255

>Trimin1|7255|CE7254_655 ID=Trimin1|7255|CE7254_655|Name=jgi.p|Trimin1|7255|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp
MMSKVLALSAFAAGTASAFMQHAPLRTGVVSRSAGPVMKLGPGGEGLVGS
DLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHL
PDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQA
PGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQG
PIEQIYAGHVNPFGDGQGVF*
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mRNA from alignment at Contig_11:860363..865324-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4786 ID=mRNA_4786|Name=jgi.p|Trimin1|7255|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4962bp|location=Sequence derived from alignment at Contig_11:860363..865324- (Tribonema minus UTEX_B_3156 )
CAGCAGCCTGCATCCTCCTAGTCACCATGATGAGCAAGGTGCTTGCGCTC
TCTGCCTTCGCGGCCGGCACCGCGTCTGCCTTCATGCAGCACGCTCCTCT
CCGGACAGGCGTGGTTTCCCGCTCCGCTGGGTACGTGTGTGCTGACTGTG
GAGCCAGAGAGCTCATGCGTGTAGAGCGTGCTCTAGGCCGTGTTTGACGC
TGTGGCGAAGCTTGGTCAGCCGCGCTGGAAGGCAGCAATTGCAGCAATGG
AGCTGATGGAGGGCACGGGGGAGCCGATGGCGCTAATTGTACATATGTGA
ATCCGGAGTCAGCTTGGCGGATGGGTGCTGAATGCGGGCGGCGGCTCGCA
GGCGATGCCTGCTGCTGAGCGCTCTATAGCATCTGCAGAGGCAGCATGTG
CATGGGCTTGCTTGCATGCGGAGCTCCGCACGGAACACTGACTGCTGGCA
CCCAAACGGGCAGTGCACAAGATGTAGCTGTCGTGTCCGGCGAACGTGCT
TCGAATCCATTGTCGAACGAGCACTTGCAGGGCATAGCTGGCAAGCAACG
CAGCACAAGTACTAGCGTTGCACCTTACAATGCGGGGTCACTTCATCATC
AGCAGGGCATACCATAGCAGCCCGATCTTGTGAACTAGTGAGATGGTCCT
TCATCTTGTGCAAACAAAACTGTCGCTTGCCGTGCAGCCCCGTGATGAAG
CTGGGGCCTGGTGGCGAGGGCCTTGTCGGATCTGACCTGGAGCTGGCGAC
CTGGGACCCTCTGGGCTTCACCAACAACCAGAACCCCGACACCATCGCCT
GGTACAGGGCTGCGGAGCTCAAGCACGGTGAGAAACCCTTCAGAGTTGGG
TGCCAGCGTGTTGGAGAAAGTCTATCTACCCCTTGCGCTGCCGCCTCTGG
TCTGATGTGTCATTAAATTCGCAAGAGTACATTACCAGCTTACCAACAGC
GTCTGAGAGCTGGTCACATGGCACTGCCAGCATATCAACACCCTCTCTAT
GCGCAGGGCAATGACGTCCAGCACTTGATCTGATGCGGAAGCTGAGCACA
TACCCTCAACAACTAGCAAAATTGGTGGCGAACATAGACGTGCGGCATGT
AGCACACGCGTGGTGGTTTGACAAACGCGTCGGTGCGTGTCGAGACGATG
CAGCGCAAACCGCCGTCAATGCTGTTCCCTACTTTCGGCCTGCTCGTGAC
GCGCGCCACTGTTTGATCCCTGTACAGAGTGTCCTAAACTGACATTCGGC
GCAGTGCAACTGAATTCTTCTGATACATACATGCATGTTACTTGTACATA
CTTTCGACGGTCGTGCCTCAATGGCCAACATAGTCACCACCTCAAGTTTG
AGACCGAAGTTTCACATGCTCAAAGTAGAGTGTGGTTTCGCAAACCAACA
ATACAAGTTGTTCCAGAAGCACAAAACACCAACTGTGCAGCGTGTCAAGG
CACGAGCTATAAACTCAATGCCGCGTCATGTTTACAGCACTGCTGCGTCA
CTGAGTGAGGAATGGCGATCCGCAGCAGCTGATGCGCATCATCAGTAGCC
CGTGCGGCAAATGCTATGGAGCAGAGGCCTATGCAGCCCTGGCTGGTGGT
TATGGCGACGGCAGCGGCAGCAGCCAATACCTTTTCACTGTAAACGCGCG
CACAGAGAGCTGCTGCTCGCTGCTACGGCGCCGGCATCGCACACGCTGAG
CATCATTCACCAAGCCCGATGTGTATGCCCGTACTCAAGATATGAAGGTC
ACGTGCGCGCGTGATTCACGGCATGCAGCGTGCGCAGCTGCGCGTGCCAC
TGCGGCGCGCGCGTGCGCAGCGTGCTGGAGCGCCCAGCGTGATTTAACTA
GGCTGCTGAGCACTGCTGCCCCAAGTGCCCAATTCGCAGCACTTTGACCT
GTACGCCAAGCGGGACCACGCGAGCGATGAGCCATCCGGATTGGCGCACA
CGAACGAGTACTGCACATGTCATCGATAAAGACTGCTTTTCACTGCACAG
ATGCGGGGGGGGGGGAGGGGGGGGGGGGGGGGTACTCGAGGGCAGGTGTC
CGTTGAGCAGTCGTACGTGCCGCGGATCGCCACAGAGTAAACGTGCCTTG
CGCGCTGCTTCCAACGCAGCTACAGCGGTCGATATGGTCAAGGCCCCTCC
GCAAACCCCTGCACTCACACGGCGTAAGCTGCCATTCGCACCGCAGCCTG
CCGTTGTCTAACGCTCACGTGCGCGCTGTACTGCAGGCCGCGTCGCCATG
CTCGCCGCCCTCGACGACCTCTTCCAGTCGTACTACCACCTCCACAGAGT
TTGCAGTTCACCGCAGCCTGCCATTGTCTCACCTCAATAGAAGAATGCGG
TTCACCGCACGCAGCCTGCCGTTGTCTAACGCTCACGCGCGCGCTGCGAT
CACAGGCCGCGTCGCCATGCTCGCCGCCCTCGGCGAGATCTTCCAGTCGT
ACTACCACCTCCCGGACCCCGTCTTCTCGCAGTCCGCCAAGCCGTGGGAC
GCGCTGCAGCAGGTGCGTCTCCCCCCCCCCTGCCGCAGCAGCACGGCTCA
GCGCTGCTGTGTGCTCGTGTCGCTCGCTGAGACGATTGCGGGAACCGACA
AGTCGCATGTGCTTCTCGTGTAACTGGCTGCGACAATCGAGGTGTCGTGT
CGTGGTGGCTGCGGCGCCGGTGACAGCGTATCGTGCTAACATAACTGGTT
GCGGCAGCCAGGGCGCGCGACCGCTGCGCAGAGCCATGCTGCTCATTGCC
GCGGCAGCACGGCTCAGCGCTGCTGCGCGCTCGTGTCGCTGGCTGCAGCG
GCTGCGCGATGCGCTGACGTCGCTGGTCACGGGCAGTTGACGTTGAGACG
GTTGCGGCAGCACAGTCATCAAGTATGACGGGCTGATGGTGCCGACTGCG
GCAGTTGGGGCGCGCGCGGGTGCTGCGCTGAGCCATGCTGCGCTCATTGC
TGAGCGCTGCGGCAGACGCGCGCCGCAGTACGCAGCACCCCCCCTCGGCA
GTGGGGCTGCAAATGGGCGGTGGTGCGGTGCGCGGACGTCGCAGGCTGTA
ACGAATGGGAGGGGGGGGGGGGGGGGGGGGGGGAGGGGGACTGCGCATTG
CAGCAGAGTACGGCCGGCGCCGCTGCGAGGAAGGAAGGGCGGTTCCACTC
TCAATTGCCAACTAGCAAAGGCGTGCGGCATGTGAAGTTGCTGGAAGTTG
AACGAATGCTTCGCCTGGTGTGCCCTTCAGCTTGGTTTTGAGGGGGCGCA
CGCAGCAGGCGCCCTTGATGCTGCAGGGAGGACCGTCTCCACGTTGATTG
TCTACTTGTTTTTTTTCAAAGAGTGTTTACGTGTCACGCATGCGTTGACG
CGTTGAGAGCACGTGCGCGCTGTACAGGCGCGCGCCGCTGCACAACTCCC
ACAGTCGTACTTCAGCCGTGCATCGTGTCATATATTCGTCGGCCCTGATT
GCGTGTGTGTGAGTGTCTTCCCTTTTTTTTACAACTCATGCCTGAAGCGC
GAACAGTGTCTCAGTTCCATTACTTTCGCTCATACGCGCAGGTGTACGCG
GAGCGCCCGCTGGCCATTGCCCAGATCCTGCTGGCCATCTTTGCGTGCGA
GGCCCTCGGCCAGGCGCAGCAGGCCAAGCCCGGACAGGCCCCCGGCGACC
TCAACTGGGACCCCCTCAACCTCAAGCCCTCGGACCCCGAGACCTGGGAG
AAGTGAGTGGTCATGCTGTATCCCATGAAGTGGCGTGGAGGTAGGCATAG
ACTGGGGGGAAGTGCACTATTTTGTTTAACTTGAATGGGACTGCACTGCA
ACTTGAGGGTTTTCCCCCTCAACCTGCAGCCTTTGGTCCCCTCAGACGCT
TGGGGGAAGTGAGACAACATGCTGCCAGTGTGTGTTACACTAGTGGCGTG
CTTGCAAAACAAGTAGTCGGCGATGGCCACCAGCGCGCGCAGTGCAGTGT
AGTGTCTGGTCACACCATGGTGCCAGTCTGATGTTAGTTAAGTGGACCGA
CTGTCTTGCGTCAGGCATCTGGCTTTCACAGTTTTTTCAGCCTGCGAACG
CTACCCGTTTTCAACTTTAATCCAATCGCAACATCACTTCATGCCTGCAT
CTCACATACCACACGTGCGCGTGTGTCTCTGCCGCCAACTTGAACAGGGT
GCAGCTGCGTGAGCTCAAGAACGGCCGCCTGGCGATGATCGCTATCGCGG
CTTTCTTCGTCCAGGAGAACCTGACGGGCCAGGGCCCCATTGAGCAGATT
TACGCCGGCCATGTCAACCCTTTCGGGGTAAGTTCAACTGCTCTTACACT
ATACTTCAAGTGCATACTGCATGTAGGCACCTTGCGTGAGAGGGCAACAG
CTCAGCATATCTGGCTTCCGATTTGAATTCTGCTAGGTAGCATAAATTTG
TAGCAAATGTGAAGTGTTGGACTGGCAGCGCGGCCTCTTTATGCGGCTTC
CGGCTGGTAGACACTGAGTGACTGTGTTTCCGGTGATGTGATGGCTGAGC
CGGCATACTCATATGCATGCATGCAGTCTGCATGTGGCAGCAACGCAGCA
GTGACGGCACAGCCTGGATATGCTTGCTTCTGTTTGCTGTCAGGCTGGCA
ATGCTGCGATTCTGGTCTGCTGGGCTTGTGACTTTCGATTTGGCCCAATG
GGCAATTAAAACCACAGGCATCGTCATGCCAGCCTTGTGCGCCACAACTG
CCCTCACACATGCCGTTGGCATCGTGACTTGCATGCAGCAAACTCATTTG
CATTTCTGTTCATCGCTGCTGCTGCTCACAGGATGGACAAGGCGTGTTCT
AAGCTCAGGCATCACAGGAAAAAAGGGAACATTGCACATAACATTTGCGC
GCTGCACCAGAGCCTCCCTCCGTTACTATTTTTGGGCGAAGGTGGATATG
TCGCGACCGTGTAACTGTCATTACCCCCCGCACTCAATGTATGTTTGAAT
TTTGACCGCGTG
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Coding sequence (CDS) from alignment at Contig_11:860363..865324-

>mRNA_4786 ID=mRNA_4786|Name=jgi.p|Trimin1|7255|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=663bp|location=Sequence derived from alignment at Contig_11:860363..865324- (Tribonema minus UTEX_B_3156 )
ATGATGAGCAAGGTGCTTGCGCTCTCTGCCTTCGCGGCCGGCACCGCGTC
TGCCTTCATGCAGCACGCTCCTCTCCGGACAGGCGTGGTTTCCCGCTCCG
CTGGCCCCGTGATGAAGCTGGGGCCTGGTGGCGAGGGCCTTGTCGGATCT
GACCTGGAGCTGGCGACCTGGGACCCTCTGGGCTTCACCAACAACCAGAA
CCCCGACACCATCGCCTGGTACAGGGCTGCGGAGCTCAAGCACGGCCGCG
TCGCCATGCTCGCCGCCCTCGGCGAGATCTTCCAGTCGTACTACCACCTC
CCGGACCCCGTCTTCTCGCAGTCCGCCAAGCCGTGGGACGCGCTGCAGCA
GGTGTACGCGGAGCGCCCGCTGGCCATTGCCCAGATCCTGCTGGCCATCT
TTGCGTGCGAGGCCCTCGGCCAGGCGCAGCAGGCCAAGCCCGGACAGGCC
CCCGGCGACCTCAACTGGGACCCCCTCAACCTCAAGCCCTCGGACCCCGA
GACCTGGGAGAAGGTGCAGCTGCGTGAGCTCAAGAACGGCCGCCTGGCGA
TGATCGCTATCGCGGCTTTCTTCGTCCAGGAGAACCTGACGGGCCAGGGC
CCCATTGAGCAGATTTACGCCGGCCATGTCAACCCTTTCGGGGATGGACA
AGGCGTGTTCTAA
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